2024-04-25 07:08:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033645987 2447 bp mRNA linear VRT 20-APR-2020 DEFINITION PREDICTED: Epinephelus lanceolatus SEC14-like lipid binding 7 (sec14l7), transcript variant X1, mRNA. ACCESSION XM_033645987 VERSION XM_033645987.1 DBLINK BioProject: PRJNA625542 KEYWORDS RefSeq. SOURCE Epinephelus lanceolatus (giant grouper) ORGANISM Epinephelus lanceolatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae; Epinephelinae; Epinephelini; Epinephelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047007.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Epinephelus lanceolatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2447 /organism="Epinephelus lanceolatus" /mol_type="mRNA" /isolate="Andai001" /db_xref="taxon:310571" /chromosome="17" /sex="female" /tissue_type="blood and muscle" gene 1..2447 /gene="sec14l7" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns" /db_xref="GeneID:117269166" CDS 102..1316 /gene="sec14l7" /codon_start=1 /product="SEC14-like protein 2 isoform X1" /protein_id="XP_033501878.1" /db_xref="GeneID:117269166" /translation="
MSGRVGDLSPKQAEILTEFRGRIQDILPNLPAQHDHYLLRWLRARSFNVQKAETMIRKHLEFRKKMNIDSIISDWKPPEVIDKYVSGGMCGYDREGSPIWYDVIGPLDPKGLLLSATKQDFMKTKIRHTEMLQRECQRQSEKLGQNVEAITLIYDCEGLGLKHIWKPAIETYGEILTMFEDNYPEGLKRVFLIKAPRMFPMAYNLIKHFLCEETRRKIIVLGSNWQEVLRKHIDPEQLPVVYGGTLTDPDGDPRCRTMIKYGGTVPKSYYVQDSVKVQYDSSVTISRGSVLQLEYDVTAASSLLRWQFASDGADIGFGVYRRTKEGVGQKVAEMLQVLPSERYNAHLVPEDSGLTCSEPGVYVLCFDNSYSILQSKRVSYKVEVLPPPDGQMQSPRSRGDGRLQ"
misc_feature 138..278 /gene="sec14l7" /note="CRAL/TRIO, N-terminal domain; Region: CRAL_TRIO_N; smart01100" /db_xref="CDD:215024" misc_feature 330..839 /gene="sec14l7" /note="Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p); Region: SEC14; smart00516" /db_xref="CDD:214706" misc_feature order(393..395,399..401,405..407,495..497,561..563, 567..569,615..617,627..629,639..641,651..653,660..662, 669..671,675..677,696..698,717..719,753..755) /gene="sec14l7" /note="phospholipid binding pocket [chemical binding]; other site" /db_xref="CDD:238099" misc_feature order(654..656,750..752) /gene="sec14l7" /note="salt bridge; other site" /db_xref="CDD:238099" misc_feature 954..1247 /gene="sec14l7" /note="Golgi-dynamics membrane-trafficking; Region: GOLD_2; pfam13897" /db_xref="CDD:433565" ORIGIN
tgtgtgtgtaggaggcgtggtgtttactcgtcgacctgcaggttccctccggcgctcacttcattcacagcctctgtcagagcgacacagcagcagcagacatgagcggacgagtgggagacctgagccccaaacaggctgagatattaactgagtttcgggggaggatccaggacatcctccccaacctgcctgcacagcacgaccactacctcctccgctggctccgagctcgtagcttcaatgttcagaaagctgaaactatgatcagaaagcatctggagttcaggaagaagatgaacattgactccatcatatctgactggaaacctccagaggtgattgacaagtacgtgtctggagggatgtgtggatacgacagggagggcagtcccatctggtatgatgtcatcggccctctggaccctaaaggtctgttgctatcggcaaccaaacaagacttcatgaagacgaagatcagacacactgagatgctgcagagggagtgtcagaggcagtcggagaagttggggcagaacgttgaagcgatcactctgatctatgactgtgaaggactcggactgaaacacatctggaaacctgccatagagacgtatggagagatcctcaccatgtttgaagacaactatccagagggcctgaagagggtgtttctgatcaaagctccgagaatgtttcccatggcctacaacctcatcaaacacttcctgtgtgaggagacacgacggaagatcatcgttttaggaagtaactggcaggaagtgttacgtaaacacatcgaccccgagcagcttcctgtggtgtacggaggaaccctgactgatcctgatggagaccctcgctgcagaaccatgataaagtacggcggcacagttcccaagtcgtactacgttcaggactcggtgaaggttcagtacgacagcagcgtgaccatcagccgaggctccgtcctccagctagaatatgatgtcacagcagccagcagcctcctgaggtggcagtttgccagcgacggagcggacatcgggttcggagtgtacagacggaccaaagagggcgtcggacagaaagtggctgagatgctgcaggttctgcccagcgaacgctacaatgcacacctggtccctgaagacagcggcctcacctgctctgagcctggagtctacgtgctgtgtttcgataacagctacagcatcctgcagtccaagagggtgagctacaaagtcgaggttcttcctccgccggacggacagatgcagagtccacgcagccgaggagacggcaggctgcagtgagcgggagcacagagttcactgagtatcaccagtcactgacagcaaaatcaatacacttacatcagggcaaaaaacaactgtggacttcctgtcaacacctctgtttgtcccactgtacgcatcatatatgtgttagtttataatcagtaattatccctcaataacttgtttatagagcagtcttttacaatgcagctgataaccacttgtgccctacctgcagacacaggctgatgaacgtagtgaagcatttagcatctaaatgtttccctcaaaagttcctgtattgttattgtaacaagatcgactacagctgctttaaatacaaattattagccgcagcaccggtgatagctgtggacgaagcattatgttttcaggttttccatctgtccatccatccttgtgatatctcaaggaacggctcaagggaatttcttcaaatttcccacaaatgtccacttggactcagcaatgaactgatacgtttttggtggtcataggtcaaagatcaaggtcactgtgaccttgtctgtttcatttctccaaaacacctcaaggaaatttcattgaaaatttgacacaaatgtccactttgactgaaaaataaactgatgagaattaggtggtcaaaggtaaaaggtcaaggtcactgtgaccttcctttctcattcttgtgcaaaaagtatctcattaacacctaatgggaattttttcaaatttggaacaaatgttcacttggactctatgaacaggttagagttgatggtcaaaggtcaaggttactgtgaccttgcatctgtctcattcttgtgaatgtgatatctcaagagcactataaggacatttctttacatttggcacaaacgtccactgtagaataatctggctagaagtttgtggtcaaaggtcaagatctgtgtgactttgcatctgtctcattcttgtgaatgcgctatcttaataacttgaggggatttcttcaaatttggcacaaatgttcactaggactcaaccataatctgattggatttcagtggtcaaaggtcagaggtcaaggtcactgtgaccttgcttctgtctcattcttgaaatgcgatatctcaaaaacaccttgagggaatttcttca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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