2024-04-18 17:19:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_039046945 654 bp mRNA linear PLN 13-JAN-2021 DEFINITION PREDICTED: Benincasa hispida kiwellin-like (LOC120089464), mRNA. ACCESSION XM_039046945 VERSION XM_039046945.1 DBLINK BioProject: PRJNA691418 KEYWORDS RefSeq. SOURCE Benincasa hispida (wax gourd) ORGANISM Benincasa hispida Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Benincasa. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052358.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Benincasa hispida Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..654 /organism="Benincasa hispida" /mol_type="mRNA" /cultivar="B227" /db_xref="taxon:102211" /chromosome="10" /tissue_type="young leaf" /dev_stage="seedlings with two fully expanded leaves" /country="China: Guangdong" gene 1..654 /gene="LOC120089464" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:120089464" CDS 1..654 /gene="LOC120089464" /codon_start=1 /product="kiwellin-like" /protein_id="XP_038902873.1" /db_xref="GeneID:120089464" /translation="
MTNLRSQLFFVILSVISIFHLCGAISSCNGPCHTLNDCQGKLICINGICQDDPNLGTHICSGGGGGSGPPSSGNGCHSIGNLNCKGKSFPQFKCSPPVTSSTRAVLTNNDFTKGGSGGDPSECDGKFHDNSDPIVALSTGWYNGGSRCGKMIQITAQNGRSVLAKVVDECDSVNGCDKAHAHLPPCHNNIVDGSDAVWHALELDIDVGEIPVTWSDA"
misc_feature 265..648 /gene="LOC120089464" /note="double-psi beta-barrel fold of the kiwellin family; Region: DPBB_kiwellin-like; cd22270" /db_xref="CDD:439250" misc_feature order(271..273,277..279,358..375,433..438,442..444, 502..507,511..513) /gene="LOC120089464" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN
atgacaaatttaagatcgcaactattttttgttattctatctgtcatttctatttttcatctttgtggcgcaatctcttcttgcaatgggccatgtcacactctaaacgattgtcaaggaaaattgatttgcataaatggaatatgccaggatgatcctaaccttggcacacacatttgttccggcggtggaggaggatcaggtccaccatcttccggcaacggttgtcattcaattggaaacttgaactgcaagggaaaatcctttccccaattcaaatgctcgcctccagtgacatcttctactcgagccgtgctgacaaataacgactttaccaaaggtgggagtggaggggacccgtcagagtgcgatgggaagttccatgataactctgacccaatagtggcgttgtccacaggttggtacaatgggggttcgagatgtgggaaaatgatccagattacggctcaaaatggaaggtcggtgttggctaaggtggtggatgagtgtgattccgtgaatggatgcgacaaagcgcatgctcatttgccaccgtgtcacaataatattgtggatggctcagatgctgtatggcatgctttggaacttgatatagatgtgggcgaaatacctgttacctggtctgatgcttag
//
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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