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2021-01-24 06:14:23, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_035414175            6769 bp    mRNA    linear   VRT 07-JUL-2020
DEFINITION  PREDICTED: Anguilla anguilla testis and ovary specific PAZ domain
            containing 1 (topaz1), transcript variant X4, mRNA.
ACCESSION   XM_035414175
VERSION     XM_035414175.1
DBLINK      BioProject: PRJNA643263
KEYWORDS    RefSeq.
SOURCE      Anguilla anguilla (European eel)
  ORGANISM  Anguilla anguilla
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Anguilliformes;
            Anguillidae; Anguilla.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_049201.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Anguilla anguilla Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6769
                     /organism="Anguilla anguilla"
                     /mol_type="mRNA"
                     /isolate="fAngAng1"
                     /db_xref="taxon:7936"
                     /chromosome="1"
                     /tissue_type="liver"
                     /dev_stage="adult"
                     /country="Czech Republic: Elbe River"
                     /lat_lon="50.2909 N 14.4971 E"
                     /collection_date="29-Nov-2018"
                     /collected_by="Martin Reichard"
     gene            1..6769
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:118225574"
     CDS             2182..6042
                     /gene="topaz1"
                     /codon_start=1
                     /product="uncharacterized protein topaz1 isoform X4"
                     /protein_id="XP_035270066.1"
                     /db_xref="GeneID:118225574"
                     /translation="
MIGQSAKNAPKVVNGAFPVVGLAEIVDNQSHAIETQPGKRMRLSTEIIGSTPHDSEIFREPDTAIQMGCSTTASTSHEKRPLSNTMLHCSTGPGHKSENCKHKDAVQGNISPVVSRIVMVGAEESGHPGESCTDDSVDGETEDENERPNFSSCQRTTPSQVWARPSCARVYISWPFRERLSSTNGWDVSVTSLSVSVPSSANTASLVTLSASPLYNSSVTDTPGSQNASHSCEAADSSPLQGEASDFRDGSEHLRASETNGSISEKHCVSESLSLVNGSGVSAQITLVLQHSGQSAEVVELQQDPKLCSSATDYSSKFVQEQGTCREANLEPQVCESDHLRRQKLLQTKAPPKPSSKSVNQAKSPNGLNFPAPCAPLNGTTKSPHFSSTWKRYIMPSGLAQGEHPRCVSQAQNLRARLEVSTALAQGSSGDDASSMSSDDDLMNEVLAPCGEIMCEIRDTGQSYRCSAPVEEGPSGGTIDLLKAYEQDAIVLDVIQDDPELFGNVPEVVPVVKSETPLASKVIHPAKTYVVKNNHKITWEDAQLSATGSDDLGQQDSRKRVCRSILPIEIDGYSNGDLPMLNGLAGGGFHTESSLPVQKGTTDSPQSSVCEWLWPDFKTSFQGGARLNSGKASACTSDDVWDAGLDGDPVQTNVIKDLSAQSAAWTAGSLSDLSEGSEMYCKFYFSEQYTCYRNVCWFLHLPVEGDEKFCMAAVQKLLSGKSSHLLRAAAVFTGYYRKCAPGVHFEMRTLKSLLSALFNQGIVKDQLSVLRVMTPYKILPPVEFISAMFERVSVWGLRIAVPDLIDVTAKCVEAGQVFTTENFEYMQGRLELLKTPSSQMEVFLNIKYRVRESSVAWTPEVGDLAMALAEVECCKEQQDWTKLGGVFCSVCTSNPSLDELNHLCGRIAMVLLIDTPPTSPLPFCQFVEAVCQGASVGGLVKSLLGRIGVSLLLRYYQTQQWTKGTKLLDALNALKVNYSTLKGLFAGDGSVSRCRVISIAAEVLLGCGSMESALSVLKDNEWILSSPLWQCEEADVVHRHSVLCRLAECATQKSMFEETLEILTNLPDVQDVKVDPAQYNLVFHLHLKACLEKPNLTVASNIAELMFTKKIEVDMCVLQLLIHKLGKQNAWQKARILYRSALSMGCYPQTQMNKYCRILPIPHSLSEVEMTLALEMFMVSNATDIQNPGFFPHALQIVLKWKGGTELVSETDRHAAISRLLSAAQTANPKLVIKYATVNLNQEQVFTLDSISACKWLSRNLDWASKLWLPSDSKPESKISPQALST"
ORIGIN      
attcaatatgcaggactaattaagtgtatttattaaagaatgaattgcacgatggcctcgtattttctacccctggaacgctggtcaaaaaaaagtattatcatgtcgttcataggtctcacttattttattggttagttcatttgctgccatctagtggctgctgtagcctactagcaaaccgtcctcttaggacaaaaccacccattcaaataaaacttaacataccaacgttaatgatgaagccatttttacaaaaaacgaattaatatttggatgaagtccatcaatcagacatagtcgtgataactctactagcttgactgcactactgagcaagcagttgcactttacagattagcccaatatggccgtttggcttgatgagtgtctgatggtctgaccttacctgaccaaacctagagactactaataatgatgtcatcttccacttgatgagtcaagggaaatggcaaattaacgtggggctggagtagatggaggtctgaaaattttagtagtgtttacattcggtaacaagccagacgtggacgtttacgagtataagccaattgggcgaaaaccattcacaaagttttttttttttccccagtagggtacagctagcgattagccatagtagggcaacatttaaagcactttaaactaggcgtacctaatatatttatcgagctccagtatttcttgcttttgttgaactaacgtaaagaagttatttcatatcgctagttaaccaagtaactttgcataactataagaacgtagttacagcaaatgccgatctaaaagtcgacactcttttctgtgtttttcttttttttttcattctaattccactgttgcaggcgaaagatgggtaacgttagcatactaatgattggcattggaaaatattgaaacaacgaataacttaagcttgctcgaaactgtggttacttttaatagcaaagatagatccgttgtggttagcttattagccaggcagttactcaagttaaccttatttttcttcgccagtcagtaggttttaaacgttttaatcgtgaaaatgattcagtcgtcctcttctggtagagtcaaattaaaccgaaccaccattcggaaagacagcaccgcattgcctaagaagagacggtcgtttgggggtacaaatctggctaaaactgcaacccaaagaactccagacaatcttactttaaacacaagcgtagagaatacaatcccggagtcaatcggagaaaatacaaatgttctggaactgtccagtataaatattccaaatgactataagaagcagtcaaccgaagaaaaaactaatgggtttgaactgtccagtataaatattcaagttgacggtgagaggcaaatatgtcctacgttttcagaattaaacaaagtgaatgcatcgcccccaaaatccaccaaagtagaattacagcaagcacccgaagaggataaagagacgtcaaatcaagccgagggactcagcaaaggtacagaacagccattagatcctaatttaccatgtgagctgagaaggagaggggcagatccaggcaagagcacctctggtttcggggacatacatgaacgcgctggggggcctaacacaagaagtaaatcttcatcggggaaaacgtctttcaaagcttgtcagttggaaaaaatgaagagcgagagagtgaagagacacagaaaacagatactgaagggaattctgcatttcgcccaaattcacatcagatcttgtgtgaccattctggtgagaataataacaaaaggttaattaaaagcccatgctgtacaacatgttgtgatttcaagtatcttcccccacggatttacagtgcggccaaactacaatctcacaagccaagcaaaaccccagctaaaaatcccattgagcagggattaaaaaaatgggagcctggtgtgggatataatccatttgtgaacctatgtgacattttgaaagtgtcaaaagttcttgctgatcaattagattcaacgtatgtcataaacgaggaactgaaacaaaagcccattagatgttttaagagagatcatggggatctgatccatttagataaccaagatggaccatgcaccagtggagaggcaagacaatcacaggaaatcagtaatcagtacactgctcacatgattggtcagagtgctaagaacgcacccaaagtggtaaatggagcttttccagtagtgggtttagcagagattgttgacaatcagagtcatgctattgagacacagccgggaaagagaatgagattatcaactgaaataatcggcagtacacctcacgattcagagattttcagggaacctgatactgctattcaaatgggatgttcaacaactgcatcaacctctcatgagaagagacccttgtccaacaccatgctacactgttctactggcccaggacataaatcagaaaattgtaagcataaagatgcagtccagggtaacatatctcctgtagtaagccgtatagtcatggtgggggcagaggaaagcgggcaccctggagagtcttgtacagatgactctgtggatggggaaacagaagatgagaatgaaaggcccaacttttcctcctgtcagaggacaaccccttcacaggtatgggctcgcccatcctgcgcccgggtctacatctcctggccttttagggaacgattgtcctctacaaatggttgggatgtgagtgtaactagtctatctgtatcggtgccatcatccgcaaacacagcatctttagtgactcttagtgcttcacctctctataactcttctgtcactgacactcctggtagccaaaatgcatcccattcttgcgaagcggcggactcttcaccattacagggtgaagccagtgactttcgagatggctcagaacacttgagggcatctgaaacaaatggaagcatctctgaaaaacactgtgtctcagaatccttaagccttgttaatgggtctggtgtgtcagcccaaatcacgttagtgttacagcacagtgggcagtctgctgaggttgtggagctccagcaagatccaaaattatgcagttctgccacagattattcgtccaagtttgtacaggaacaaggtacttgtagggaggcgaacttggagccacaggtatgtgaatctgatcatttacgtaggcagaagttgctgcagaccaaggctcccccaaagccgtccagcaagtctgtgaatcaggctaaaagtcctaatggccttaactttccagccccttgcgcccccctcaatggcaccacgaagtctcctcacttcagttccacctggaaaaggtacatcatgccttctggtctagctcagggagaacatccccgttgtgtgagccaggcgcaaaatttgagggctcgtctggaggttagcacagcccttgcgcagggatcctctggggatgacgccagcagcatgtcctctgatgatgacctgatgaatgaggtgcttgcgccctgtggcgagatcatgtgcgagatccgggacacgggacaatcctaccgatgttccgcccctgttgaggaggggccatctggggggacaattgacttgctgaaggcctatgagcaggatgccattgtcctggatgtaattcaggatgacccggagctgtttggaaatgttcctgaagtggtgccagtcgtgaaaagtgaaacccctctggcgtctaaggtcatccatccagcgaagacatatgttgtgaagaacaaccacaagatcacttgggaggatgctcaactaagtgcaactggaagcgatgaccttgggcagcaagattccaggaaaagagtttgtagaagcatcttgcctattgaaatagatggatattctaatggtgatctgcctatgttaaatggcctagcagggggaggatttcacacagaaagcagtcttcctgtacagaagggcaccactgacagtccacagagcagtgtctgtgaatggctctggcctgattttaagaccagtttccagggaggtgccaggttgaactcaggaaaggccagtgcatgcaccagtgatgatgtatgggatgctggtttggatggtgaccctgtccagactaacgtgattaaggatctgagtgctcagagtgctgcttggacagctggatcactcagtgacctgagtgagggtagtgagatgtactgtaaattttacttcagtgaacagtacacctgttacaggaatgtgtgttggttcctgcacctacctgtagagggcgatgagaagttctgcatggctgctgtgcaaaagctcctcagtgggaaatcctctcatttactccgggcagctgcagtgtttactggatactatcggaagtgtgctcctggagtccattttgaaatgcgcacgctgaaatcactcctgtcagctctgttcaatcagggcattgtgaaagaccagctttctgtgcttagagtaatgactccatacaagatactgccaccagtagagttcatctcggcgatgttcgagcgtgtgagtgtgtggggtcttcgaatagcagtcccagaccttatagatgtgacagccaagtgcgtggaagcgggtcaggtgttcaccactgagaactttgagtacatgcaaggtcgtctggagctcctgaaaacacccagcagccagatggaagtcttcctgaacattaaatatagagttcgggagtcgtctgtagcctggacgccagaggttggagatctggctatggcacttgctgaggtggagtgctgtaaagagcagcaggactggaccaagctggggggcgtgttctgctctgtgtgcacgtccaaccccagcctggacgaactcaaccatctctgtgggaggatcgccatggtgctcctcatagacacgcctcccacctccccacttcccttctgtcagtttgtagaagcagtttgtcaaggagcttctgttggtggtttggtcaaaagcttacttggacgcatcggtgtttctttgctgttgagatattaccaaacacagcagtggacaaaggggacgaagctgctggacgccctcaatgctttgaaggtgaattactcgacgctcaagggcctgtttgcaggagacggcagcgtgtcacggtgccgggtcataagcatagccgccgaggtgcttctgggctgtgggagcatggagagcgcgctcagtgtgcttaaagataacgagtggatcctcagctcccccttgtggcagtgtgaagaggcggacgtggtgcaccgccacagcgtgctgtgtcgcctggcggagtgcgccacccagaagagcatgtttgaggagacactagagatcctgaccaatttgccagatgtgcaggatgttaaagttgatcccgcccagtacaacctcgtcttccacctacatctcaaggcctgcttagagaaaccgaatttgactgttgcttcaaacatagcagaactgatgtttacaaagaagattgaagtggatatgtgcgttctgcaattactcatacacaagcttggaaagcagaatgcttggcaaaaggcacgcattctgtacagaagtgcactatccatgggatgttacccacagacccagatgaacaagtactgccgaatcctacccatcccacactctctgagtgaagtagagatgacgcttgccctcgagatgttcatggtgtccaatgccactgacattcagaatcctggtttcttcccacatgctctacagattgtgttaaaatggaaagggggcactgaactggtcagtgagactgaccgccatgcggccattagccgcctcttgtctgcagcccaaactgcaaaccccaaactggtgatcaaatatgccacagtcaacctgaaccaggagcaggtgttcaccctggactccatttccgcctgcaagtggctctcccggaacttggactgggcctccaagctctggctgccctcagactcaaaaccagagagcaagatcagcccccaggctttatccacttagataggaggccacactactgtatataattccttcgtgtaccatatataatacacatgttcttctcaggaaaactttggaacatttgtttgatttattttttcagtttggttcaattaacttcagactcctgcttcctctgaacttgggtgggggttctggctccagttgaacttttcgtaattttgcatcgtgtttccctccatctctcaggtgaatgtttccacctgttgggtgactttccttttacagggtttattcactgaatcacctatgctgcagaaatctggcctccattgtcttggcttgacttgaagtgggtttatagttatagttggagaagtatttttatttaatcttgatttactatatatttttttttacttaatgttaagtagaagacgacatgttaatacttgtattttgtaagtagagtatatgattgcacttggaaattacgtttggccttaaaaattgatgcatttaacaatggatttaccatgtaaatcgtagtattctaattactgtacttaaggagggaattcttaatgtgttctatatttctcaaatataatagtcataaaatcaaatttcagtgcagattctggtattacagctggtaatatatctcctttaccagtaaaacaaatctgcctcaaaaaggcattttcagtttgagtttctgcatgagtttgagtgtcatcaataaaaaaactttttttgtccgata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]