2024-09-18 11:33:13, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_035129406 1836 bp mRNA linear VRT 23-OCT-2023 DEFINITION PREDICTED: Zootoca vivipara vimentin (VIM), mRNA. ACCESSION XM_035129406 VERSION XM_035129406.2 DBLINK BioProject: PRJNA1028606 KEYWORDS RefSeq. SOURCE Zootoca vivipara (common lizard) ORGANISM Zootoca vivipara Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Laterata; Lacertibaenia; Lacertidae; Zootoca. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_083287) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 23, 2023 this sequence version replaced XM_035129406.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_963506605.1-RS_2023_10 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 10/17/2023 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1836 /organism="Zootoca vivipara" /mol_type="mRNA" /db_xref="taxon:8524" /chromosome="12" gene 1..1836 /gene="VIM" /note="vimentin; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89 Proteins" /db_xref="GeneID:118091874" CDS 127..1512 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_034985297.2" /db_xref="GeneID:118091874" /translation="
MSTTSSSRSSYRRMFGGGGRPSSSSSGSRYVTSSSRYSLGSARPSSIRLSSAPGGGGVYSSKAVRLRSSLPPMRLLGDGGMDFSLADAINTEFKANRTNEKAELQELNDRFANYIDKVRFLEQQNKILLAELEQLKGKGTSRLGDLYEEEMRELRRQVDQLTNDKARVEVDRDNLAEDIMRLREKLQDEMLQREEAENNLQSFRQDVDNASLNRLDLERKVESLQEEIIFLKKLHDEEIRELQAQIQEQHIQIDVDVAKPDLTAALRDVRQQYESVASKNLQEAEEWYKSKFADLSEAASRNNDALRQAKQEANEYRRTIQSLTCEVDALKGTNESLERQMREMEENFNLEAANYQDNIARLQDEIQNMKEEMSRHLREYQELLNVKMALDIEIATYRKLLEGEESRITMPIPTFASLNLRETNLESIPIDTHSKRTLLIKTVETRDGQVINETSHHDELE"
polyA_site 1836 /gene="VIM" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggagcccgctcggccgctctcccacacctcttccacccgctgcgcgcaccggctgcccttctcgacggcgctgctctctcgctctctccctgggattgcccaccttcctcttctgggattacaaccatgagtaccaccagcagcagccggagttcctaccgccgcatgttcgggggcggcgggcggcccagctcttcgagcagcgggagccgctacgtgacgtcgtcgagccgctactcgctgggcagcgcccggcccagcagcatccgcctgtcgtcggcgcccggtggcggcggggtctactcctccaaggccgtgcgcctgcggagcagcctgccaccgatgcggcttctgggcgatggcggcatggacttctctctggccgacgccatcaacacggagttcaaggccaaccgcaccaacgagaaagccgagctgcaggagctcaacgaccgcttcgccaactacatcgacaaggtgcgcttcctcgagcagcagaacaagatcctgctggccgagctcgagcagctcaagggtaaaggcacgtcccgcctgggcgacctctacgaggaggagatgcgcgagctgcgccggcaggtggaccagctcaccaatgacaaggcccgcgtggaggtggaccgcgacaacttggccgaagacatcatgcgcctgcgggaaaaacttcaagatgagatgcttcagagggaagaagctgagaacaacctgcaatctttcagacaggatgttgacaatgcctcattgaaccgtctggatcttgaacgcaaagttgaatctctgcaagaagagattatcttcttgaagaagctccatgatgaggaaatccgtgagcttcaggcccagatccaagaacaacatatccagatcgatgtggatgttgccaaacctgatctcactgctgccctgcgcgatgtgcgtcaacagtacgaaagtgttgcttctaagaacctccaggaagctgaagagtggtacaagtccaaatttgcagatctgtccgaagcagcctcccggaacaatgatgccctgcgccaggccaaacaagaagcgaatgagtaccgcaggacaattcagagtctcacctgtgaagtggatgcacttaaaggaactaacgaatccctggaacgccagatgcgtgagatggaggagaactttaaccttgaagctgctaactaccaagacaacattgcccgactgcaggacgagatccaaaacatgaaggaagaaatgtctcgccatctgcgcgagtaccaagaactgctgaatgtaaagatggctcttgatattgagattgccacttacaggaagctgctggagggagaagagagcagaatcacaatgcccattccgacttttgcttccctgaacctgagagaaacaaaccttgagtctatcccaattgacacccactccaagagaacacttcttatcaagactgttgaaactagagatggacaagttatcaatgaaacttctcaccatgatgaactggagtgaagaagagagcagcacatcttccttgtgccgaaacgaacccttaccagcaaaactaaaaaaagagaaacagcttttcaagtgcctttctgcagttttttccaagaacgcaaggtggttatgctagaagatataggtcttagagcatgcaaaactgactctcttgatgggttagaagagcttaaaaaaagggagtctagttcagatagcactatcttgtgctgcaatactgttgtttttttaagtttctgaattgaataaaactgctttttcagcacagtatgatgagcaacctctcactgcttcaataaacatttgggaaattgc
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@meso_cacase at
DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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