2024-03-29 16:57:24, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033354210 5163 bp mRNA linear INV 23-FEB-2022 DEFINITION PREDICTED: Belonocnema kinseyi protein argonaute-2 (LOC117168499), transcript variant X2, mRNA. ACCESSION XM_033354210 VERSION XM_033354210.1 DBLINK BioProject: PRJNA623416 KEYWORDS RefSeq. SOURCE Belonocnema kinseyi ORGANISM Belonocnema kinseyi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Cynipoidea; Cynipidae; Cynipinae; Cynipini; Belonocnema. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046658.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Belonocnema kinseyi Updated Annotation Release 100.20220217 Annotation Version :: 100.20220217 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5163 /organism="Belonocnema kinseyi" /mol_type="mRNA" /isolate="2016_QV_RU_SX_M_011" /host="Quercus virginiana" /db_xref="taxon:2817044" /chromosome="2" /sex="male" /tissue_type="whole body" /dev_stage="Sexual adult" /country="USA: Houston" /collection_date="2017" gene 1..5163 /gene="LOC117168499" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:117168499" CDS 39..2750 /gene="LOC117168499" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_033210101.1" /db_xref="GeneID:117168499" /translation="
MEHINGTCSKTETPPPGPTTSTAVGAAGTTGSSVVAPSSLGLVPAQQTHTPPQPPDLPMFACPRRPNIGREGRVIGLRANHFQITMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGTLKPVFDGRSNLYTRDPLPIGTDRLELEVILPGEGKDRVFRVVIKWVAQVSLFALEEALEGRTRQIPFDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRILPPPKLQYGGRVSSLSGQTKQQALPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRTVREDALRAFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQSLQLVCVVLPGKTPVYAEVKRVGDTLLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDAISEGQFLHVLQHELTAIREACIKLEADYKPGITFIAVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
misc_feature 420..644 /gene="LOC117168499" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 672..824 /gene="LOC117168499" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 825..1187 /gene="LOC117168499" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(981..983,1026..1028,1068..1070,1080..1082, 1134..1136,1155..1157,1161..1163) /gene="LOC117168499" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1323..2621 /gene="LOC117168499" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1752..1754,1764..1766,1800..1811,1818..1820, 1842..1844,1851..1853,1863..1865,1875..1877) /gene="LOC117168499" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1956..1958,1962..1964,2175..2177,2589..2591) /gene="LOC117168499" /note="active site" /db_xref="CDD:240015" ORIGIN
ctacaacatccttcgaatagaatcagaatcgtgttcccatggagcacatcaatggaacatgttcgaagacagaaactcccccaccggggcctacaacaagcactgctgtgggagcagctggaacaactggaagcagtgttgttgcccccagttccttgggcctggttcccgcccaacaaacacacacgcctcctcaacctccagatctgccgatgttcgcatgtccaagaaggccaaacattggtcgcgagggccgcgtcatcggcctgagggccaaccacttccaaattacaatgcctcgtggttacgtgcaccattatgatataaatatccaacctgacaaatgcccaagaaaagttaatcgagaaattattgagactatggttcacgcatatagtaaaattttcggaactctcaagcctgttttcgatggcagaagcaatttatacactcgggacccgttgccgatcggcacagatagattagagttagaggttatacttcccggagaaggcaaagacagagtctttcgagttgtaatcaagtgggtggctcaagtttctctcttcgccttggaagaggcactagagggacgaacccgacaaattcccttcgacgcaatcctcgcattggatgtggtaatgaggcacttaccgtccatgacctacacacccgttggaaggtcgttctttagtaccccagacggttattatcatccccttggtggcggaagggaggtttggttcggttttcaccagtctgtgcggccctcacaatggaaaatgatgttgaacatcgatgtctctgcgaccgccttctataaagcccaaccagtgattgaattcatgtgcgaagttctggacatccgagacatcaacgaacagagaaaacctctgaccgattcgcaacgagtcaagtttaccaaagaaatcaaggggctgaaaattgaaatcacacattgcggaactatgaggcgaaaatacagagtctgtaatgtcacgcgcaaacctgcccagatgcaatcctttccattgcaactagagaatggacagacggtcgaatgtacagttgccaagtacttcttagataaatataaaatgaagctgcgttatcctcatcttccgtgccttcaagttggtcaggagcacaaacacacgtacttacctctcgaggtctgcaacatcgtggcaggtcagaggtgcattaagaaactgacggacatgcaaacgtcgacgatgatcaaagctacggctcgttctgctcctgatcgtgaacgggaaatcaacaatcttgtcagacgtgctgactttaataacgattcttacgtacaagaatttggattgacaatctcgaacaacatgatggaagttagaggacgtatcctacctccgcccaaacttcagtatggaggccgcgttagttccctcagtggacagacgaagcaacaagcgttgcccaatcaaggtgtgtgggacatgcgaggaaaacagttcttcactggtgtcgagattcgagtatgggcgatcgcgtgtttcgccccgcagagaacagttcgagaagatgcgttgcgtgccttcacaacgcaactacaaaaaatcagcaacgacgctggaatgccgataatcggacaaccttgcttctgtaaatatgccactggtcctgatcaagttgaaccgatgttccgatatctgaaatcaactttccagtctttacaattagtctgcgtagtcctgcctggaaaaactcctgtctatgccgaggttaagagggtaggcgatactctcttgggaatggcgacacagtgcgtgcaggcgaagaacgtaaacaaaacatccccacagacattgtcaaatctttgccttaagattaacgtgaaactcggcggtatcaatagcattttggtgccaagcatcagacccaaggtcttcaatgaaccggtcatcttcctcggagctgatgttacacatccacctgcaggcgataacaaaaaaccgagcatagcagctgtagttggaagcatggacgctcatccttcgcggtacgcagccacggttcgagttcaacaacacagacaggaaatcatccaggaactcagttccatggttagagagctgctgattatgttttacaagagcaccggcggctacaaaccacataggataatcctttaccgcgatgctatttctgaaggtcagtttttgcacgttcttcaacatgagttgacggccattcgtgaggcctgcatcaaattagaagccgattacaagcctggaataaccttcattgccgtgcaaaagaggcatcatacccgtttgttctgcgctgacaagaaggaacagagcggaaagagtggaaatattccggctggaacgacagtcgacgtgtgtatcacacatccgaccgagttcgacttctatctgtgcagtcaccaaggaatccagggaacctcgagaccttcgcattatcacgtcctttgggatgataatcattttgaaagtgacgagctacagtgtctcacctaccaactctgccacacatatgtcagatgtacgagatctgttagtataccagctccagcttactatgctcatttggttgcattccgtgctagatatcacttagtcgaaaaagaacatgacagcggagaaggatctcatcaatcgggctgcagtgaagatcgaacgcctggtgcgatggcacgagcgataacagttcacgccgacaccaagcgagttatgtattttgcgtaatttatatgcgcgtgttgatgatctgcgaaatcgccatatccactgaaggaaaaaattcgggagtaactggcaatatccgtaccgcactttatacccaagttgaaatctatgtattgcattcaccccagaattatttctttcagtgtctctgaaagtaacaaagcggagtaatagagagagggagagagagagagagagagagtagcatgctacttaagtgtgacgtttgacgtgctcgggcggccaatttttttgatagatcatttccaagtataatgtcgcacgtctgccgaacatcggagtgccaaataatttcactgcttgacaaaagaaaagaaagaaaaaagattagaaatcaaggtttccgtcaggggtgttcagttggcggacgattttcgatctctgtttgcttctcgatacaaagagtagattttaatgaaaaaggtgcttttagttaatcacgttttagattaaattaaggtctttcgcagattcacacgaaaaaaagggggagaatgaagaaagggattttatatagatttggcctgtgtgcctgaattacgcttatttttttcgaggtagtcgtatgtacctcaatgaatctggcatttgtattataataataatggaaaaaattacgctacacgcaaccatttcgcacttgagactgccaatctattattgtttatggtgaaatatttactctaaaaaaattacgaggcttaatataaccttacattcgaatcgacttgtttagaataattaatgatgaagagagtagagaaaaaaattggccaccttgagtgttgcgtcagtagtcaagaaaaaaacgcttgaaaagaaaaaagaacccaacaaagacatggagctgattttccaagagttaaataagcgaatggccaaagtaagttagaattttattagagtgaaattgggaattgtggcgaatcagggcactttttgttttgcctttataataatgctttcaattgggaaattactttgccacgattactgattttcgcattgctatgtgttctgtatcaaatcttgtcattctaaaatctaaatttacaagtcttttgactaacgaccaagtgtcagtaacacaactcatccaaacttatccaatgcttgttatgaactcaacattattaacaaatattcagcaccaccgaaataatattagttagactagctagcagtttaatcgggtggatggaactcgacagttggcagaagtagttgtaggattccagtaaatattgagcagataaacaacccgttagattaatgaaaagagtactaaatattattattattattattatcattatcatcaggagaatatccatacatttgataaatccttacgttccacacgcggcagaaaatatttccggaatccttttttggaacaataataatcatcatctaggcgtcatgataaataagtgaagaataacttttaagtgcatttcagagtcctctagatttatgtagagtagatagtaattcatattaggtagattaactatttataaccgagtattggctgtcgcacattcagagtttcatgcttaacgagaaaccctcgactggcgacttatttttcataaattttctgatggggaatggacgaaactcaaattgtcgagggtttcacgtcgtagatttacgaacataaagcaagcctcccagcgggttctgataaaaatttcaatttaatcaatcaataatagcttttcttattgtgaatggttaaactgcgatacgccgcatggtgacgaaaatccgaactagaaagaatgggtgcgattttaaagatgcattttaatttatgcataaaagaattttagcgattgttttaaattatttattgggtactaaaaataggcatttatcgtaaacaacggggtttagttataatttacatcttatatagtaaaaaagaaaaacaccttttttgacaaatatttttctgaaaaaaaaaaagcaattattgtgctatttattttgattttcaacagattataatatttaggagagaactcgtatttttaattctaatcgtctgttatttgcataatacgaacaaacttacatgaaatagtgaaataattgttttgtttttttcaaagcctatttgacacgaatgagttttttcactgtataagatagaaattctatgtaaacctatttgttcatttatgaagatttgtttttagcattcaataattgttttaaactttccgaaacaatcgtaaaaacacttttagggaaaaattaaaatacatatttaaaattgtacctactctttctagttccagttttcggcaacaggtggtgaaattgtagaccaccatccccaatacaaatgactaattcctaataaaagttcatatttaatttc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]