GGRNA ver.2 Home | Help | Advanced search    Previous release (v1)

2024-04-25 07:08:43, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_033645987            2447 bp    mRNA    linear   VRT 20-APR-2020
DEFINITION  PREDICTED: Epinephelus lanceolatus SEC14-like lipid binding 7
            (sec14l7), transcript variant X1, mRNA.
ACCESSION   XM_033645987
VERSION     XM_033645987.1
DBLINK      BioProject: PRJNA625542
KEYWORDS    RefSeq.
SOURCE      Epinephelus lanceolatus (giant grouper)
  ORGANISM  Epinephelus lanceolatus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Eupercaria; Perciformes; Serranoidei; Serranidae;
            Epinephelinae; Epinephelini; Epinephelus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047007.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Epinephelus lanceolatus Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2447
                     /organism="Epinephelus lanceolatus"
                     /mol_type="mRNA"
                     /isolate="Andai001"
                     /db_xref="taxon:310571"
                     /chromosome="17"
                     /sex="female"
                     /tissue_type="blood and muscle"
     gene            1..2447
                     /gene="sec14l7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 17 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:117269166"
     CDS             102..1316
                     /gene="sec14l7"
                     /codon_start=1
                     /product="SEC14-like protein 2 isoform X1"
                     /protein_id="XP_033501878.1"
                     /db_xref="GeneID:117269166"
                     /translation="
MSGRVGDLSPKQAEILTEFRGRIQDILPNLPAQHDHYLLRWLRARSFNVQKAETMIRKHLEFRKKMNIDSIISDWKPPEVIDKYVSGGMCGYDREGSPIWYDVIGPLDPKGLLLSATKQDFMKTKIRHTEMLQRECQRQSEKLGQNVEAITLIYDCEGLGLKHIWKPAIETYGEILTMFEDNYPEGLKRVFLIKAPRMFPMAYNLIKHFLCEETRRKIIVLGSNWQEVLRKHIDPEQLPVVYGGTLTDPDGDPRCRTMIKYGGTVPKSYYVQDSVKVQYDSSVTISRGSVLQLEYDVTAASSLLRWQFASDGADIGFGVYRRTKEGVGQKVAEMLQVLPSERYNAHLVPEDSGLTCSEPGVYVLCFDNSYSILQSKRVSYKVEVLPPPDGQMQSPRSRGDGRLQ"
     misc_feature    138..278
                     /gene="sec14l7"
                     /note="CRAL/TRIO, N-terminal domain; Region: CRAL_TRIO_N;
                     smart01100"
                     /db_xref="CDD:215024"
     misc_feature    330..839
                     /gene="sec14l7"
                     /note="Domain in homologues of a S. cerevisiae
                     phosphatidylinositol transfer protein (Sec14p); Region:
                     SEC14; smart00516"
                     /db_xref="CDD:214706"
     misc_feature    order(393..395,399..401,405..407,495..497,561..563,
                     567..569,615..617,627..629,639..641,651..653,660..662,
                     669..671,675..677,696..698,717..719,753..755)
                     /gene="sec14l7"
                     /note="phospholipid binding pocket [chemical binding];
                     other site"
                     /db_xref="CDD:238099"
     misc_feature    order(654..656,750..752)
                     /gene="sec14l7"
                     /note="salt bridge; other site"
                     /db_xref="CDD:238099"
     misc_feature    954..1247
                     /gene="sec14l7"
                     /note="Golgi-dynamics membrane-trafficking; Region:
                     GOLD_2; pfam13897"
                     /db_xref="CDD:433565"
ORIGIN      
tgtgtgtgtaggaggcgtggtgtttactcgtcgacctgcaggttccctccggcgctcacttcattcacagcctctgtcagagcgacacagcagcagcagacatgagcggacgagtgggagacctgagccccaaacaggctgagatattaactgagtttcgggggaggatccaggacatcctccccaacctgcctgcacagcacgaccactacctcctccgctggctccgagctcgtagcttcaatgttcagaaagctgaaactatgatcagaaagcatctggagttcaggaagaagatgaacattgactccatcatatctgactggaaacctccagaggtgattgacaagtacgtgtctggagggatgtgtggatacgacagggagggcagtcccatctggtatgatgtcatcggccctctggaccctaaaggtctgttgctatcggcaaccaaacaagacttcatgaagacgaagatcagacacactgagatgctgcagagggagtgtcagaggcagtcggagaagttggggcagaacgttgaagcgatcactctgatctatgactgtgaaggactcggactgaaacacatctggaaacctgccatagagacgtatggagagatcctcaccatgtttgaagacaactatccagagggcctgaagagggtgtttctgatcaaagctccgagaatgtttcccatggcctacaacctcatcaaacacttcctgtgtgaggagacacgacggaagatcatcgttttaggaagtaactggcaggaagtgttacgtaaacacatcgaccccgagcagcttcctgtggtgtacggaggaaccctgactgatcctgatggagaccctcgctgcagaaccatgataaagtacggcggcacagttcccaagtcgtactacgttcaggactcggtgaaggttcagtacgacagcagcgtgaccatcagccgaggctccgtcctccagctagaatatgatgtcacagcagccagcagcctcctgaggtggcagtttgccagcgacggagcggacatcgggttcggagtgtacagacggaccaaagagggcgtcggacagaaagtggctgagatgctgcaggttctgcccagcgaacgctacaatgcacacctggtccctgaagacagcggcctcacctgctctgagcctggagtctacgtgctgtgtttcgataacagctacagcatcctgcagtccaagagggtgagctacaaagtcgaggttcttcctccgccggacggacagatgcagagtccacgcagccgaggagacggcaggctgcagtgagcgggagcacagagttcactgagtatcaccagtcactgacagcaaaatcaatacacttacatcagggcaaaaaacaactgtggacttcctgtcaacacctctgtttgtcccactgtacgcatcatatatgtgttagtttataatcagtaattatccctcaataacttgtttatagagcagtcttttacaatgcagctgataaccacttgtgccctacctgcagacacaggctgatgaacgtagtgaagcatttagcatctaaatgtttccctcaaaagttcctgtattgttattgtaacaagatcgactacagctgctttaaatacaaattattagccgcagcaccggtgatagctgtggacgaagcattatgttttcaggttttccatctgtccatccatccttgtgatatctcaaggaacggctcaagggaatttcttcaaatttcccacaaatgtccacttggactcagcaatgaactgatacgtttttggtggtcataggtcaaagatcaaggtcactgtgaccttgtctgtttcatttctccaaaacacctcaaggaaatttcattgaaaatttgacacaaatgtccactttgactgaaaaataaactgatgagaattaggtggtcaaaggtaaaaggtcaaggtcactgtgaccttcctttctcattcttgtgcaaaaagtatctcattaacacctaatgggaattttttcaaatttggaacaaatgttcacttggactctatgaacaggttagagttgatggtcaaaggtcaaggttactgtgaccttgcatctgtctcattcttgtgaatgtgatatctcaagagcactataaggacatttctttacatttggcacaaacgtccactgtagaataatctggctagaagtttgtggtcaaaggtcaagatctgtgtgactttgcatctgtctcattcttgtgaatgcgctatcttaataacttgaggggatttcttcaaatttggcacaaatgttcactaggactcaaccataatctgattggatttcagtggtcaaaggtcagaggtcaaggtcactgtgaccttgcttctgtctcattcttgaaatgcgatatctcaaaaacaccttgagggaatttcttca
//

by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]