2024-04-24 06:42:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037997049 12290 bp mRNA linear PRI 01-DEC-2020 DEFINITION PREDICTED: Chlorocebus sabaeus argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. ACCESSION XM_037997049 VERSION XM_037997049.1 DBLINK BioProject: PRJNA680339 KEYWORDS RefSeq. SOURCE Chlorocebus sabaeus (Cercopithecus sabaeus) ORGANISM Chlorocebus sabaeus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Chlorocebus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023666033.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chlorocebus sabaeus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..12290 /organism="Chlorocebus sabaeus" /mol_type="mRNA" /strain="WHO RCB 10-87" /db_xref="taxon:60711" /chromosome="Unknown" /sex="female" /tissue_type="kidney epithelium" gene 1..12290 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 mRNAs, 299 ESTs, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns" /db_xref="GeneID:103225124" CDS 167..2296 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_037852977.1" /db_xref="GeneID:103225124" /translation="
MPHRVGACARGTSSLPVPARYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRVSRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERIGKSGNIPAGTTVDTNITHPFEFDFYLCSHAGIQGTSRPSHYYVLWDDNRFTADELQILTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKEHDSGEGSHISGQSNGRDPQALAKAVQVHQDTLRTMYFA"
misc_feature 233..385 /gene="AGO1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 386..748 /gene="AGO1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(542..544,587..589,629..631,641..643,695..697, 716..718,722..724) /gene="AGO1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 881..2167 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1301..1303,1313..1315,1349..1360,1367..1369, 1391..1393,1400..1402,1412..1414,1424..1426) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1505..1507,1511..1513,1721..1723,2135..2137) /gene="AGO1" /note="active site" /db_xref="CDD:240015" ORIGIN
cgaatctttaaggtctccatcaagtggctagccattgtgagctggcgaatgctgcatgaggccctggtcagcggccagatccctgttcccttggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggccagggctcctccgtgcccaggatgcctcacagggtgggggcctgtgcccgagggaccagttctctgcctgtccctgccaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctataaggcacagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgcgttcgcttcaccaaggagatcaagggcctgaaggtggaagtcacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgtcgccctgctagccatcagacattccccttacagctggagagtggacagactgtggagtgcacagtggcacaatatttcaagcagaaatataaccttcagctcaagtatccccatctgccctgcctacaagttggccaggaacaaaagcatacctaccttcccctagaggtctgtaacattgtggctgggcaacgctgtattaaaaagctgactgacaaccagacttcgaccatgataaaggccacagctagatccgctccagacagacaggaggagatcagtcgcctgatgaagaatgccagctacaacttagatccctacatccaggaatttgggatcaaagtgaaggatgacatgacggaggtgacagggcgagtgctgccggcgcccatcttgcagtacggcggccgggtgagcaggaaccgggccattgccacacccaatcagggtgtctgggacatgcgggggaaacagttctacaatgggattgagatcaaagtctgggccatcgcctgcttcgcaccccaaaaacagtgtcgagaagaggtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcggggatgcctatccagggtcagccttgtttctgcaaatatgcccagggggcagacagcgtggagcctatgttccggcatctcaagaacacctactcagggctgcagctcattattgtcatcctgccagggaagacgccagtgtatgctgaggtgaaacgtgttggagatacgctcttgggaatggctacgcagtgtgtgcaggtgaagaatgtggtcaagacctcacctcagactctgtccaacctctgcctcaagatcaatgtcaaacttggtggcattaacaacatcctagtcccacaccagcgctctgccgtttttcaacagccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgatactgtgctactgtgcgggtacagcgaccacgccaagagatcatcgaagacttgtcctacatggtgcgtgagctcctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggtccctgaaggccagctaccccagatactccactatgagctactggccattcgtgatgcctgcatcaaactggaaaaggactaccagcctggaatcacttatattgtggtgcagaaacgccatcacacccgccttttctgtgctgacaagaatgagcgaattgggaagagtggtaacatcccagctgggaccacagtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccatgcaggcatccagggcaccagccgaccatcccattactatgttctttgggatgacaaccgtttcacagcggatgagctccagatcctgacgtaccagctgtgccacacttacgtacgatgcacacgctctgtctctatcccagcacctgcctactatgcccgcctggtggctttccgggcacgataccacctggtggacaaggagcatgacagtggagaggggagccacatatcggggcaaagcaatgggcgggacccccaggccctggccaaagccgtgcaggttcatcaggatactctgcgcaccatgtacttcgcttgaaggcagaacgctgttacctcactggatagaagaaagctttccaagccccaggagctgtgccacccaaatccagaggaagcaaggaggagggaggtggggtagggaggagtgtaggacgccttgtttccttctgtagaggtggtgtaagagtggggaacagggccagcaagacagaccaccagccagaaatctctgatatcaacctcatgtcccccacccctcaccccatcttgtcacatctggccctgaccccaatggaccaaaaggggcagcactggtgcccaccatacacacaggtgtctcatgtgactcacagtgctaaagactcatgcttgacagcttggtaaggtcaactctgtagccctgcagacaaaagctggttaggtttgggtttgatactttagatgggaaagtgaggggcttgagaaagtgggtgggaggagggaaggattttttaggagccttaatcagaaaaggactagatttgtttaagaagaaaaatgaaaccagacccagatcaatattttaggatactagatgttttaatgggttcagaatccagtttgtaggaagattttttaatggttttggttgctcctcccccagctgccaccccccgttccccttgtccctctctgtccacattttctgccccaccttacttctcctccctgacagacatccagcccctagtaatacttaaggcactatggcacttagctttgaagtgacacgaccctgtcttccttccgcccgctggtgggtaaccagtgccttccctgtaacggtaatgctgcagaactgcaaccttttgtacctttctttggggaatggggtgggggtgggagaggaggtagatggggaagaaataccccagacccaacaaacctccagccagaaagccagctattttgcatttgaaggaatcaacttcctcattcattgagctttttaaaagatcacaacctcaagatggttaaaatccattgacatttgcactttcaaacatgacaagtcttggagctgctgagatgactggcccctggcctttccacttatgcctccttttctccttgttcctcctacctcccaccccacccaggtctggagttactttcatagcatttttcactcttggcttcttttctcccttgatggtcaagtctcttgtgtttcaatatttcttaactggggtgtcttataacaaaaaactcttaggtctaaaatgagaaaaaagagagaaaacaaaatgttatttttataccataacttgagtgtattgccaaaatttggaaatccttcccatgcctgatgagtttatatcccggaaacattgagccatcagaatgaactgtgtacctgatttgttctctgacctggctaggtagggagggggtggttatcaccccaagatggggtccgggctccatccttcctctgtgcagataatacctttctcttgctgtagcctccctcctctgcactgtcctgcactctttcttgcaagtgcatctttttccttcctctggactgtcctctgaccctttggctcatcctagattccagtgtgtcctgtggacaggctggggaattttgctgcttcctattgcttctgtttacacaaatgaatttttcctggtttcccactagggcatgtgagtgggtggcatgagcttttttttttctttttgtcttgagacatggggtttggctgtcttgcaggactggagtaggtggtggttctagcttggtctctgctggccttgaagcaagcatccccccctgccccttttccttgactgttcatttttttcctgccccaccgcttgggatggggagttgcaacttcagtgtggaatttcctctttttgaggagcctgggtttggatctatctgatctggtgatgaagccatgattactttagacctagcccaggcttggaggccagctggaggaaggagggtctaaatcctggcctatagagttagaactactgtttcctcagctgcccttgtatgaccgggatttgctatgcaaaacaatctgtcccaggttctgttccggttggctacattgttcagcaactcacaaaacgtagcacaaacattcattatggagaaagcatcaggactgttgagtaactcctcctttttacttttttcctgctggctacagcatggggtgccctataggcacaagcccagctgaagaacagaatggagggctctgggaggaggcagctcactggagagcctacattccttacacaagtgcctaaagagagtgatgctaacactccatctgccctgtccattgccttcatatacagtctacttcgtgttctgtcaccctttggggaggggagctcttctgggacagtgggctctgcatgttctctacttgggtacattttggggctaggatcagggcactattcctggagggtccagtcattcaccagcatttgcaaatgtccatagggagcaggtagcagcctctactcccagcaacaagtttgtgttctctccttttctctctttgcctcactctctccagttggttatcagctagggcttgaaatgcatttttagccttttggcatggcatatgccattcaagaaataaaaaagcaagagaatcagctttgggcaatgacaagaaatgacttcttactctgatttttttgtaaaaaaataatttttgagacttgaaaaataaccctgaccttgaggattattcttgtttgaaaggtggtggatgcagatggagaagtggtgttggcagcaagctttggctcatgtggatttggtttaagtggtgcttcttacccaagcttcaaggaagtgcttgggggacccccagcctcatcctcttagatgggtctctttctccctttgtaccactgttttgccttccttttcctcttctctttttccctggcttcctttcccttttctactattcactctgcttgcttgctggccggcctgcctgcctgcctgcctgcctgcctatgtgatgatgaaatctctgcatggctgcaatgatcccactgttaactggcaaggtcaggcttagctccttgactgcagacgaccaagaacctgttccccaagcccagagatgttcacctgggctggactgccctcaagcttatactagagaagagcaactgacctgctcaacttgtgtgaagtcaggagggtttctggcattttccatacctgtccactccttggagctggtttctctcattgcttttactaaatctggttctttttctctttacctgggacctgccttttctgtgattgtcttagggttgagctacttgggtatcctgggattgagtgttaggggatggacataagggaaagagtgatgagaagagaatggagagaatttgaataaaaggtgggaaaggagagagccctgttctttgattgtttatccagtccaacctgatccattagggattgaggtgctacactggcctccagggataagcctggggctattgttgctgggaacttagacttaacataaagccgaagaagaaggtacctagaattttgaaacttacctaaaaagctcctaatgcccacctgctagatagcttctctgtggcctcctatttagctaagcagcagtgtttttggatacttctcttctgtttgtgaataaggccagcactcaagatgggcagacaagggcatactattagctggcccataggatatctgtaaggctggtgggacaattttggacctggaatcctgtgaactaacaaggttggaagtttcttccccttcagggtagaaaaatcatctcaaactagccaaaaggcagttttggaaactacattgggggaagttatttttatttatatatggggcctaggccaatccaggatggtagctggaataccttccttcttaaaatctgatcatggcagggatatgcagggcactttttactatttggccttctaagcagattgggaaggaggtattttctggttttctctttcctccaacttaataggacttgccttctccctgagcagggagagaggctgggttggtgctctccccttactctactcatactgacttagaacctctggctgctgtttgggcatccaagaaagggaggggaaggaatgagctaaaaacaaaacagaatgaggtgggaaagggagatttccttctctacagaggaaaataggaaaccctccaagaattgtgcaagtaaagacattcgtcaaatgcactgagtcccttggtgtagtagcaataaggaaaaatgaaattactttcctgtgcacacagtccagcctaattggtgcgtgatgttgcacttagcagccatgtggtgggcatgtgtgactactctgggtttcactttagtttctaaactttttatccctctcaagtccagcatggatggggaaatgtctctggatccccacagctgtgtacttgtttgcatttgtttccctttgagacttgtgtttgtgtcctgctttgagctgtaccttgtccagtccatcgtgaaactatcccagcagctgtaatgtacagttccttctgaagcaagcaacagaagcagcagcagcagcagcagcagcagcagcacaattctgtgttttataaagacaacagtggcttctatttctgaagtgcggtctttctctttttttcctaccagcaaaacaaacttttgggactgattacatctctaatagattttaggtgagaataatactgtagattgttatgcagaaatacttcacagggcctccatttattcttcattcaacaaacatgcaaagcactgtgccagcagtattttggggagggcaggcacaattcaaaatgaggaaaatagtgtctgtctcattaagggaattaagtttggtgggggatatgactagccaaccggtcccctggcataggagaaagataatgagggagtagaataagactatagcaacgaatatagggaggaagggacagatttgagagacaagagatagaattagtaggactcgatggctggtgggagaagacaggagtagaagttagctcccaggtttctccttgagcataggagtgtgttgggacattctgccagtcaagatgggggtggcagggggagactgtagaaggaaggtggggagttttttgaagaaagacaatgttgtatagactgagttttgagggtttttgggggcaataagggtaaggtgtccagtaaacacaggttggtgctcaggtaagactgtaaaactgcatttatagatacgggagtcatatagatggtagttaaagccataggcatgaacaagttagcttagaaaaagagaagagaaacataatatacaaccccctaagaaactcagtttaaaggatggggcgaggaagcagatcttaaggtgacagatcactggtagaaagcttgtgggttttttgtttctttgtttaaccagtttagtgaggtaggagaagaaatcagagtagaagtttcatgaagggtgtgattaacaacatgaactgctgcagagaaggagttcttttttttctgtgtgttttacctttctactctccatctgttggggatcttataactctataacttacttaggttattctccagtatttcttgaaaatgagcattggaaaaaccaattctaaaatggctaagactaggactttcaagttccccacaactaccaccaattaggagataattgtaaaagaataaacaaaacctaattttgttcctagccaatattataaactgtgttccagtgtactagataatagtagaatactatatttatttccataacttgtcttctttagagcctgtgaactcctaggagcagaagctatattctcttcatttttgtcatctcagggtcatggcatataccaacggatcagtatgtgcaaatagaattgaaataggctagtagtctgtagtttatgagtatgggctgggtgggcagcggatcaagaagtgataggagtacacaggatgaactcagaattcctgaaatcttcaggtaagcagatacttaaccagattatcattgtcttttcccactcaccccaaattggaggttttatggttttgtactttaagctggtggtataattgtcaagcatgtaaattctggcattcttcctggtactgctagagcattgttatttcaatgcatgggggtaagaaggctcagagaaggattctggcagagggcccagtgagaaatcatcagtggtagccagtgtgtacatacgtggacctaacattcctctggaggccaagtgttgtgaattggcctgtggctatcacctggcagactcccttgggaaaaagccagccagccccatgctgcttttcagcagcaagggttagggaggttggttgaacttgaagagcagaatagacatggagcagattttgcccagttgaagtaagacaaatttatgaccccgagtgaggcagaaataaagtacttagcagggggaatgggaggatgatgattatggcaaattttgctataacctttagttttagaaaagattgatactgaaaagccttcaggatttgcctgtggttgctactcaagttaaaaaagactgggagcctgcattgtttggtcctggagctcaaggttttcagtgaaggcttgtcctggcacctctgggcattccttttcattactagttgagcacccttccttctgctctgtcagttggcaaaatactctggagcacattctggactagcagttgccttgaggtagtcaggctgggtatttggtatctcttggtgtagcagatcccagaatctcatggcaatttggatttggtggctaaaagaaagagttagtgcaaggaaaagactagttggaagttctgagtctgggccatccttaagctgctgtctactgcttgaatgggaagtaatgttgaattggaaaattagctcaccttttttgtttctagctttgcagacatttattcctgatgataggctgagaaatgcctaggcaggcttagaaggcacacagagcatgacagaagtactccgtcaaagcagctgtgtcaagaaggaagagctggaaaagtggatttgctggggaattaggtgcatttagttttccacttaggcacaaactgccttctccagtatatcatagcatggttttttaggcctttgtggcttaccctgcaggaacatactatcctgttgttctggactgtagcaccttcaccaccatcctcttagcaatggttttttgtttgggagtttttgtgttttttttggacaaagtataatattgagggacctttttagggagcctttgatcctttgtccccattttccaaaggcagggaactttcctcttaagagacagtgggaacttttagccaggtttttggaaaaggcctgtgagctattaatgagagtgagctgcaaaaggaggaagggtttgtttgggtgctttgaagtacttggctaggtgttttctacagtatcttatacaattgcatcttaaagtatctttacatgcaaaatagtttatcagttatcttcaattgcatattacaaaattctgattaaatttttcttaaataggaaaactatcatttcatatgacaagaaagcctaatttaatgttactccaaggttagttaattcagtggctcagtgataagaccaaagaattagtttcttgaaatctttttggtctgccatcctccatgttgtttatcctcacgccagttcgcctcatggtcccaatatggctactgtaattccgggaaggaaatgctgacagaaccatgcctggcaaaagagacaaatttttccgtgtccttctaaagcaaggaagtcttttcctggaagctccagcagatccggcctcatggctttgctagaaatgggtcatctcactcctgtcattggcaaagcaagtaagatcatccatcatgagtggcttagatgaatgaattatcctttgagtcacgtagactagaaagtccagtcatgtctaccagcaagaaaggagataagggctattggataagcagcgtctggtctcaaaggtacttcagcttttacagatgagaaacatgaatctgaatgactttcctaggctcacagcaagagagggccttcagtgttagctgtatctgtccctaaagcccaagttttatattgtatcttgctacagtgtaaagtaacttactttctaccttgtggaaactgatggtctaggagaagagatttgaactccggtgcccaggtgactctaatcttggcccatgtgagaagattctactgagttgctgtcctcatccagtgatgtttcttgtctcacacaagaagcctaggagtagaaagtcctaagtggagtagaataatagtggcagcagggagggaagtgtgcacggtgtgtccctgagcctgacttactgggcaggaacttggcgctaaagtggcagctggccaccctgtctttcctgcatgcactgagtatttggtagctgattatgcctttccttagtgaccagtgatattgatcatcttttcatgtgcttagttactatccccatatctttgttgttcacatcttttacccatcgtatttgttgtttttgagacagtgtctcactctgtcacccaggctggagtgcagtggcacgatcacggctcactgcagtttctgcttcctggtctcaagcagtcctcccacctcagccttctgagtagctgggcttacaggcacacactaccatgctcagctaatttaaaaaaaaaaaaaaaaattttttttgtagcagttcggtctgattattattgcccaggctggcctctctcagcttcaagctatcttcccgcctcggccttccaaagtgccggaattacaggcataagccactgggcgcagcctcttttacctgtttcaaaattgagttttattgagttgtaagagttctttattcattttaaacacaagtccgttgttggttatatcttttacatctatttttcccagtctgtggcttgccttttcattttgaagagcaaaagtttaaaattttgtgaatttattaaagctccatttgttgcttttttcttttctagtttatacttttgtgtcatattttaggaaactttgcactgggtatttgatggctcctgaggaggttcaactttcagagggcactgatttctctgcacctgagattttgtactatttctgtatttctttcttcttaaagaacagccagtgtcaccaggtatgagggcagagttttagcttgtttgctgagccccattcttgaagcttatttatttattcatctatctatccatccatcaatccaacaaatatactgaatgctgctgtgtgccaggcactggcactgttctaggtactggggcaatgggagttaaggtaatacccaatgaccctgctctgtacccttaagagcagactcagttgggaatgagttatccaaaaatagggtgtacatgtagtcaggagagagcctcatacagctttgcctttggcagaatccttcaaacctctttgtcttcctacttcttgatattacaaatcatgagcctttcatatgcgttcactctaaagaggtgggttcctggatagcagaagtagatagaaaggcatcactgacatttattgagatggagtgaatcagagggtgtaaattctgctccatcaatgtcgaaaaagactagccgatctcaagggttcatcactgtcaccatgtctattgtctattctggaagaagctgaagaagtctgcctttgtttagggaaccagttccagaatcagaggggttgaggatataaaagacccttgcacaagagttggtatttaccctgtcagatgctgctaccaagatttggattgtgtacagtcgaggattaaaaatgacttttaagatgca
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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