2024-04-24 02:22:16, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_037031089 7101 bp mRNA linear MAM 14-JUN-2021 DEFINITION PREDICTED: Sturnira hondurensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_037031089 VERSION XM_037031089.1 DBLINK BioProject: PRJNA673222 KEYWORDS RefSeq. SOURCE Sturnira hondurensis ORGANISM Sturnira hondurensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Stenodermatinae; Sturnira. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_023528387.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Sturnira hondurensis Updated Annotation Release 100.20210611 Annotation Version :: 100.20210611 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7101 /organism="Sturnira hondurensis" /mol_type="mRNA" /isolate="20B" /db_xref="taxon:192404" /chromosome="Unknown" /tissue_type="liver" /dev_stage="adult" /ecotype="Veracruz" gene 1..7101 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns" /db_xref="GeneID:118976568" CDS 101..3604 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_036886984.1" /db_xref="GeneID:118976568" /translation="
MALFPAFAGVSEAPDSGSSRKELDWLSNPSFCVGTITTPSQRTEEATALVSEGSPLTRSPVKSDPSDDSDANRKLRHSGRKKKREKKRKRKHQHHEKTRRRHGQPGGSASASASDAGSDRDGSSRGSRDGKRESEKPSQEHSAAAHIGRRCVWLEDLQALTEETFRTDTKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQRISWEGASAAKKHSHRRVERYFTKKNVGLMNADGVAVGSKTGPASSEPVSFIPVKGADDVAPPVTTWLNPLGIYDQSTTQWLQGQGPSEQESKQPDPEPDREDALLKAKVEEFNRRVRENPRDIQLWMAFVAFQDEVMKSPGLYAIEEGGQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLQLCAEFWEPPTLLKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSVSKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHSEKAVSLLQAMVDFTFFKPDSVEGLPTKGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVVTPDDDDDEPEDDDQEIRDKTLPRWRIWLAAERARDQKHWRPWRPDKTKKQTEDDCEDPERQVLFDDIGQSLIRLSSQELRFQLIAAFLQFLGVPSGFSPPAACLYLAMDENSIFDHGLCDEKPLTFLNLSFSGVSCVGRTDQLGCRRWTRGHNREGEEFIRNVFHLVMPLFSGRERSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNDFCLWKQYAHLEWLLGNTEDARKVFDTALSIAGSGELRDHEVCELSLLYAELELELAPDPRGAARARALHILTRLAENSPYGPYTGQVPAVHILKARKAYERALQDCLGETRVSDPPGTDSLDRLVSVVKCFMLFQYLTVGIDAAVQIYEQVFAKLKGAVSPEGPGPEHSASARSVSNALEAVTLMHTSLLRFHMKVSVYPLAPLRQALSEALKLYPGNQVLWRSYVQIQNQSHNASKTRRFFDAVARNAEPLEPWLFAIEAEKMRKRLVETVQRVDGRELHATIPETGLTHRIRALLENATRSDHGSHCPLLWRMYLNFLVSLGNKDRSKGVFYKALQNCPWAKVLYMDAVEYFPDEMQEVLDLMTEKELRVRLPVEELELLLED"
misc_feature 590..877 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(590..616,623..628,638..643,647..649,653..697, 704..712,716..724,746..754,764..769,773..778,785..805, 830..835,851..877) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1046..2044 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
acatttcccagagtgcaccgcgaccacgaaggtagcactaccgacgtccgatcgccggcgccgttttttgtagaggggccgggcggtgcggcctgtgatcatggcgctgttcccggcctttgcgggtgttagcgaggctcccgatagcgggagctccaggaaagaattagattggctgagcaacccaagcttttgtgttgggaccataacaactccgagccaacgaactgaagaggccacagcgcttgtttctgaggggtcaccgctgacgaggagccctgtgaaatcagacccttcagatgacagtgatgcgaacaggaagctcagacactccggcagaaagaagaagagagagaagaagaggaaaaggaagcatcagcaccacgagaaaaccaggagacgccatgggcagccaggtggcagcgcgtctgcgtctgcatcggacgccggttctgaccgggacgggtcttccagaggcagcagagacggcaaaagagaatcggagaagccaagtcaagaacacagtgctgctgcgcacatcggacgtcgctgcgtctggctggaggacctccaggctctgacggaagaaaccttcagaacagatacgaaaccagaccctgcaaactgggagtataagtccctgtaccgaggagacatagccaggtacaagaggaaaggagactcctgccttggcattaaccctaagaagcagcgcatatcctgggagggggcttctgcggcgaagaagcactcacacaggcgtgtcgagcgctacttcacgaagaagaacgtggggctgatgaacgctgacggggttgccgtcggcagcaagactggacctgcctcgtccgagccagtgtccttcatcccggtgaagggtgcggatgatgtggctcctcccgttacaacctggctgaaccctctggggatttatgatcagtccaccacgcagtggctgcaaggacagggtccttcagagcaggaatcaaagcagccagacccagagccagaccgagaggacgcgcttctcaaggccaaggtggaagagtttaacaggagggtgcgagagaatcctcgggatattcagctgtggatggcctttgttgcttttcaggacgaggtcatgaaaagccccggcctatatgccatcgaggaaggagggcaggagaagcggaagaggtccctgaagctcattctggagaagaagctggccattctggagcgagccatcgagagcaaccagagcagcgtggacctgaagctggccaagctgcagctctgcgcggagttctgggagccccccacgctgctcaaagagtggcagaagctgatcttcctacaccccaacaacaccgccctttggcagaaataccttctgttttgccagagccagttcagcaccttttcggtatcaaaaattcatagtctttatggaaaatgcctgagtactttgtcggccgtgaaggatggcagcatcctgtctcaccccgagctgcctggcaccgaggaggccatgtttgccctcttcctgcagcagtgccacttcctgcgccaggccggccactccgagaaggccgtctctctgctccaggccatggtggacttcaccttcttcaaacccgacagcgtggagggcctgcccaccaaaggacaggtagaattcttcgagcccttctgggacagcggagagccgagggcgggggagaagggcgcccgaggctggagggcctggatgcaccagcaggagcggggcggctgggtggtcgtcactccagacgatgacgacgatgaaccggaagacgatgaccaggaaatcagagataagactctgcccaggtggcggatctggctggccgctgagcgggcccgagaccagaagcactggcggccgtggcgccctgacaagaccaagaagcaaactgaggacgactgtgaggacccagagagacaggtgttgtttgacgacatcggacagtctctgatccgactttccagccaagaacttcggttccagctgatcgcggccttcctgcagttcctgggcgtgccttctggcttcagccctcccgccgcctgcctttacctggccatggacgagaacagcatcttcgatcacggactttgtgatgaaaagccgttgacttttctcaacctttcattttccggcgtgagctgtgttggccgcacggaccagttgggctgccggcgctggaccagaggtcacaaccgagagggcgaggagttcatccgcaacgtcttccacctggtgatgccgctgttctcaggcagagagcggtctcagctctgcttctcctggttacgatacgagattgcaaaggtcatttggtgtcttcacactaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaatcgcaacgatttttgcctctggaagcagtatgcacatctggagtggttgctcggcaacacagaggacgccagaaaagtttttgatacggcactcagcatagcagggagcggagaactgagggaccatgaggtctgtgagctcagtctgctctacgctgagctggagctggagctggcaccagacccgagaggggccgccagggcccgagctcttcacatattaaccaggctggctgagaacagtccctatgggccctacactgggcaagtcccagccgttcacattctgaaagctcggaaggcttacgaacgtgcgctgcaggactgcttgggtgagacccgcgtctctgatccacctggcaccgattcccttgaccgccttgttagcgtggttaaatgctttatgctcttccagtatttgactgtggggattgacgccgctgtgcagatatacgagcaagtgtttgcgaaactgaagggcgctgtttccccagaaggcccaggccccgagcacagcgccagcgccaggagcgtgagcaatgctctcgaggccgtcacgctgatgcacacgagcctgctcaggttccacatgaaagtcagtgtctaccccctggcccctctgcggcaggcgctctcggaggccttgaagttgtatccgggcaaccaggttctttggaggtcgtatgtgcagattcagaaccagtcccacaatgccagtaagaccagaagattcttcgatgcagtcgccaggaatgcagaacccctggagccatggctgtttgcgattgaagctgagaaaatgaggaaaagactggtggagacggttcagagggtagatggcagagagctgcacgccacaattcccgagaccggcttgacgcaccggatcagagccctgttggaaaacgcgacccggagtgaccacggcagccactgccccttactgtggaggatgtatttgaatttcttggtgtccttaggaaataaggacaggagcaaaggtgtcttctacaaggcgctccagaattgtccttgggcaaaggtgttgtacatggacgctgtggagtacttccccgatgagatgcaggaggtcctggacctgatgacggagaaggagctccgggtgcgcctgcctgtggaggagctggagcttctgcttgaggactagacaacacccccagcccttgtcgtctgccccacgggccaggatgagccagaggaaatggtggcacctgcgtgtcagatcctgtttctttctgggtttgtgtctgggttcagtctcacctctcacacattttcagatgtgcaaatgacacaaaagctctgttacatattgtatatgcaaatatgtatatgtatgtccatagacaagaatcaggtcgcacgatgaactaaacctattgtgcttggtacgtgtgtgttctgctcttctgcccagccggcgccagcccgccccggggaaggtggcccgcccacttggcacccatggtggtccttgcctgggcttctgggttttgcaggaaccaggatacggcctggttcctcaacgccaggaccttctccctggggctggttcgtgggagattttgctctcattttcagaccagggcagtggggagtcaggtaaaacctggtgttctggttctggcctgcaccgagtgtattaaagtttcttgttgttccccgagcccgacttggctatgccgccgtctgtggaccagcaacatcacctgggggcttgtcaacacacgggctcagctcagctctgcagggtcggagttggcgcctgggcagaaccccaggccctgctgtgccccgcaggggaggctgcctgtgcctgggggtgtgccgatggtagactgtcctgtgctctcactgtccagagcaccagcactgcttaaaaggtgcgggccctaactggccgcgtccttgtttggattttttagggctgtccagcttcttgctggtctttaaaagtcatgatctctagacttgctgaagaaaaatttctttggcaactcattgagaaaagccagtgctatggaatagggttttggctagaaacagacggctgttaggctgggggaaagcagctgggggaaagaggcagcccagctggagcactgtccagggctcagcctcagagcccacaggaagctggccagccacgcagagccactgccctgctgaatggcttcaagcctgaactcagggaaatgcaagaattaaaagagggagcagctctgggacttccagaggctctggagaagggtggggcttctgaacccctttgggacaagggaaggagtggtagaagactgttcacccctgaccttttgagatttcttgcaggaaacccccagtctctcagcaccagcactcctttcctgccccagaacccacagcccttccagaaagcaaagctccatttcctccggaggtcccagctctgcgaccccacggcctttgttgctgaagtgttaccagagatggctggtgtgcagtgatgaccactgcttgcccatcagatgctggtgaatggcgccacccggctctgggggcagcgggcactgaagtctgcactcccagaagcttccctgacagccaggctgcccacaggtgccgagtgaggccccacgccccacacgcaggatgagaaagagctcgctttattgggaatggagcactggaccacgggctcccacacgggtgctccgggaggtgcacagtgcacagcacgtgttgccgggaggtcagctggggtgggcgcccctgggcacctcccccgctgcctccctccaaggggttgggccaaccattttcttgaaggtaactgtagtctgctagagataaagcccctcaggggtgccttcctgttttttatagagaacattttctttagattttttgaagtcttcatttgttactttcattctgcgttctctcaaggccatcagaccagcttctgtacagattgcctgtaagaaagaacagtatgttcagaagtgaaatactttttaatttttattcttacaattcagagagctattttgtagtaaggtatatgttctctctgaggtggcttagactagagtgattaaggaagagactggccacaaaggccccagggtcctgtactggctccggtgccagccagtcgtgtggcctggcagctccattttcgttaaagggagtaatgtttctaagaaacagatgaaattatacccggaaatttagaggtaacagagtgtgtacctacttcatttacctacagttgtaagagaatacatattctggttaaataatgtaagtcagtatacattttattatatgtatcttttcaataattacttgccaaaaagtaaaaacataacccacgaaacatgatgcaataaatacccagtcctggcactgaggtatctatttggtcatggccacaggccatgtcgaatggttcagcagaaaagaaagataaagcattttgtaaactgaaataatgggcgtgtagctgtttactattgttgcaacttttctgaaggcttaaaaatattcaaagtgaaaaaagtggtgcaaaattaaatttttgttctaagtggaggagacgctatttaagctcaacagacgccaaggacgtgcagtccagggcaggtgccacacgaaaagccccggggctgcctcccacccccagccgagcacggtcctcccgtgagaagcacggtgcacccacattcggagctgccaggccttgcactatggtctggtcatctgggaaggcacgcgtgtgatgaaccaagaggtacgatgggcccaggctcccaccttgatgtcggcaccagagaggtcatctttagccatgatcaggtcatccaacgtcacgtcatcagccagtgtcattcggctggtgtggatctgaaagatgcgcttcttggtcttttcgtcgggcagggggaactcgattttcctgtcaatgcggcctgcaggtgaaacgggttcaggggcggccccgtgcggtcccggctctgcccgttcagggagaggcctgggccacgcgcacagtttcactgtcctctgggaaggaggtccaaagcttaaaaagtgaacattcacctttgtagttggtaagtttctatgtttgaattcatctgtttaaaagcaatcctctctgctaccttcagaaatgagtgtgagcaacggttcctgaacggcatgttcagtgcagaagggtgcaagagcaaacaaattacctgctgctgctttggggctaaatgaatgtagaaaatgaaaaactatcgtctgaattatttctttggggaaaagttcttgaggcttaaaagggagtatgtaggaaagaaaacatgtaaaaataaaattcaaagagccaccctggcagacattaccatgctcttacctacactcttagggagacagttttaagttattctaaatttcagtgcagtatctgccttcacgtgtatcgttttataacccgccagagcacacttaagaaacacacacagagattctccgtgatgaaacaaaagcaaacctgaccgggtctgataagtgctggatccaaagtttctattcggtttgtggccatgataaccttcacatcccctcttgagtcaaatccatccaactggttcaacagttccaacatcgttc
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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