2024-04-18 20:24:17, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_038452180 15582 bp mRNA linear MAM 06-JAN-2021 DEFINITION PREDICTED: Canis lupus familiaris argonaute RISC catalytic component 3 (AGO3), transcript variant X2, mRNA. ACCESSION XM_038452180 VERSION XM_038452180.1 DBLINK BioProject: PRJNA12384 KEYWORDS RefSeq. SOURCE Canis lupus familiaris (dog) ORGANISM Canis lupus familiaris Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_006597.4) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Canis lupus familiaris Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..15582 /organism="Canis lupus familiaris" /mol_type="mRNA" /isolate="Tasha" /sub_species="familiaris" /db_xref="taxon:9615" /chromosome="15" /sex="female" /breed="boxer" gene 1..15582 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns" /db_xref="GeneID:475336" /db_xref="VGNC:VGNC:37708" CDS 154..2595 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_038308108.1" /db_xref="GeneID:475336" /db_xref="VGNC:VGNC:37708" /translation="
MMESKDLVPECRKWWLREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 229..513 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 541..693 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 694..1056 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(850..852,895..897,937..939,949..951,1003..1005, 1024..1026,1030..1032) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1189..2466 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1600..1602,1612..1614,1648..1659,1666..1668, 1690..1692,1699..1701,1711..1713,1723..1725) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1804..1806,1810..1812,2020..2022,2434..2436) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
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aagagggaagtggaggtgggagcggactacgatttatgtaatcggtgtgtaatcagaaacaccaaacgccggatcctatcactgtgtacttgggggccaggcttcgggtttggttgtcattttaattccttgaatactatatgtaatcatgatgagcagaaggcaaataaagtttttaaacaaaagtgcttttttcggtaattaaagtttggtagcaaattttctactttcagttaacagttaccttccccccccccaaaaaaaatatgactacaaaatatttgcggttgagattgagaagcttgaagaagatgctttttaagcagttcggtcacttacaatattttctgttaaagaaattgtcataattcttcttgagccaaactgtcactaaaatgccccgtgacagaaccactcctctctttctgccgttccgcacattggaagggttctgtgttgtatttgtttttaatccttaatttaaaaaaaataatgatgatcatggttttagtgttgcttagcttcagtttgaagtgtaaatttcactaataattgcaataaaaagaaaagctttgctccaaa
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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