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2024-03-29 01:37:57, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033728383            3431 bp    mRNA    linear   PLN 21-APR-2020
DEFINITION  Mytilinidion resinicola putative RNA interference and gene
            silencing protein (BDZ99DRAFT_574506), partial mRNA.
ACCESSION   XM_033728383
VERSION     XM_033728383.1
DBLINK      BioProject: PRJNA625774
            BioSample: SAMN05446164
KEYWORDS    RefSeq.
SOURCE      Mytilinidion resinicola
  ORGANISM  Mytilinidion resinicola
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Dothideomycetes; Pleosporomycetidae; Mytilinidiales;
            Mytilinidiaceae; Mytilinidion.
REFERENCE   1  (bases 1 to 3431)
  AUTHORS   Haridas,S., Albert,R., Binder,M., Bloem,J., LaButti,K., Salamov,A.,
            Andreopoulos,B., Baker,S., Barry,K., Bills,G., Bluhm,B., Cannon,C.,
            Castanera,R., Culley,D., Daum,C., Ezra,D., Gonzalez,J.,
            Henrissat,B., Kuo,A., Liang,C., Lipzen,A., Lutzoni,F., Magnuson,J.,
            Mondo,S., Nolan,M., Ohm,R., Pangilinan,J., Park,H.-J., Ramirez,L.,
            Alfaro,M., Sun,H., Tritt,A., Yoshinaga,Y., Zwiers,L.-H.,
            Turgeon,B., Goodwin,S., Spatafora,J., Crous,P. and Grigoriev,I.
  TITLE     101 Dothideomycetes genomes: a test case for predicting lifestyles
            and emergence of pathogens
  JOURNAL   Stud. Mycol. (2020) In press
  REMARK    DOI: 10.1016/j.simyco.2020.01.003
REFERENCE   2  (bases 1 to 3431)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (17-APR-2020) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 3431)
  AUTHORS   Haridas,S., Albert,R., Binder,M., Bloem,J., Labutti,K., Salamov,A.,
            Andreopoulos,B., Baker,S.E., Barry,K., Bills,G., Bluhm,B.H.,
            Cannon,C., Castanera,R., Culley,D.E., Daum,C., Ezra,D.,
            Gonzalez,J.B., Henrissat,B., Kuo,A., Liang,C., Lipzen,A.,
            Lutzoni,F., Magnuson,J., Mondo,S., Nolan,M., Ohm,R., Pangilinan,J.,
            Park,H.-J., Ramirez,L., Alfaro,M., Sun,H., Tritt,A., Yoshinaga,Y.,
            Zwiers,L.-H., Turgeon,B.G., Goodwin,S.B., Spatafora,J.W.,
            Crous,P.W. and Grigoriev,I.V.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (27-JAN-2020) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_022985454).
            
            ##Metadata-START##
            Organism Display Name :: Mytilinidion resinicola CBS 304.34 v1.0
            GOLD Stamp ID         :: null
            ##Metadata-END##
            COMPLETENESS: incomplete on the 5' end.
FEATURES             Location/Qualifiers
     source          1..3431
                     /organism="Mytilinidion resinicola"
                     /mol_type="mRNA"
                     /strain="CBS 304.34"
                     /culture_collection="CBS:304.34"
                     /type_material="type material of Mytilinidion resinicola"
                     /db_xref="taxon:574789"
                     /chromosome="Unknown"
     gene            <1..3431
                     /locus_tag="BDZ99DRAFT_574506"
                     /db_xref="GeneID:54469276"
     CDS             1..3042
                     /locus_tag="BDZ99DRAFT_574506"
                     /codon_start=1
                     /product="putative RNA interference and gene silencing
                     protein"
                     /protein_id="XP_033572571.1"
                     /db_xref="GeneID:54469276"
                     /db_xref="InterPro:IPR003100"
                     /db_xref="InterPro:IPR003165"
                     /db_xref="InterPro:IPR014811"
                     /db_xref="JGIDB:Mytre1_574506"
                     /translation="
MSAPGGRGFGGNRGTSRGGRGFGDRGGYRGGRGPGGAGRGGGGGRGPVQEEVQIYVPPDKVIPAPDARVAEVEDAIQKSAGGPAALAALTLTEGFPHRPGYGTRGTPVKLWANYVEMIPPPDLMLYRYDIAVSPSAAGKKLTQIVRLLLETEALAQFRSDLITDFKSTLLSCRKLESDEFLVRIRYRAEDQDEPREEATQYQARVRYTNALSTAQLVDYLESTNLSQPLDDMQPLVQGLNIFLNHYAKSTGALATIGASKTFSLGPSAAKWDLGAGLTALRGYFTSVRLATCRILVNVNVSHGAFYEAIPLEQLISKYGAAHNYNKGRLEKFFGKLRIRTTHLPEKKNKAGQIVHRVKTIFGLANKNDGHGLAHPPRVSEYGAGPKDVEFWLDNPSQSSSSSIAAKGGGKKKGKTGGPSGAPKPALGGRYISVYDFFLQTYNIAVANPRVPVVNVGNRANPTYLPAQVCHVMPGQNSKSKLDAGQTQQMIRFAVRRPGDNATSIVQEGLETAGLSPRTNALLTDFNFSVPPKLITVTGRVLIEPKVNYKQKTASVRLGSWNMVNFKFNTAGSLKNWSYVMVSTPGKRDAFDEQGLTEVIGKFHRTLLDVGITASQPVKGKRISITGPDDPQLENTIKSAANAKFALLFIVLPSDNASEYYRIKQYADVKYGIHTICSFGDKLAKERGQDQYFKNVALKFNLKLGGINQLVDNSRLGIINADKTMVVGIDVTHPSPGSTSNAPSVAGMVASVDRWLGQWPAVLRIQGQARDEMVTDLGDMLKSRLKLWKEKGKHPAFPENILIYRDGVSEGQYSKVMNEELPLLRSACKDVYPVPDQKKGLPNITIIVVGKRHHTRFYPTQLEQSDKLNPKPGTVVDRGVTMARNWDFFLQPHSALQGTARPAHYYIVLDEIFTRHYKTAVPAPFKNVADVLEDLTHTMCYLYGRATKAVSLCPPAYYADIVCERARCYLNDVFDTPTHSAAPSVAGSAQGRESLVGNEDVLIHPKLRDSMFYI"
     misc_feature    484..729
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    769..921
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    <1279..1413
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    1564..2907
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1975..1977,1987..1989,2023..2034,2041..2043,
                     2071..2073,2080..2082,2092..2094,2104..2106)
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2185..2187,2191..2193,2413..2415,2875..2877)
                     /locus_tag="BDZ99DRAFT_574506"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
atgtcggcgccaggcggacgaggattcggaggcaaccgcgggacgagccgtggaggccgtggttttggagatcgcgggggctatcgtggcggacgtgggcctggtggagctggccgcggcggtggtggtggccgcgggcctgtccaggaagaggtacaaatctacgtaccaccagacaaagttatcccagcgccggatgcgcgcgtcgcagaggttgaggatgccatccaaaaatcggcgggaggtccagctgctcttgccgcactgactctgactgagggattccctcatcgacctggctatggtaccagaggcacccctgtgaagctgtgggccaactatgtcgagatgattcctccgccggatctcatgctgtatcgatacgatatagctgtatcgccaagcgccgcaggtaagaagttgactcagattgtgcgtctcctgttagaaacagaagcgttggcccaattccgctcggacttgatcacagacttcaaatctactctgctatcgtgccgtaagttggagagcgacgaatttctggtccgaatcagataccgtgctgaagatcaggacgaaccccgggaggaagccactcagtaccaggcccgggttcgatacacaaatgccctgtctaccgctcagctcgtggactatttggagtccactaacctgtcacaacctcttgatgacatgcagcctctcgtccagggcttgaatatattcctgaaccattacgcaaaatcaactggggccttggcgacgataggcgccagcaagaccttctctctcggcccttcagccgccaaatgggatctaggcgccggcctaaccgccttacgaggctacttcactagtgtccgacttgcaacctgtcgaatcttggtcaacgtgaacgtcagccatggagctttttatgaagcaataccactcgagcagttgatatcgaagtatggagctgctcataattacaacaagggcagattggaaaagttctttgggaaactccggattcgaacaactcatctgccggaaaagaagaacaaagcagggcaaatcgtccatagggtgaagactatctttggacttgccaacaaaaatgacggtcacggtctcgctcatccaccgagggtaagtgagtacggggctggtccaaaggatgtggaattctggcttgacaatccgtctcaatcgagcagttcatcaatagctgccaaaggtggcggtaagaagaaggggaaaacgggaggtcctagcggagccccaaagccggccttgggtggccgatacatcagcgtatacgactttttcttgcagacttacaacattgccgttgccaatccgagagttccagtggtcaatgtgggcaatagagccaacccaacctacctccccgctcaagtttgccatgtcatgcctggacagaattcgaagtcgaaacttgatgccggccaaacccaacaaatgatacggtttgcggtaaggcgaccaggggataatgctacttcgattgttcaagaaggattggagactgccggcctttctccccgcactaatgcccttctgactgacttcaatttttcggtcccgccaaagttgatcaccgttacgggacgcgttcttatcgaacctaaagtcaattacaaacaaaagaccgcttcagtacgtttgggcagctggaatatggtgaatttcaaattcaacactgccgggtctctgaagaattggtcgtatgtcatggtttcaacacctgggaagagggatgcattcgatgagcaaggcttgactgaagtgattgggaagttccatcgcacgctgctggatgtgggtatcactgcaagccaaccagtcaaaggcaaaagaatatcgataaccggacccgacgaccctcagcttgaaaataccatcaaaagcgctgctaatgccaagttcgccttgttgttcattgttctcccgagcgacaatgcttcagaatattaccggatcaagcagtacgccgacgtcaaatacggaatccacacaatctgcagctttggggacaagcttgccaaagagagaggccaggatcagtacttcaagaatgttgcgctgaagttcaacctgaagctcggtggaatcaaccaacttgtagacaattctcggcttggcatcatcaacgcggacaagaccatggttgtggggatcgacgtcacacatccatctccaggctccacgtccaacgcaccaagcgtggctggcatggtcgccagcgtggacagatggctcggtcaatggcccgccgtgctgcgcatccaaggccaggcccgcgacgaaatggtcacggacttgggcgacatgctgaaatcacggctcaaactctggaaggagaaaggaaagcacccggccttccccgaaaacatcctcatctaccgcgacggcgtatccgaaggccagtacagcaaagtcatgaatgaggaactgcccctcctccgcagcgcatgcaaagacgtctacccagtccccgaccagaagaagggcctcccaaacatcaccatcatcgtagtcggcaagcggcaccacacgcgcttctaccccacgcaattggagcagtccgacaaactgaacccaaagccgggcacagtcgttgatcggggcgtgaccatggcccgcaactgggatttcttcctgcagccacactcggcgttgcagggtaccgcgcgcccggcccactactatatcgtgctggacgagatcttcacccgccactacaagaccgccgtcccggctccgttcaagaatgtcgcggatgtgctggaggatctgacgcacaccatgtgctatctgtacggccgggcgaccaaggcagtgagcttgtgtccgccggcgtactatgccgacatcgtgtgcgagcgggctcgctgctatctgaatgatgtgttcgacacgccgacgcattcggcggcgccgtcggttgcggggagcgctcaggggagggagtcgctggtggggaatgaggatgtgttgatccaccccaagttgcgggatagtatgttctatatttgagctctccccttagtatactatcactaagcccctctcattcgatatcatactaaccgagctggattttggttgggagagtggtcccgacgtggccctcggacgctcctttttcgggctggttcaggctgttttaggatagactggtttacaaatccaccacacgtgactttacgtagagtgatattttctatacagtgataaacccttagtcacgaacccgtatcactcactatacgaaggctttactgtatcgactacaaggtcatcctggcggggtgagaatcgagggttttcagcggcacatccggctttggcgtgacggttgactcagcggatgcagattgctgagcaccttcgtatgaattcagaatctcgtcaaagagctcgct
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]