2021-01-24 06:16:01, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS XM_035635163 5746 bp mRNA linear VRT 26-JUL-2020 DEFINITION PREDICTED: Scophthalmus maximus testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X4, mRNA. ACCESSION XM_035635163 VERSION XM_035635163.1 DBLINK BioProject: PRJNA646484 KEYWORDS RefSeq. SOURCE Scophthalmus maximus (turbot) ORGANISM Scophthalmus maximus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Pleuronectiformes; Pleuronectoidei; Scophthalmidae; Scophthalmus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_049694.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Scophthalmus maximus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5746 /organism="Scophthalmus maximus" /mol_type="mRNA" /isolate="AOZZmale01" /db_xref="taxon:52904" /chromosome="7" /sex="male" /tissue_type="blood" /dev_stage="adult" /ecotype="atlantic turbot" gene 1..5746 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:118311359" CDS 153..5231 /gene="topaz1" /codon_start=1 /product="uncharacterized protein topaz1 isoform X4" /protein_id="XP_035491056.1" /db_xref="GeneID:118311359" /translation="
MFPSSNRVKLNRVALKDVAVAAPRRRRAPGSPSNVAAQPEEQVQRQDASAPGSDETVRTFLTDRMGPSNKTGDTASRAAEGEPGDDRVGPTKAKRRRNHLQSRRESVDSVALEQEGAYTRDNNKNRHPSPAGLAGSEGSLGRAVTASSCDLCGDCTYTSPPKKTPDKNEQESSSPGPEQSTVGLKINKGNPVTETSKKKIIWIDQYPKVALCDVIQKCDVSTYNCGYVLPEVLKSQVVHCFKRDMRAGFRFAPSCLGHNKQKSEQSAVAKNGKFRPKVQTQDSVCQSPSLTEHQRHRKERADAGILCSRNTHFHRGWIDEASATCSASFSLGKPTNEGDCRTRMWDSDVEGDPGPRCDLIGADFRRDKKIKLGYSLTDGSLPSTLDSESISCSDAAKTHVIDKEKTSSGTSGDSQSCLELASGSCSTNSSRIKENCIHEKSCGQIGEPRETDAAQITSELLCQRNEVDTDGPESFTCQRVRGYCRTIRFSCARTYMSWPFSNTNRSSTAHASTAAHQAEPIHPSARNDGDSPVNRNQSGSPSSQTNDMLPSAPPDESSNTTQQVFHQNEDEQKEDGERAIAKRNGKRHCDTSSYSLDSNNMEFTPHFRDAEESLTSLLSDTATLSPPGQCGGEPGTGTALASSTAVNGPDTDSTASTPPPSVLGLSDWETATAVSPTSSLVTHGGLSTLSVAPSSSKHTINAVEKTLFYCEETKMTSCCSSPTSPSVSSHNCFSFNSCESFLLLPQDEAWGDEEFHAGRSPPILEPYYNVKPFNQNYLAGFGKRSSSSQTSTKEQCVETNSNEYLLPPLLSPVNSPQGHSGTSSLLLSQCCSEEEEEEEEEINKDTSKHEMLPGHHIPQIGNSDRLHLYHHHCEEEEMGGASSKVESLMFHSMVGDVKGGFREESQEETDCEDEEDQGNGNSEQVPFAPKPTAKLISSVLTEPCSSPSSDDGSLSSHRDARLSPSELVGSEWDKTKVEAAGDTEATILDEVTAYEQDILLVDVIQDDPELFENLPEKSLLKLGPARVCEAPKPRPTAVVKVLSPKTEQRLSPVIVDFHSDSPDIKEGSKSRPWRPQCSSNPSTDEHTRHRGPSDANNNLMKGGLERNQPLQMVNSTRNTPLLPYIRNVVAWLFLCSSALCTGPWITKPANVTDCRRQQLNSYCRQYFSESLSCGFKICRFQHVPVDGDEKFCVETVTRFIQNPKCLQKAGAVFTGYYQNNAPGVYFSMPVCLSLLWALLKASMVPEVLSVLGVSLAHKIAPGHEYLLALFNFVRDKALVGCVPELLQLTIKMASAGLVLSLDWLECVKNTPEFQQTIRSNSPLSVPAKLSACAPFPEYLNLAHSIVEIELCTKQEDWRRMGKVFRSICQSSHHPNQVEQVSGRIAIALLSESKDKLSLPFAAFAETVCKSECDGFLLQSFLGRIGVSLMLRYHKTHQWAKGRRVVEVLSVSKVSYSTLKGLFGNEDGASRCVLVTVATELFLLSGSVEGALNTLRENNWFLSSHSWPCEPADLDNRSHVLMRLAEKTSHRDTLEVLCNLPGLKEPNELIDISRYSHLFNSHLQVCVDRQVLPVASDTVDFMLSNNLAVDQAVLQILLHKLGKQNIWLRAREVFRHSLSVGYYTGVSAPPGFLALIVPCRLWEVELALAFEMFIAVNATDILQHSDSSTSCLSITLKSTCLSVWAVETRLLAY"
ORIGIN
gagtggcagattccgggaccggtgttgacgcggtcacacgcaggtgcaaccggagcaagtttacgcttcacgcgaaagcacttgttttagcaactaggcgaagggagctttacgcacgagctgtcgacggccccggtgtgttaagtgccgacatgtttccgtcttctaaccgggtgaaacttaaccgagtcgcgttaaaagacgtcgctgttgcggcgcctcggcggagacgagccccggggtcgccgagcaacgttgccgcgcagcccgaagagcaagtgcaacgacaagacgcctccgcccccggcagcgatgaaacggtccgcaccttcctcacggaccgcatgggcccaagcaacaagacaggagacacggccagcagagccgctgagggggagccgggggacgatcgcgtaggtccgacaaaagcaaagagaagaaggaatcaccttcagtcacgcagggaaagtgtggacagtgtggcgctcgaacaagagggggcctacaccagagacaataataagaatagacacccaagccccgctggacttgctggttcagaagggtctttaggaagagctgtcacagcctccagctgtgatctctgtggggactgtacatacacatccccgccgaagaagacacccgataagaatgagcaggaaagcagcagcccagggccagagcaatctacagttgggttaaagattaataaaggaaaccctgtcactgagacctctaagaagaaaatcatatggatagaccagtacccgaaggtagcgctttgtgacgtaatccaaaaatgtgacgtgagcacttacaattgtggctacgtgttaccggaggttctcaagtcgcaggttgtgcattgcttcaaacgggacatgagagctggatttcggtttgctcccagttgtttagggcataacaagcaaaaaagtgagcagagtgctgtggcaaaaaatggcaagtttcgtcccaaggttcagacccaggatagcgtctgtcagtctccaagtctgactgaacatcagagacaccggaaagaacgcgcggatgcagggattttatgcagtcgcaacactcatttccacaggggttggatagatgaggcgtctgcaacttgttctgcttctttctcattaggtaaacctacaaacgagggggactgcaggactagaatgtgggacagtgatgttgagggggaccctgggccacgatgtgacctcataggagcggactttcgcagagacaaaaaaataaagcttggctatagcctcacagatgggagtttgccttccacccttgactcagaaagcattagctgcagtgatgcagcaaaaactcacgttatagacaaagagaaaacaagttctgggacctctggtgacagtcagtcatgtctagaacttgcatctgggagctgtagcacgaacagttcaagaatcaaggaaaactgcatccacgagaaatcttgtggtcagataggtgaacccagagaaactgatgcagcacaaatcacatcagaactcctctgccagaggaacgaggtggacaccgatggaccagagtcattcacctgccagagagtaaggggctattgcagaacaatacgcttttcttgtgcgcggacatacatgtcttggcctttctctaacaccaatcgttcatctacagcacatgctagcactgcagcccatcaagcagagcccattcatccatctgctagaaatgatggtgactctccagtgaatcgaaatcagtcaggttcaccaagcagccaaaccaatgatatgctcccaagcgcaccgccagacgaatcttcaaacacaacccagcaggttttccatcaaaatgaagatgagcaaaaagaggatggagagcgagctattgccaagagaaatgggaaaagacactgtgatacatcatcatactctttggacagcaataacatggagtttacacctcactttagggacgctgaagagtcattaaccagtctgctctcggacacggctaccctctccccccccggtcagtgtggaggagagcctggcactggcacagccttggcctcatccacggcagttaatggaccagacaccgacagcactgcgtctaccccacccccctcagtgcttggcttgagtgactgggaaacagccactgctgtgtcgccaacatcatctctcgtcacacacggtggtttgagcacactctcagttgcaccgtcctcatccaaacacaccatcaacgctgtagaaaaaacgttgttctactgtgaagaaaccaaaatgacttcatgttgttcttcccccacatctccatccgtttcttcacacaactgtttctcctttaattcatgcgaatccttcctcctcctacctcaagatgaagcatggggtgatgaagaattccatgcaggcagaagtccaccaatcctggagccgtattataatgtaaagccttttaaccagaactaccttgctggttttggaaaacgcagttcatcatcacaaaccagtaccaaggaacagtgtgtagaaacaaactcaaatgagtatctgcttccaccactgctctctcctgtcaattcacctcaagggcactcgggtacaagctccctgctactgagccaatgctgttcagaggaggaggaggaggaggaggaggagataaacaaagacaccagcaaacacgaaatgttacctggacatcacattccgcaaattggtaacagtgatcgtctgcatctgtaccatcaccattgtgaggaggaagaaatgggaggagcctcatccaaagttgaatctctgatgtttcacagcatggtcggagatgtgaaaggtggtttcagagaggaaagccaggaggagactgattgcgaagatgaagaggaccagggtaatgggaattctgaacaagttcccttcgctcctaaaccaacagcaaagcttatctccagtgttttgacagaaccctgctcttctcccagcagcgatgatggatcactttcgtctcatagagacgcaagactcagtccatctgaattggtgggcagtgagtgggataaaactaaagtggaagcagccggcgacactgaggccaccattttggatgaagttacagcttatgaacaggatatcttgcttgttgatgtgatccaggatgaccccgaactgtttgaaaacttgcctgagaaaagtctgctaaaactgggccctgcaagggtctgtgaagcccccaaacctagaccgactgcagtggtgaaagtgctgtcgccaaagacggaacaaagattgtcaccagttattgtagattttcacagtgacagtcctgatatcaaagagggcagtaaaagcagaccctggagacctcagtgtagcagcaacccttccacagacgagcataccagacacaggggtccgtccgatgccaacaataatcttatgaagggcggcctggaaaggaaccagcccctccagatggtgaactccacccgtaacacccccctacttccgtacataagaaatgttgttgcatggctgttcctttgctcctctgctctctgcacagggccgtggatcacaaagccggcaaatgtgacagattgcaggcgccagcagcttaattcttactgcagacagtacttcagtgaatctctgtcctgtggcttcaagatatgtcgattccagcatgtgcctgtggacggggatgagaagttctgtgttgaaactgtgacacggttcattcaaaatccaaagtgtctccagaaagcaggagctgtgttcacaggctactaccagaacaatgcgccaggagtgtatttctccatgccagtgtgtctgtccctcctctgggctctgctcaaagccagcatggtgcccgaggtcctctcggtcctcggtgtcagcttggcccacaagatagcgcctggccacgagtacctgctggccctctttaactttgtgagagacaaggctctcgtgggctgtgtgcctgaactcttgcagctcacaatcaagatggcgagtgcaggtctagtgctgagtttggattggcttgaatgtgtgaaaaacactccagagttccagcaaacgatccgttcaaactctcctctgtcagtacctgccaagctatctgcctgtgctccctttcctgagtacctgaatttggcccactccattgtggaaatcgagctttgtaccaagcaagaggactggaggcggatgggaaaggtgttcaggtctatctgccaatccagccatcatcccaaccaagtggaacaagtcagcggtcgcattgccatagctctcctgtccgagagcaaagataagctgtcactgccctttgctgcctttgctgagacagtgtgtaagagtgagtgtgacggcttcctgctccagagttttctaggcagaattggcgtctcgctcatgttgagataccacaaaacgcatcaatgggccaagggtcggagggtggtggaggtgctgtccgtgtcaaaagtcagctactcaacgctgaagggtttgtttggcaatgaggacggagcttcgcgctgtgtcctggtcactgtggctaccgagctcttcctcctgagtggcagcgtggagggagctctgaacacactccgagaaaacaattggttcctgagctcgcactcttggccatgcgagcctgcggatctggacaataggagtcacgtgttgatgcgtctggctgagaaaacctctcatcgagacacgctggaggttctctgcaatctccctggactcaaagagccaaacgagctgattgatatctccaggtacagtcatctgtttaactctcatctacaagtgtgcgtggacagacaggtcctgcctgtagcctcggacacagtggacttcatgctctctaacaaccttgcagttgaccaggctgtgctgcagatacttttgcacaaacttggcaagcaaaacatctggctccgtgcacgggaagtcttcagacactctctgagtgtggggtactacactggcgtgtcggcgccgcctggtttcctggcactgatcgtcccctgtcgactgtgggaagtggagctggctctagcctttgagatgttcatcgctgtcaacgcaacagatatcctccaacactcagactcctccacttcctgtctcagcattactcttaaaagcacctgcctgtcagtgtgggcggtggaaactcgattactggcttattgatcctagtcgaagggatgaagcttttcttcagtgtcctgcagtgacactgattggcccaatggcctgataatgcatgactttgaaatgccaaacacaagtctgacttgatgtccacagtcggttaaactaaagatggtgctctagttgaaatctgaactttgttttgacgtccggctgacacacaggtagccctacagtttcttcagaagaacggacgaataagaaatgcagcttaagccattcagataacatccacagctattacattttttgggttactctcaaacgaagcacagcattcagggtccaggtcacagcttggctccatggctgccattgtcccacattgccattaatcatatgtaacatttatggatatttaaccagcagcatatcaaccagttgaaattcgccagtattcaggcccttagctctccagtgtcttaggtgcgatgagtaaatgttctaagttgcaacatgtgaagccgtcttaataaacagctgttttcacacta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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