2024-11-21 22:19:43, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_037748436 4402 bp mRNA linear VRT 19-NOV-2020 DEFINITION PREDICTED: Sebastes umbrosus solute carrier family 45 member 3 (LOC119475566), mRNA. ACCESSION XM_037748436 VERSION XM_037748436.1 DBLINK BioProject: PRJNA675852 KEYWORDS RefSeq. SOURCE Sebastes umbrosus (honeycomb rockfish) ORGANISM Sebastes umbrosus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei; Sebastidae; Sebastinae; Sebastes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_051269.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sebastes umbrosus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4402 /organism="Sebastes umbrosus" /mol_type="mRNA" /isolate="fSebUmb1" /db_xref="taxon:72105" /chromosome="1" /sex="male" /tissue_type="muscle" /dev_stage="adult" /geo_loc_name="USA: California coast" /lat_lon="33.599833 N 118.265167 W" /collection_date="05-Oct-2017" /collected_by="University of Washington" gene 1..4402 /gene="LOC119475566" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:119475566" CDS 266..1825 /gene="LOC119475566" /codon_start=1 /product="solute carrier family 45 member 3" /protein_id="XP_037604364.1" /db_xref="GeneID:119475566" /translation="
MNKPKMQVEGTKTKDLVWKLFLVNIVSCSLEVCMAAVTVYIPPLLLQTGMEERYMTMVLGVAPVLGLISIPVIGSASDSWEGRFGRRRPFIWMLSLGVLLGLQVMPRAGRLAVLMSPQHPHRLEALLQAGAVCLIEFCVNACLTVLLALLSDLFPGEEEIRRAFSVYSMMTSLGGCLGFLLPAVDWSQAPVATYLGGQESFIYTLLTFLFLSCLLPTVFIQEETGTRGGERKTVAPLRSWSSRCCSRPQCSIVTLGRCVSACTSVFPRSYAACTRVPTVIWRLFVAETCSWMALMSVVIFFADFMGEGLYKGVPSAEPQSQGRKHYDEGVRMASLGLFLQCVVSLLCSVLMDSWVALLGARVVYSSSAALLVFTTAFMSVSNSVVTVTVMAAVTGYTLSVLQIVPYTLLCLYHSDSQAFFTSSKPRHRQLSGNTGEPQVSVFAGGGTKGEAVSQRGICFDMAIVDSAYLLSQLVPAMCLGSIVQLANSSRAYMASACCFSLLALFCSTRVVYSHAELQR"
misc_feature 323..1783 /gene="LOC119475566" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature order(353..358,365..370,377..379,473..475,680..685, 689..697,704..706,767..769,776..781,788..790,1124..1126, 1133..1138,1145..1153,1160..1162,1295..1297,1307..1309, 1454..1459,1469..1471,1481..1483,1646..1648,1655..1660, 1667..1672,1679..1681) /gene="LOC119475566" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" ORIGIN
tatgatttcatgaatgaaagttgcttttttttttcatcttttaggcctaatatatttataccgttctgttctctgaagacgtcgcgtctggtacaatgccacagagcgaccagctgacaaccacccaaagcccctctggaaagtcctttttactgatcagctgtgttaatatgggccgattattccgcataaggactaaacactgtgaacagcaaagatattacattcaaacaagactgtaaaggaacgcctaaagaaggcaaaaatgaataaaccaaagatgcaggtggaaggtaccaaaacaaaagacctggtgtggaagttgtttctggtgaacattgtatcgtgcagtctggaggtgtgcatggctgcagtgaccgtctacatcccacctctgctgctgcagaccggcatggaggaacgctacatgaccatggtgctcggggtggctccagtcctgggtttgatcagtatacccgtgatcggctcagctagcgattcgtgggagggtcgctttggtcgtcgccggccgtttatctggatgctcagtcttggagttttactgggcctgcaggtgatgcctcgggccgggcgcctggcggtgctaatgtccccacagcaccctcaccggctggaagctcttctgcaggccggagctgtgtgtctcatagagttctgtgtgaacgcctgtctaaccgtgctgttggccctgctgtcggacctgttccctggggaggaggagatccgcagagcgttctcagtatattccatgatgacgagtctggggggatgcctggggttcctgctccctgccgtggactggagccaagcacccgtagcgacatacctgggaggccaagagtccttcatctacaccctgctcaccttcctcttcctcagctgccttctccccaccgtcttcatccaggaggagacgggaaccagaggaggagagaggaagacagtcgcccctttgagaagctggagcagcagatgctgctctcggcctcagtgttccatcgtcacactcggtcgatgtgtgtcagcgtgtacgtcagtgttccctcgctcctacgcagcgtgcacgcgtgtgccgacggtcatatggcgactgtttgtggcggagacgtgcagctggatggcgctgatgagcgtcgtgatcttctttgctgactttatgggggaggggttgtacaaaggagtgccgagcgcagagccgcagtcacagggaagaaaacattacgatgaaggtgtgcgtatggccagcctgggtctcttcctgcagtgcgtggtatcgctgctgtgctctgtgctgatggactcctgggttgctctgctgggagccagggtggtgtacagcagcagtgcagctctgctggtgtttaccaccgccttcatgagcgtctcaaacagcgtggtaacggtcaccgtcatggcggccgtgacaggatacacactctccgtccttcagatcgtgccgtacaccctgctgtgtctctatcactcagacagtcaggctttcttcacatcatccaagcccagacatcgacagctcagcggcaacaccggggaaccccaagtttcagtgtttgcgggtggaggcaccaaaggcgaagcagtctcacagagagggatctgttttgacatggcgatagtggacagcgcctaccttctctcacagttggtgccggcaatgtgcctcggctccatagtgcagctggctaacagttcgagggcttacatggcctcggcctgctgcttcagcctgctggcgcttttttgctctaccagggtcgtctacagccacgctgagctccaacgctgaccgtctctccatcaaacacaccagcagaggatggacagtaacctctgatgctgaactagttacagttactgcgttcttcttcttctcaggaacatgttgtgacatacatagagcaaaccttttaagaattgtgttgtattgtcatcgcaaggtcaagacacatgccatgtgtcaagtcagcacattctcaaggccagtgatgagatgtggatgaatgagctgctttcatcgcagtcaaaactatttattgtgggtaaaatgaagctatgttatgttaattgagtttctatgttttgggtttgttttgatgttgggttcaaggatgatgtgatttgattttggtggtcaaaggtcaaggtcactgtgacctcacatccgtcccattctctcaggaacgccttgagtgaatgtcttcaaatttggcacaaacagacacttagacccggtaagggtcaaggtcaccgtgacctcacgtccgtcccattctggtgaaatctcaggaacgccttgagctaatttcttcaaatttggcagaaacttcctcttggaatcaaggatgaactcattagattttggtagtcaaaggtcaaggtcactgtgaccttacatccgtctcattctcatgaaagcattatctcaggaacactttgagcaaatgtcttcaaatttggtacaaacttccacttcgactcaaggttgaactgattaggtcaaaggtcactctgacctcacgtccgtcccattctagtgacatctcaggaacgccttcagcgaattccttcaaattttgcaccaacatccacttcaacaaggatgaacttattatattttgtttgatgaaggtcaaaggtcaccgtgactttacgactgtcccattctcgtgatattttgggatcgccttgatcaaatttcctcgaatttggcgtaaacatccatttcatcaaggtgaagtgattaaatttttttggttaaaggtcaaggtcaccatgacctcacactcgtcccattctcatgaaatcttgggaacgccttgagcaattttcctcaaatggcacaaatatccacttagactcaaggttgaagggattagatttaggtagtcaaaggtcaaaggtcaaaggtcattgtgaaggtcatcgtcccaatcttgtgatatctcaggagcactttgagcaaatttcttcaagtttgaagtgattcgattttgttgattaaacgtcaaaggtcaagaatccatatgctaattatgatgttttgcacaaaagtccaacatgatgaaatgatgaagtgacgacattttggacagacatggatgtaaactgcaacttcactggttggtggagccaaacagcctcgaggcggtaattctagttttttttttataatcttgtacgggtaatgaaagggagcgacatcctgctgtgtactgttgctaagaaaccacagtggagtcttgacactcattgtgtgctgcattatgctgcagtcttctcgtccatatgctctgtttggcttctgtggaggatcagtaataataactgaatgacaccgattacccaagagaaatcaacctttatagcaaaacaaagcttcctttacagcacaagagtcccacttgtttggagctatactggttcttcctgatctccacaccctgtcctactattgtgctgtaccacttctggcaacatgttaacatctcagggacaatattgactttacaaagtttacagtttgtctgtcagatgttcttaaccttcctgttgtcctcgggtcaaatttgacccgtttacaaacttcatcatattacgaatatgggtttctttcatctgattaacatggatgaaagtaattcataatttctggggggttttctatgatcaaaaaggaggtataatttcatgtaaatgaagtttattgaccataaattacagaaaaaagtgtaaaacttgtggtaatgagttggaatgaagtttgctgaaaaggtgtcattatgtgctgccattgaaaatgttttatattataatatttataatattctgactaaactttgacatatacccatctgtgataatccatcaatattatgttccactgatagtcaaaataattaaaaatttcggctttttttactcaaacattaggtgtaatttaatggaaataatatttattaaccataaattccccccaaaaagtataaatcatgtggtaatgagttggaacgaggttggctaaaaaggtgtaacacagaattaggtggtaatttatagtttatggtttataaactgtcaaaccagaccaaaatttgcacggtcgacgggaagacaataggagggttaactagaataagtctacaggacgctcaaatagtgctctgatggttcatttaaggtgcttggcaatggtgcaactgaaagatatccgcaagctagcgtcgtcctaaactacaccgcagaagacgttattctgttcattcatggtgtctccgctgactcactcagttggcatagattgtttgaaatgtgtagattagttattagaataatatttttgcacttcattcagatataagcttgc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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