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2024-03-29 01:48:31, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_038451699            6254 bp    mRNA    linear   MAM 06-JAN-2021
DEFINITION  PREDICTED: Canis lupus familiaris argonaute RISC component 4
            (AGO4), transcript variant X2, mRNA.
ACCESSION   XM_038451699
VERSION     XM_038451699.1
DBLINK      BioProject: PRJNA12384
KEYWORDS    RefSeq.
SOURCE      Canis lupus familiaris (dog)
  ORGANISM  Canis lupus familiaris
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae;
            Canis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_006597.4) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Canis lupus familiaris Annotation
                                           Release 106
            Annotation Version          :: 106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.5
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6254
                     /organism="Canis lupus familiaris"
                     /mol_type="mRNA"
                     /isolate="Tasha"
                     /sub_species="familiaris"
                     /db_xref="taxon:9615"
                     /chromosome="15"
                     /sex="female"
                     /breed="boxer"
     gene            1..6254
                     /gene="AGO4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 14 ESTs, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 20 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:482480"
                     /db_xref="VGNC:VGNC:37709"
     CDS             124..2508
                     /gene="AGO4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X2"
                     /protein_id="XP_038307627.1"
                     /db_xref="GeneID:482480"
                     /db_xref="VGNC:VGNC:37709"
                     /translation="
MVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDMEVTLPGEGKDQTFKVSVQWVSVVSLQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPIIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNEMTELTGRVLPAPMLQYGGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMTYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQEISQELLYSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCADKTERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYQVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTQHTMYFA"
     misc_feature    133..387
                     /gene="AGO4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    418..570
                     /gene="AGO4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    571..933
                     /gene="AGO4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(727..729,772..774,814..816,826..828,880..882,
                     901..903,907..909)
                     /gene="AGO4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1072..2379
                     /gene="AGO4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1483..1485,1495..1497,1531..1542,1549..1551,
                     1573..1575,1582..1584,1594..1596,1606..1608)
                     /gene="AGO4"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(1687..1689,1693..1695,1933..1935,2347..2349)
                     /gene="AGO4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aaaaccaattcgactgttagccaaccattttcaggttcagattcctaaaatagatgtatatcactatgatgtggatattaaaccagaaaaaaggcctcggagagtcaacaggtagtagatacaatggtgcggcacttcaagatgcagatatttggtgatcggcagcctggctatgatggcaaaagaaacatgtacacagcacacccactgccaattggacgggacagggttgatatggaagtgacccttccaggtgagggtaaagaccaaacctttaaagtgtctgttcagtgggtatcagttgtaagccttcagttgcttttagaagctttggctgggcacttgaatgaagtcccagatgactcagtacaagcacttgatgttatcacaagacaccttccctccatgaggtacactccggtgggtcgttcttttttctcacctcccgaaggttattaccaccctctgggagggggcagagaggtctggtttggctttcatcagtctgtgagacctgctatgtggaatatgatgctcaatattgacgtgtctgcaactgctttctaccgggctcagcctatcattgagttcatgtgtgaggttttagacattcagaacatcaatgaacagaccaaaccgctaacagattcccagcgtgtcaagtttaccaaagaaatcagaggtcttaaagttgaggtgacccactgtggacaaatgaaacgaaaatatcgagtttgtaatgtgactagacggccagccagtcatcaaacttttcccttacagttggaaaatggtcaagctatggaatgtacagtagctcaatattttaagcagaagtatagtctgcagctgaaatacccgcatcttccctgtctccaagtgggacaagaacaaaaacatacatatttgccacttgaggtctgtaatatcgtggcaggacagcgatgcatcaagaaactcacagacaatcagacttccacgatgatcaaagctacagccagatctgctcctgacagacaggaagaaatcagcagactggtgaagagtaacagcatggtgggtggaccggatccataccttaaagaatttggtattgttgtccacaatgaaatgacagagctgacaggcagggtactcccagcaccaatgctgcagtacggaggccggaataaaacggtagccacacccaaccagggtgtctgggacatgcgaggaaagcagttttatgctggcattgaaattaaagtttgggcagttgcttgttttgcgcctcagaaacaatgtagggaagatttactaaagagtttcactgaccagctccgtaaaatctctaaggatgcagggatgcccatccagggtcagccgtgtttctgcaagtatgcacaaggtgcagacagcgtggagcccatgttcaaacatctgaaaatgacctatgtgggcctacagctaatcgtggttatcttgcctgggaagacaccggtgtatgcggaggtgaaacgtgttggagataccctcctgggtatggccacacaatgtgtccaagtaaaaaatgtggtgaagacctcgccccaaactctttccaacctttgcctgaagataaatgcaaagctcggaggaattaacaacgtgcttgtacctcatcaaaggccctcggtgttccagcagcctgtcatcttcctgggagcggatgtcacacaccccccagccggggacggaaagaagccttccattgctgctgtcgttggcagtatggatggccaccccagccggtactgtgccaccgtccgggtgcagacctcccgccaggagatctcccaggagctcctctatagccaggaggtaattcaggaccttactaacatggttcgagagctgctgatccagttctacaaatccacacgcttcaaacccactcggatcatctactaccgaggaggggtatcggagggacaaatgaagcaggtagcctggccagagctcatagccatccggaaggcatgtattagcttggaggaagactaccggccaggaataacctacatcgtggtgcagaagagacaccacacacgactcttctgtgcagataaaacagaaagggtggggaaaagtggcaacgtaccagcaggcactacagtggacagtaccatcacacatccttcagagtttgacttttacctctgtagtcatgcaggaattcagggaaccagccgtccttcacattaccaggtcttgtgggatgacaactgcttcaccgcagatgaactccagctactaacttaccagctatgtcacacgtatgtgaggtgcacacgctcggtctccattccagcccctgcatattatgcccggcttgtagcattcagggcaaggtatcatctggtggataaagatcatgacagcgcggaaggcagtcatgtgtcaggacagagcaacggccgggatcctcaggccttggccaaggctgtgcagatccaccatgatacccagcacacgatgtattttgcctgagagtctcagaaaaagaactcaaccaatctggcaccccacgcagcctcgaaatgtttcaaatgcctaccgcctctgagagagccaagttgacttcaggtggtcctctaccagcagcttggaatagttgcactgaatctatactttgcagcactgtctgatgcatcaacaaaattgagccattttttaaaaagtaatagatactcctagattgtcttttctgatgcactggactgaatttttacctcatcttgcaaaggctgatcggcctgaacttccttaaggactttatgagaaaggtttctatggaatattttgctagctgtggtgttcaccgcatccctctagtcttagaagattattccttgttttctgtatccattgagtggggtgtatgcataagtgggaaagaaaaaccaatctacttcagttcagcgtaactttctaattctgtgggtccatagactttttaatggagatttctgacttcaccactgtaaatgcctttaatgagcattaatttttgaaagttttacagttttattagttttcctacttcatcttcatgatatctacagacttgtgctggtgcaagaacaggctgccaggcaattgcactatatttggctgcaaatccagacaggcagttctcttatttggttgacttttgtgaatgtgtagcacaaagagatgtaatgcatgtcacggtgacaaaataacactgccatggtaagagtattcatgtttcccacctctctgaaaaaaaaaaaaaacttttagtatttttcaaagttttcaaaagtgcccattttatgctgctgtgtggtttgttagatctaaatgatttttaagcttttctcatagaaaattaactttggcaataaacattttttaaggtcccttctcttcctcccccaacaatgtagttttttagatgagatttcagtatgattttatcagctacttcttatagatcataatctggcaatttctgaaactggtcagaaaagacatatatttccatgactttttaaagaattatttttatctgttttatagtcacagttggtgtcctgtcactttgttttaaaataagctagaaccaggatgcttccttatcggataggctttgccaatcctcaaagtacattgagtgatgctgcaacctgcacaaatgtaccagcatttaaaactttttttcccgggaatcaaggttactcacacaattatgtgcagtgcaattttttttttttcttctctttcaacctgagatgtacttggtggggtttccttcctttccctaaactaaaattgcttagaagaggttgatttttctgaatagattctagattccgctcgcaaggagacgggttcctttcttgtccaaacaaagggagctgatctaaagcaagcatcagttgaaaatgtagggaaaaatgtattttgtatttagtgtagataccactttgtgaatggacagcagttacatagagtcttggtagttctagccagtgtttcccagccccaattgtactgacttgtgattctctaatcctggaacctcagaagtgagagctggagaaggggatcaaagccccagagccgccttccgtgtgactgaggaaggtgctgggggaagagacagacacaatgtgggaaaaccactttgcccccctgtctggagactgctggtggggaaacactggatctgatggtgaaaggtgtttgaactctgtagccggtccagatcgctcgaactagccttctcaaaatcccagcaatacaaagcactgtttttcttcggtcttttaaagaagcttgtaaatacgttgaagtttacatttccacgtgccgtaggtcagcggcggcccccacccccctcctccgtgtttgctgaaactttagaaggtcagcagagtcccgtagctcattccgaggactgcagcggcgcgtgcagcggggccccaagcaaggtctgtaaccgaggcacatccgaggcaggagtgaagggacggaaggtgttcattgcttaagattttccttttctgcaaatacctcacgtggatactacgaatcaggacctgttggtgaggggctggctgctgcttttgctcacacttgttcagggagagctcagaaaatacccttcagcttggcccccttgggcccaggaggaggaagcttctttcggagaagcaggacttgccggggttcaggatgtgcagagcccttggccagcgggcaccccacctgtactcgagggcctcaggcctgcttgttaacgcacagaagtgtcacttctcaccctgtcctgtcctgcgtgcagcagggagcgatgcggagggccacggagcccggattggcttgccgggccatggcctgaatgcttgaccttgaactctacagcttgtacaacctcagtcagtcctgtacactgggccgaatcagtgtggtggtggaggaaaagccgggaggcctatttttataggaaacagtacttttaagggggcagatgctctcattttggatgaaaggaaagaaatatggaagaactaggattattggggaaaaaaacaaaacaaaacctgctgagggggtgaatctttaagaggtaatcactatagagtcggagctgcagcaatactgttgcaagcaagtctaaatgcatagttgcaatttggcttgacagctgcaataccctaacccctcggggccgactgaattgtcatgcatgtgtcaatcaatgggaggtgtgcattctctagaagtaggtttaggctgtttgtctgttggtttcctttgggttttttttttttttttttttttttttttttttttaaatgcagcctggttaggccctgtcatgtggtgtgaaagattgaaacgtagcaatgctaaagagtaaccgttaaggaataaggtgcggggacattaagagagtggtgacgatccaaacgagaaccgattacgtggtgtggtggtggttgttgaagctgctgaaccctcggggtttctaaagtgaactagctgacttaaagcactcagagcctgggcacgcagaacatgttcattcttactgtaaattctgtttgctgcttccaaaggtgatgatttacaagcagacacgttctgtatggcctgtactttaggatccggtgcccagcctgtgtcggagctcaccacctggttcccctacctacccttgctgtgggaaaaggcaacccactgcctaaggaggcccgctctctctgctctgccccagtgaccctttgtggatgtgctgtaagattttcttgctcaatagcaaggtgttgggagctctgctttcattttaagaaagtggaggctgagggcattgtatgaatactgcttcaactccgaggatttttccttataaaattaaagggaagatcttgttatcgcttaaccattttcttatcccttgctattgacattcatgctctatgtctagtggctgaaaatgtttgcatttgttcatttgactaatggtgtaattttggtttctatattgttagacctgtaatgttttaaaatgtattttattaactttggactggatgtatgtctctagcaatacgaggtactttctaaactattaagggaggggtgatatcctcatgttgagataaaatgatggttgtttaaattttgcaatttttttttggcctgcagggatattttgtgttcatgtgtccaaaagagaataaattggcattcttgtgccaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]