2024-04-20 21:10:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039251695 7428 bp mRNA linear MAM 27-JAN-2021 DEFINITION PREDICTED: Hyaena hyaena protein argonaute-1 (LOC120244909), mRNA. ACCESSION XM_039251695 VERSION XM_039251695.1 DBLINK BioProject: PRJNA694192 KEYWORDS RefSeq. SOURCE Hyaena hyaena (striped hyena) ORGANISM Hyaena hyaena Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Hyaenidae; Hyaena. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_024081028.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Hyaena hyaena Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7428 /organism="Hyaena hyaena" /mol_type="mRNA" /isolate="Hyena2069" /db_xref="taxon:95912" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..7428 /gene="LOC120244909" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:120244909" CDS 185..2758 /gene="LOC120244909" /codon_start=1 /product="protein argonaute-1" /protein_id="XP_039107626.1" /db_xref="GeneID:120244909" /translation="
MEAGPSGAAAGAYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 284..676 /gene="LOC120244909" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:406799" misc_feature 704..856 /gene="LOC120244909" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:400854" misc_feature 857..1219 /gene="LOC120244909" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1013..1015,1058..1060,1100..1102,1112..1114, 1166..1168,1187..1189,1193..1195) /gene="LOC120244909" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1352..2629 /gene="LOC120244909" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1763..1765,1775..1777,1811..1822,1829..1831, 1853..1855,1862..1864,1874..1876,1886..1888) /gene="LOC120244909" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1967..1969,1973..1975,2183..2185,2597..2599) /gene="LOC120244909" /note="active site" /db_xref="CDD:240015" ORIGIN
gagctgttgcaggctccgcggcggcggcggcaacggaggctgcgggggcagcggtgcgagcggccgggcttgggggggtgccgagcccggcccggaagcccgagcagctagagtgctgggtacctaggcccctcactctggactccagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcgggcgcctacctgccccccctgcagcaggtgttccaggcacctcgccggcctggcattggcactgtggggaaaccaatcaagcttctggccaattactttgaggtggatattcctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcctgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgactttgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagctattgtcagctggcgcatgctgcatgaggccttggtcagtggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccccgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcgcagccggtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacagactctcagcgtgtgcgcttcaccaaggagatcaaaggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgtgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtacttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagttgaccgacaaccagacttcgaccatgataaaggctacagctaggtcggccccagacagacaggaggagattagccgcctgatgaagaatgccagctacaacctagatccctacattcaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacccctaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcacagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctaccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaacctctgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtctttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgaccccggcaagagatcattgaggacttatcctacatggtgcgtgagttgctcatccagttctacaagtccacccgtttcaagcctactcgcatcatcttctaccgagatggggttcccgaaggccagctcccccagatcctccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgccgacaagaatgagcgaattgggaagagtggtaacatcccagctgggacaactgtggacaccaacatcacccacccatttgagtttgacttctatctttgcagccacgcaggcatccagggcaccagccgaccatcccattactatgtcctttgggatgacaaccgtttcacagcggacgagctacagatcttgacataccaactgtgccacacttacgtacgatgcacacgctccgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctagtggacaaggagcatgacagtggagaggggagccacatatcggggcagagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcaccaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagcttttcaagccccaagagctgtgccgcccaaatccagaggaagcaaggaggaggaggaggagggagggtagggaggagctcagaaggccttgtttccttctacaaagtgggcaaaggggtgggggacagggccagtaagccagaccaccagccaggaatttctgatgtccacctcatgacccccactcctcaccccatcttgtcacatctggccctgaccccactggaccaagaggggcagcactggtgcccaccatacacacaggtgtctcttgtgactcacagtgctaaagactcatgcctgacagcttggtaaggtcggctctgcagccccgcggacaaaagctggtaggtttgggtttggtactttagatgggagagtgaggggcttaaaaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggtctagatttgtttaagaggaaaaacaaaaccagacccaggtcaatattttagaatactagatgttttaatgggttgaaaatccagtttgtaggaagatttttaatgctaatggtttcggttgctcctcccccagctgccaccccaccctttcccttatttttttctccactttttctaccccaccttacacctcctccctgacagacatccagcccctagtaagacttaaggcactatggcacttagctctgaagtgacacgaccctgtcttccttccgcctactggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttcttttgggggatagggtgggggtgggagaggaggatggtggggaagaaatatccctaacccaacaagcctccaaccagagcgccagctattttgcatttgaaggaattgacttccatattcattaagcttttaaaagaccacaacctcaagatggttaaaatccattgacatttgcactttcagacatgacaagtcttggagctgctgagatgactggcccctggcctttccatttacacctcctgttcttcctgtccccccaatttccccacctgcctggatctgaaattactgtcatagcatttctcactcttggcttctttttttcccctgatggtcaagttgcttatgtttcaatatttcttaactggggtgtcttataacaaatgatctttaggtctaaaataagaaaaaaaagagcaaaaactaaatgttatttttataccataacttgagtctattgccaaaatctgaaaatccctcccatgcccaataagtttacatcccagaaacatagagccatcagaaggaactatgtacctgacttgttctttggcctggctaggtaggggatggttatctccctaaggtggaggtcagactctatccttcccctgtgcagataatatctttttcttgctataggctctgtcctctgcactgccctgcactctttcctgcaagttgcatcttccctttctctggactgtcctctgacactttggctcatcccagattccaatgtgtcttgtggacaggctagggaattttgctgctccctattgcttctgtttacacaaatgaattttccccagtttcccactagggcatgtgagtgggtggcatgggcctttgttttgttttgttttgttttgtttttttgttttttgtctccctggatagagattgggtttgctgtcttgcagaactggaaaagtagggggtttctagcttggtgcctactagcattgagataaggccccctctttccttaactgttcattttttcctgtcccactgcttgggatgagttgcagcttcagtgtggaagttcctctttttgaggagcctgagtttgggtttaccccaatctggtgatgaagccatgacactttagacctagctcaggcttggaggccggtctgaatccgggcctgtgcgcttagagctaccatttcccctccccagcagcccttgtacagacccagatttgctatgcaaaacagtctattccaggttctgttctggttggctactttgttcagcaacttcacaaaacgtagcacaaacattgattatggagaaggcatcaggactgttgagtaactcctcctttacttctttcctactggctacagtatgggatgccccatgggcacagcccagctgaagaacagaacggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgccaacactccatctgccctgtccatcgccttcatatgctgtctacttcgtgttcagtcaccctttgggaaggggagctctcttgggacaatgggctctgcatgttctcttcttgggtgcattttggggctgggatcagggcactgttcctggagggtccagtcattcaccagcatttgcaaatatccatagggagctggtggcagccacctactctcaacaacaagtttatgttctctcctttttctctctttgcctcactctctccatttggattttgagctggggcttgcaatgcattttttagctctttggcattgcacatgccgttcaagaagcaagaaaagcagttgggcgatggcaagaaaatgacctcttgctctgattttttttttttaatatctttgagacttgaaaaatactttgaccttgaggattattcttatttgaaagatggtgcatgcagattgagaagtggtgttagcaacaagctttggctttcttggatttggtttaagtggtgcttcttacttgtgctctaaggaagtattggggggaccccagcctcatcctcttggacaggtctcttgctcccttcattttacttttttgctctcttttctgtttctctttccctgaaatccctttccattttttaattcactaagcttgtttgctggcctgcctgcctatgtgatgatgaattctctgcatggctatgataatcccactgttagccagcaaggtcaggcttagcttcttggctacagaaggccaagtatctgttccccaagcccagtaatgtcctctctgggctggactgccatcaaagttactcagcaggcatgcctacttggcatgaaattcagggggcttctgacaacttccacacatgtccactccttggagttggtttctctcattgctttttctaaatctggtcccatttctcttacatgggggcctcccttttctgaagatatcctagagttgagctacttggtttccagggttggagggttaaggggatggacataggggaataagagagtgatgggaagagaatggagagaatttggataaaagatggtaaagagcactgttctttgatcatttttccagtccagtctgacccatttggggttgaggtgctactgctgaactcgggataagcctggagctattgttgttcatgggaatttaggcttagagtaatgttgaagaagaaggtatctaaaagtatgaaacctccctaaaaagctcctggttcccatgtactagatagcgcctctgcggccttctctttggctaaacaacaatgttcttggatagttttgggtgtcttttttgggggagggggagggtccagaatttagtaaacgaggctggcactcaggatgggcagccaaggggacattttgatttcttagctggcccatagattatctatctacaaggcttgtgaggcagtgttttaaacttggcatcacatgtaacaaggaagaatggaagttccttccccttcaggatggaaagtcctctcaaagtagccaaaatgcagttttcgaaactacattgggggaagttattttttatatttaccgggcctaggctaatctaggatggtagctgggatgccttccttcttaaagtctgatcatggcagggatatgcagggcactctttcctatttagccttctaagcagattggggagaaaggattctctggttttctctccccatccttcatccccccttttattaggacttgccttctccctgtgcagggagagaggctaggttggtgctctccccttaatctattcctactgacttagaacctctggctgctgtttgggagcctaagagagggagtgcaggtaatggactcaaaacaaaacagaataaagtgggcaaggcaaagttccttcttgaaaaaggaaaataggaaactctccaaggattgtgcaagtaaagacaatgtgtcgaatgcactgagtcccctggtgtagtagcaataaggaataatgaaatgactttcctgtgcacagtccaacctgactggtgtgtgatgttgcacttagcagccatctggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctttcaagtccagcatggatggggaaatgtccctgaagccccacagctgtgtacttgtttgcatctgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccattgtaaaattatcccagcagctgtaatgtacagttccttctaaagcaagcaacagcagcagcacaattctgtgttttataaagacaacagtggcttcta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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