2021-01-24 05:47:50, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS XM_033992496 2540 bp mRNA linear VRT 05-JUN-2020 DEFINITION PREDICTED: Acipenser ruthenus testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X1, mRNA. ACCESSION XM_033992496 VERSION XM_033992496.2 DBLINK BioProject: PRJNA635364 KEYWORDS RefSeq. SOURCE Acipenser ruthenus (sterlet) ORGANISM Acipenser ruthenus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Acipenseridae; Acipenser. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_048326.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Jun 5, 2020 this sequence version replaced XM_033992496.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Acipenser ruthenus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2540 /organism="Acipenser ruthenus" /mol_type="mRNA" /isolate="Gen_M01" /isolation_source="water" /db_xref="taxon:7906" /chromosome="4" /tissue_type="testis, blood" /country="Germany: IGB" /lat_lon="52.448940 N 13.648750 E" /collection_date="2018" gene 1..2540 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:117394339" CDS 20..1594 /gene="topaz1" /codon_start=1 /product="protein TOPAZ1 isoform X1" /protein_id="XP_033848387.2" /db_xref="GeneID:117394339" /translation="
MTRLLYRLLNESQMKEVFTVLQIVVLVKMLPPSDLLLQVFQRVTLLGLRKAVPSLIDVTCKCVDAGLELTVENFNYMQRQLDLLQAPREEIDVFLAVKSRLLEKQATRNEQFDLDVAVAEVEHCKEQQDWAKLGTIFINVCLGYRNLGELNRFCSCIASSLIKDVKETPMIPFREFAEKVCQEPHVSGLDKSLLGRIGISVLFGYYKAQHWTKGRRLLDTLHGMKIHFSTLKGLLGNDCYASRCQILNIAAEIYLNSGNLEKAVSVLKESDWIISTPVWPCDNMDVLNRHNLLCRMAEESAIKNLHREALEVLKKLPGLQNFSDNVDVSRYTMIFNRHLSACIENQNLAVSSNTVDFMTSKSIPVDFSLLRKLIFKLGKNSLWLKARSLYKSAVSMGCYPALQGNLYCRILSIPYSLSEIEMMLAFEMFIVSNAGNIQNPSPFNQALQIVLKRKEEDDVCLSDNDYHAAMSRLMLAAQNTNPKLGIKYATVNVCKEQVFTLDHLSALKWLNKNMKWAGKVWLFS"
ORIGIN
tcattttaattccgaagtcatgacccgtctgctgtacagattgcttaatgagagtcagatgaaagaagtcttcacagtgcttcaaattgttgtgctggtcaaaatgttgccaccatcagatcttctacttcaagtatttcagcgtgtgaccttattgggcctcagaaaagcagtaccaagtctgattgatgtaacatgcaagtgtgttgatgcaggcttggagctcacggtagagaactttaactacatgcagcgacaacttgatctactgcaagcaccaagagaggagattgatgtctttctagcagtcaaatcaaggttactggagaaacaagctacgagaaatgagcagtttgatctagatgttgcagttgctgaagtggagcattgtaaagaacagcaagactgggcaaagctgggaacaatcttcattaatgtgtgcctcggttacagaaatcttggtgaactcaacagattctgtagttgcattgcatcctcacttataaaagatgtaaaggaaacacctatgattccattccgtgaatttgcagaaaaagtgtgtcaagaaccccatgtaagtggattagacaaaagcttacttggcaggattggaatctctgtattgtttgggtactacaaagcacagcattggaccaagggaagaagattgctagatactttgcatggaatgaagattcatttttcaacactgaaagggcttcttgggaatgattgttatgcatccagatgccagattctaaatattgctgcagaaatctacctgaacagtgggaatctggaaaaagcagtatcagtgttaaaagaatctgattggataatcagcacacccgtgtggccttgtgacaacatggatgtcctgaaccgccataacttactttgtagaatggcagaagaaagtgcgatcaagaacttgcacagagaagctcttgaagttttgaaaaaactgccagggctccagaatttctcagataatgtggatgtttcccgttatacaatgatattcaacagacatttaagtgcttgcattgagaaccagaatctggctgtgtcttccaatactgttgatttcatgacttcaaaatcaattccagtggatttttccttgcttagaaagttaatttttaaattaggaaaaaacagtctttggttgaaagctagatccctctacaaaagtgctgtctcgatgggttgttacccagcactccaggggaacttgtactgcagaattctttccattccctattctctgtctgagattgagatgatgttggcctttgaaatgtttattgtttcaaatgcaggcaacattcagaaccctagtccttttaatcaggctcttcaaattgtacttaaaaggaaagaagaagatgatgtatgtctcagtgacaatgactatcatgcagcaatgagcagactaatgttagctgcccagaataccaacccaaaactgggcatcaaatatgcaacagtaaatgtttgcaaggaacaggtgttcactttagatcatttatcagcactaaaatggctaaacaagaatatgaagtgggcaggaaaagtctggttattttcatagtgctggagcataaatttattttggagattacttttgtttaattgaagcctgtaaataatgtgcaggttgttctatttaaaataaagcaagaatgctctattttacacacacacaaaaaaaaacctaaatcttatttcaattctacaaaacatagcttattagtttgcaccagaaaagtaaagtgtgaatttcagttctagtactggaagttaatctttctgtatgtttaagtttaaagaaaagtttaactgaagaaaaacacagctactttagagaatgagagttagtttcctagatatgaaagatatctaagttagtactgtatatagttattgaacttaccattcttttttttataattttattttattctatcgagattctgccagtttgattgttatagggtaatttaataaatatactctatttaaaattagaaacggatataatggctatattgtttatagattacatcaaagggttgggcatatacaagcacacacaccacacatgcatgcattatgcagatacagacagatggtgcatgcaaatatacattttgaaataagcacagcaggtatgacaacatgatgcagtgttttattttttccaatagaatggcaaagacattcctgataggctttaaagtttaatttaagcatgtttgctaaaaaggaggtaggtggttcaaaataataaataaaaagttgaacagaactgatttgttaaactatacaataacggtctgttttgactgggtaataaagttttttgtatacatgtaatgtatatgtacataagcaataaagattaatttgtttggtcttttaatgagtcctttcaacatttctacaatttttaaaaataattaatgtatatgaagcatacgtgggatccttggagggggttaaattataaaatactggccattgtaacaagaaaaaat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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