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2021-01-24 06:10:41, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_034759484            4909 bp    mRNA    linear   VRT 31-MAY-2020
DEFINITION  PREDICTED: Trachemys scripta elegans testis and ovary specific PAZ
            domain containing 1 (TOPAZ1), mRNA.
ACCESSION   XM_034759484
VERSION     XM_034759484.1
DBLINK      BioProject: PRJNA634151
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Trachemys scripta elegans
  ORGANISM  Trachemys scripta elegans
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Emydidae; Trachemys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_048299.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Trachemys scripta elegans Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4909
                     /organism="Trachemys scripta elegans"
                     /mol_type="mRNA"
                     /isolate="TJP31775"
                     /isolation_source="river"
                     /sub_species="elegans"
                     /db_xref="taxon:31138"
                     /chromosome="2"
                     /country="USA"
                     /collection_date="14-Feb-2018"
     gene            1..4909
                     /gene="TOPAZ1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 4 Proteins, and 99% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:117871707"
     CDS             1..4872
                     /gene="TOPAZ1"
                     /codon_start=1
                     /product="protein TOPAZ1"
                     /protein_id="XP_034615375.1"
                     /db_xref="GeneID:117871707"
                     /translation="
MLVIFSKKKIIEVKEDSDAQDGKQLDTDLNISKDYNIKKPLVAYSESLQVAKSDGTQSKIPVCPGLKTGSAVQCNRRRNRLTKTRCLQNLDVKVTENKATKSKLVKSKGEKCRETPNYYNSLPSTVGKNPVVKLYDCRYLNTFVKSSVDATNCSYKIGGGFLHVAQGKRETFCPDSVMGQSDMNSKLNVMQMSTQKSISFDKEGICQNRKNCQNENSKCLRERKWSIDRKPRKRMKLFEKSSVRNVLPVMDNKYCEYELHTEDKTATTDPLAVLELNSNETTSSSSFDQKSNPHLEPNTQEAQNGCTASVNRKMHLKPCATEGSSENRLQLSEIAKGEKGGFDSESIEQQDRLNTSNSPEVVTLINDNISDYYNDVSCQKKERIVSNEKLISNVEKLQLYSCQRIIPMSGKNVWPRESCARTSEWFHKNHVSVLEGKTSTSGSQECSYENNTEAVRDMVLTDNSRQLELSMLEAESVKESACKITMDSNIECLTSVRTPESSLLDICGTLRVTCNENLESSVDSSPIASKSEAVHEAQMILNLAVKQKQDDKNKGALAKKNLMMALHDGISEDDNTSKMIVNHKTSMMKKTVTIPNLMKMLYPGNLSNFKIPLRKNKTESRKVDCIRSLDKETYSPLERLHKSAAASARQNRAEENSSIVVSEQQPISEEADISVIPSKENAYQMSSKDFGSGGSESLSNEINILSEHVSTYQCAFLEGELESSALEDVTDSSATAPIEQSRTLDCSSKTVDHSVSLEMHDDDKKKSRMDLAQSKIKNFPDVLKAYEDDILVIDVIQDDPDLFGTTDEGELAFTMNHVTEKHCNISTTSEEKQDVKPKCLILPETKDSRDYFRESPIQESGTLKSVTDSYDALLMANKIQKHDSSSGSCPLGGVIEESFEDGQLIESDELLKDFHMDEKYRFSGKSDAIKEEKVNIHEAEKSNDSKYIEFVSSELQLGLQLPSLQINAYQEETVLKPWISDFRYSGKSSLLPLPNSDCLEPWKMDKNVVVSHLIQQNLGMIELPRKYCRFYFNTLRGCERVECWFWHVPEQGDEKICMAILKTYININESSLLQRSVQIFMNYYREVAPGVHFDSQVLNDLLISLIKCCLLKEVFQLLNVAVMIKMLPAVDVFLKVFEHVASMNIRDAMPSLIDIFYKLFDAGMVFELEHFNCIVKFLHQLQVSSQEINVILNMKSRFQARQFKKNWLCDLNLAIAEIQLCKEKGDWAKLGTLYVNMRIGCENFGDLQKLTLYIADMLTRDSKEERPGVPFCEFAEAVIKNPQYNEADKDFLGRIGISVMYSYHTVQQWSKGRKVLDKLHELQIHFTSLKGLIGPERLASRCQIVNAAAEIFLKSGSLDGATWVLRESEWIINTPLWPCDRMDVLNRHNLLCAIACECLTKNLYRQAFEVLQNLPGFQNCCDTLDVSQYSLLFNKLLDSCIESKGLGISSSVTDFMLSKNIPIDFTLIRGLITALGRSCLWLKARIYYKSALSLGCYPPLEGNLYRKLLLIPSYLSEIEMLLAIEIFLVSNASNIQSPGATNQILQIVLKRSEEQKVRSKDDYQAAVERLIQAARISNPKLFLKHMTMNINMEQVYSLEHNSALKWLKENMKWAGKVWLFSSH"
ORIGIN      
atgctagttattttctcaaagaaaaaaataatagaagttaaggaagactcagatgcacaggatggaaagcagctagacactgatctaaatatatcaaaagattataacataaagaaaccactagtagcttactctgaatctctccaggtagctaagtcagatggaactcagagcaagataccagtatgcccgggtttaaagacgggatctgcagtacagtgtaacaggagaagaaatagactcaccaagaccaggtgtttacagaatttggatgtaaaagtaactgaaaataaagcgacaaagagcaaactggtaaagtctaagggtgaaaagtgcagagaaaccccaaattattataatagcttgccatccacagtaggaaagaatccagttgtaaaattatatgactgtcgttaccttaatacatttgtaaagtcttcagttgatgcaaccaactgcagttacaaaattggtggtggattcttgcatgtagcacagggtaagagagagactttttgtcctgacagtgttatgggacagagtgatatgaatagcaagcttaatgtaatgcagatgtccacacagaaaagtatatcatttgacaaagaaggaatatgccaaaatagaaaaaattgtcaaaatgaaaacagtaagtgcttgagggaaagaaagtggagtattgatagaaagcccaggaaaaggatgaaactttttgaaaaatcatcagtccggaatgttctcccagttatggacaacaaatactgtgaatatgagttacatacggaagataaaactgccacaacagaccctttagcagttctagagttaaatagcaatgaaactacttcctcatcttcgtttgatcaaaaatcaaatccccatctagaaccaaatactcaagaagcacaaaatggttgtactgcctcggttaatagaaaaatgcacttgaaaccctgtgcaacagaaggtagttctgagaatagacttcagctatctgaaattgcaaaaggagaaaagggtggttttgattcagaaagtatagaacaacaagaccgcttgaatacctcaaatagtccagaagtggttactttgattaatgacaacatttctgattactacaatgatgtcagttgccaaaagaaagagaggatagtgtcaaatgaaaaactgataagtaatgttgagaaattacagctatatagctgtcaaagaataataccaatgtctggtaaaaatgtttggcctcgtgaatcatgtgctaggacttctgaatggtttcataaaaatcacgtgtctgtcctggaaggaaaaacttcaacttctggttctcaggaatgctcatatgaaaacaataccgaagctgtaagagatatggttttaactgataactccaggcaattagagctaagtatgttagaggcagaaagtgtcaaagaatctgcatgtaaaataacaatggattctaacattgaatgtctgacttctgttagaacaccagagtcgtcattattggatatttgtgggactttgagagtcacctgtaatgaaaatctagagtcatcagtggatagtagtcccatagcttctaagtctgaagctgtccatgaagctcagatgatcttaaatttggcagtaaaacaaaaacaagatgataaaaacaaaggcgctttagcaaagaaaaatctgatgatggcactccatgatggtatatctgaagatgacaatacaagtaaaatgattgttaatcataagacatcaatgatgaaaaaaacagttacaattccaaacttaatgaaaatgttatacccgggaaatctatcaaatttcaaaattcctttacgcaaaaataaaactgaatccaggaaagtggactgtattagatcattagataaagaaacatacagtccactggaacgtcttcacaaatctgctgctgcttcagcaaggcagaacagagccgaggagaattcctctatagtagtctctgagcagcaacctatctctgaagaggcagatatctctgtaatcccctcaaaggaaaatgcttaccaaatgagcagtaaggactttggcagtggtggttctgaaagtctttcaaatgaaataaatatactttctgaacatgtttctacatatcagtgtgcttttcttgagggagaattggagtcatctgctcttgaggatgttactgactcttctgctactgcacctatagagcaaagtcgcacactagattgttccagtaaaacagttgaccattctgtttcattagaaatgcatgatgatgataaaaagaagtcaagaatggatcttgcacagagtaagattaaaaactttccagatgttcttaaggcttatgaagatgatattcttgtgattgatgtaattcaggatgaccctgacctttttggaaccactgatgaaggggagcttgcattcacaatgaaccatgtgactgaaaagcactgtaatatcagtactacctcagaggaaaaacaggatgtcaagccaaaatgccttatccttccagaaactaaggattcaagggattactttagagagagtcccattcaagaatctggaacattgaaatctgtcacagattcatatgatgcactgctaatggctaataagattcaaaaacatgattcctcaagtggaagctgtcctttgggaggtgtaattgaggagtcttttgaggatgggcagctgattgaatcagatgaactcttaaaggattttcatatggatgagaagtacagattttcaggcaagtcggacgctataaaagaagaaaaagtaaatattcatgaagctgaaaaaagcaatgattctaaatatatagaatttgtgagcagtgaacttcagttaggattgcaactgccatccctgcaaataaatgcctaccaggaagagacagtactgaaaccctggatcagtgatttcagatactcaggaaaaagctctcttttgccgttgccaaattctgactgtttagaaccatggaaaatggacaaaaatgtggtggtttcccatctgatccagcagaaccttgggatgattgagttgccccgtaaatattgcagattttatttcaatacattgcgtggctgtgagagagtggaatgttggttttggcatgttcctgaacaaggagatgaaaagatttgcatggcaatacttaagacgtatataaatatcaatgaatcaagtttgctacaacgttcagtccagatatttatgaattactacagagaagttgctcctggtgtgcattttgattcacaagtgctgaatgatcttctcatttctttgatcaagtgttgtttgttgaaagaagtatttcagttgttaaatgttgctgtaatgattaaaatgctgccagctgttgatgtattcctgaaggtgtttgagcatgtggcttccatgaatataagagatgctatgccttcattaatagatatcttttataagctttttgatgctgggatggtttttgagcttgaacattttaactgtattgttaagttccttcaccaactgcaagtttccagtcaagaaattaatgttattttgaacatgaaatcaagatttcaggcaagacagtttaaaaagaactggctttgtgacttaaatttggcaatagctgaaattcagctctgtaaagaaaaaggtgactgggccaaattgggaactttatatgttaatatgagaataggatgtgaaaattttggtgaccttcagaaattgactttatatattgctgacatgctaacaagagactccaaggaagagagaccaggagttcctttttgtgaatttgctgaagcagttatcaaaaatccacaatataatgaagcagacaaagatttcctgggaaggattgggatcagtgtaatgtattcttatcacacagtacagcaatggtcaaagggcaggaaggttttggataaactacatgaactgcagattcatttcacaagcttgaaaggacttattggtccagaaaggttagcctcaagatgccaaattgttaatgctgctgcagaaatcttccttaaaagtggaagtctggatggagcaacatgggtattgagagagtcagaatggataataaatacaccattgtggccctgcgatagaatggatgtcctcaatcgacacaacctgctgtgtgcaattgcatgtgaatgtttgaccaagaatctatatagacaagcatttgaagttctgcagaatctaccaggtttccaaaattgttgtgacactctagatgtttcccagtacagccttctttttaacaaacttcttgattcctgtattgagagcaagggccttggtatatcttcttctgtaacagactttatgctgtcaaagaacatccccattgattttactttaattagaggattaattacagcattgggaaggagctgtttgtggcttaaagccaggatctattacaaaagtgctttatcattgggttgctacccaccgctagagggaaatttataccgcaagcttttactgattccttcttacctgtctgagattgagatgttgctggccattgaaatattcctagtttcaaatgctagtaatattcagagtccgggtgccaccaatcagatacttcagatagtactgaaaagatctgaagaacaaaaagtgcggagtaaagatgactatcaagcagcagttgagagactgattcaagctgctcgtatatctaatccaaagctttttcttaagcacatgacaatgaatattaatatggaacaggtttacagtttggaacataattctgctctgaaatggctgaaagagaatatgaaatgggctggaaaggtctggcttttcagtagtcattagttggtaaagacttttttttttttttttttaatagttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]