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Previous release (v1)
2026-03-03 20:43:15, GGRNA.v2 : RefSeq release 233 (Jan, 2026)
LOCUS XM_037748436 4402 bp mRNA linear VRT 19-NOV-2020
DEFINITION PREDICTED: Sebastes umbrosus solute carrier family 45 member 3
(LOC119475566), mRNA.
ACCESSION XM_037748436
VERSION XM_037748436.1
DBLINK BioProject: PRJNA675852
KEYWORDS RefSeq.
SOURCE Sebastes umbrosus (honeycomb rockfish)
ORGANISM Sebastes umbrosus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
Acanthomorphata; Eupercaria; Perciformes; Scorpaenoidei;
Sebastidae; Sebastinae; Sebastes.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_051269.1) annotated using gene prediction method: Gnomon.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Sebastes umbrosus Annotation Release
100
Annotation Version :: 100
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 8.5
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..4402
/organism="Sebastes umbrosus"
/mol_type="mRNA"
/isolate="fSebUmb1"
/db_xref="taxon:72105"
/chromosome="1"
/sex="male"
/tissue_type="muscle"
/dev_stage="adult"
/geo_loc_name="USA: California coast"
/lat_lon="33.599833 N 118.265167 W"
/collection_date="05-Oct-2017"
/collected_by="University of Washington"
gene 1..4402
/gene="LOC119475566"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 7 Proteins, and 96% coverage of
the annotated genomic feature by RNAseq alignments"
/db_xref="GeneID:119475566"
CDS 266..1825
/gene="LOC119475566"
/codon_start=1
/product="solute carrier family 45 member 3"
/protein_id="XP_037604364.1"
/db_xref="GeneID:119475566"
/translation="
MNKPKMQVEGTKTKDLVWKLFLVNIVSCSLEVCMAAVTVYIPPLLLQTGMEERYMTMVLGVAPVLGLISIPVIGSASDSWEGRFGRRRPFIWMLSLGVLLGLQVMPRAGRLAVLMSPQHPHRLEALLQAGAVCLIEFCVNACLTVLLALLSDLFPGEEEIRRAFSVYSMMTSLGGCLGFLLPAVDWSQAPVATYLGGQESFIYTLLTFLFLSCLLPTVFIQEETGTRGGERKTVAPLRSWSSRCCSRPQCSIVTLGRCVSACTSVFPRSYAACTRVPTVIWRLFVAETCSWMALMSVVIFFADFMGEGLYKGVPSAEPQSQGRKHYDEGVRMASLGLFLQCVVSLLCSVLMDSWVALLGARVVYSSSAALLVFTTAFMSVSNSVVTVTVMAAVTGYTLSVLQIVPYTLLCLYHSDSQAFFTSSKPRHRQLSGNTGEPQVSVFAGGGTKGEAVSQRGICFDMAIVDSAYLLSQLVPAMCLGSIVQLANSSRAYMASACCFSLLALFCSTRVVYSHAELQR"
misc_feature 323..1783
/gene="LOC119475566"
/note="Major Facilitator Superfamily; Region: MFS;
cl28910"
/db_xref="CDD:475125"
misc_feature order(353..358,365..370,377..379,473..475,680..685,
689..697,704..706,767..769,776..781,788..790,1124..1126,
1133..1138,1145..1153,1160..1162,1295..1297,1307..1309,
1454..1459,1469..1471,1481..1483,1646..1648,1655..1660,
1667..1672,1679..1681)
/gene="LOC119475566"
/note="putative chemical substrate binding pocket
[chemical binding]; other site"
/db_xref="CDD:349949"
ORIGIN
tatgatttcatgaatgaaagttgcttttttttttcatcttttaggcctaatatatttataccgttctgttctctgaagacgtcgcgtctggtacaatgccacagagcgaccagctgacaaccacccaaagcccctctggaaagtcctttttactgatcagctgtgttaatatgggccgattattccgcataaggactaaacactgtgaacagcaaagatattacattcaaacaagactgtaaaggaacgcctaaagaaggcaaaaatgaataaaccaaagatgcaggtggaaggtaccaaaacaaaagacctggtgtggaagttgtttctggtgaacattgtatcgtgcagtctggaggtgtgcatggctgcagtgaccgtctacatcccacctctgctgctgcagaccggcatggaggaacgctacatgaccatggtgctcggggtggctccagtcctgggtttgatcagtatacccgtgatcggctcagctagcgattcgtgggagggtcgctttggtcgtcgccggccgtttatctggatgctcagtcttggagttttactgggcctgcaggtgatgcctcgggccgggcgcctggcggtgctaatgtccccacagcaccctcaccggctggaagctcttctgcaggccggagctgtgtgtctcatagagttctgtgtgaacgcctgtctaaccgtgctgttggccctgctgtcggacctgttccctggggaggaggagatccgcagagcgttctcagtatattccatgatgacgagtctggggggatgcctggggttcctgctccctgccgtggactggagccaagcacccgtagcgacatacctgggaggccaagagtccttcatctacaccctgctcaccttcctcttcctcagctgccttctccccaccgtcttcatccaggaggagacgggaaccagaggaggagagaggaagacagtcgcccctttgagaagctggagcagcagatgctgctctcggcctcagtgttccatcgtcacactcggtcgatgtgtgtcagcgtgtacgtcagtgttccctcgctcctacgcagcgtgcacgcgtgtgccgacggtcatatggcgactgtttgtggcggagacgtgcagctggatggcgctgatgagcgtcgtgatcttctttgctgactttatgggggaggggttgtacaaaggagtgccgagcgcagagccgcagtcacagggaagaaaacattacgatgaaggtgtgcgtatggccagcctgggtctcttcctgcagtgcgtggtatcgctgctgtgctctgtgctgatggactcctgggttgctctgctgggagccagggtggtgtacagcagcagtgcagctctgctggtgtttaccaccgccttcatgagcgtctcaaacagcgtggtaacggtcaccgtcatggcggccgtgacaggatacacactctccgtccttcagatcgtgccgtacaccctgctgtgtctctatcactcagacagtcaggctttcttcacatcatccaagcccagacatcgacagctcagcggcaacaccggggaaccccaagtttcagtgtttgcgggtggaggcaccaaaggcgaagcagtctcacagagagggatctgttttgacatggcgatagtggacagcgcctaccttctctcacagttggtgccggcaatgtgcctcggctccatagtgcagctggctaacagttcgagggcttacatggcctcggcctgctgcttcagcctgctggcgcttttttgctctaccagggtcgtctacagccacgctgagctccaacgctgaccgtctctccatcaaacacaccagcagaggatggacagtaacctctgatgctgaactagttacagttactgcgttcttcttcttctcaggaacatgttgtgacatacatagagcaaaccttttaagaattgtgttgtattgtcatcgcaaggtcaagacacatgccatgtgtcaagtcagcacattctcaaggccagtgatgagatgtggatgaatgagctgctttcatcgcagtcaaaactatttattgtgggtaaaatgaagctatgttatgttaattgagtttctatgttttgggtttgttttgatgttgggttcaaggatgatgtgatttgattttggtggtcaaaggtcaaggtcactgtgacctcacatccgtcccattctctcaggaacgccttgagtgaatgtcttcaaatttggcacaaacagacacttagacccggtaagggtcaaggtcaccgtgacctcacgtccgtcccattctggtgaaatctcaggaacgccttgagctaatttcttcaaatttggcagaaacttcctcttggaatcaaggatgaactcattagattttggtagtcaaaggtcaaggtcactgtgaccttacatccgtctcattctcatgaaagcattatctcaggaacactttgagcaaatgtcttcaaatttggtacaaacttccacttcgactcaaggttgaactgattaggtcaaaggtcactctgacctcacgtccgtcccattctagtgacatctcaggaacgccttcagcgaattccttcaaattttgcaccaacatccacttcaacaaggatgaacttattatattttgtttgatgaaggtcaaaggtcaccgtgactttacgactgtcccattctcgtgatattttgggatcgccttgatcaaatttcctcgaatttggcgtaaacatccatttcatcaaggtgaagtgattaaatttttttggttaaaggtcaaggtcaccatgacctcacactcgtcccattctcatgaaatcttgggaacgccttgagcaattttcctcaaatggcacaaatatccacttagactcaaggttgaagggattagatttaggtagtcaaaggtcaaaggtcaaaggtcattgtgaaggtcatcgtcccaatcttgtgatatctcaggagcactttgagcaaatttcttcaagtttgaagtgattcgattttgttgattaaacgtcaaaggtcaagaatccatatgctaattatgatgttttgcacaaaagtccaacatgatgaaatgatgaagtgacgacattttggacagacatggatgtaaactgcaacttcactggttggtggagccaaacagcctcgaggcggtaattctagttttttttttataatcttgtacgggtaatgaaagggagcgacatcctgctgtgtactgttgctaagaaaccacagtggagtcttgacactcattgtgtgctgcattatgctgcagtcttctcgtccatatgctctgtttggcttctgtggaggatcagtaataataactgaatgacaccgattacccaagagaaatcaacctttatagcaaaacaaagcttcctttacagcacaagagtcccacttgtttggagctatactggttcttcctgatctccacaccctgtcctactattgtgctgtaccacttctggcaacatgttaacatctcagggacaatattgactttacaaagtttacagtttgtctgtcagatgttcttaaccttcctgttgtcctcgggtcaaatttgacccgtttacaaacttcatcatattacgaatatgggtttctttcatctgattaacatggatgaaagtaattcataatttctggggggttttctatgatcaaaaaggaggtataatttcatgtaaatgaagtttattgaccataaattacagaaaaaagtgtaaaacttgtggtaatgagttggaatgaagtttgctgaaaaggtgtcattatgtgctgccattgaaaatgttttatattataatatttataatattctgactaaactttgacatatacccatctgtgataatccatcaatattatgttccactgatagtcaaaataattaaaaatttcggctttttttactcaaacattaggtgtaatttaatggaaataatatttattaaccataaattccccccaaaaagtataaatcatgtggtaatgagttggaacgaggttggctaaaaaggtgtaacacagaattaggtggtaatttatagtttatggtttataaactgtcaaaccagaccaaaatttgcacggtcgacgggaagacaataggagggttaactagaataagtctacaggacgctcaaatagtgctctgatggttcatttaaggtgcttggcaatggtgcaactgaaagatatccgcaagctagcgtcgtcctaaactacaccgcagaagacgttattctgttcattcatggtgtctccgctgactcactcagttggcatagattgtttgaaatgtgtagattagttattagaataatatttttgcacttcattcagatataagcttgc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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