2024-04-18 16:26:07, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033027547 4160 bp mRNA linear VRT 02-APR-2021 DEFINITION PREDICTED: Amblyraja radiata NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_033027547 VERSION XM_033027547.1 DBLINK BioProject: PRJNA610638 KEYWORDS RefSeq. SOURCE Amblyraja radiata (thorny skate) ORGANISM Amblyraja radiata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045964.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Amblyraja radiata Updated Annotation Release 100.20210331 Annotation Version :: 100.20210331 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4160 /organism="Amblyraja radiata" /mol_type="mRNA" /isolate="CabotCenter1" /db_xref="taxon:386614" /chromosome="9" /sex="male" /tissue_type="testis, liver" /country="USA: Gulf of Main" /lat_lon="43.1336 N 68.3266 W" /collection_date="2017-09-18" /collected_by="Jeff Kneebone" gene 1..4160 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:116977182" CDS 50..3502 /gene="nrde2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_032883438.1" /db_xref="GeneID:116977182" /translation="
MEPPSASLFPAFTGTAATSAGSAAGLDWLSNRSFRTEDALQLHQRMVGIAADSPQGSPQASTYSDRDASGTLSPRLVVSGEEHPAAKKKKKKKKHHRHKKEKKKSRERDHSIGNSDPELLWEKGKQPSTVRNDVCADLPAGEFMWLDDIQSPSGQSFCIDRKADPANWMYKSLYRGDLARYKRKGDVCIGLNPKKQQILWEGPKQQKKKRAKRREDRYYSTSSLQQLRTDAVAVRCEVASQSNTPAVAPAFIPVPDWEESESRSAGTVSWVNPLGIYDASTSLWLQGKGRPEQEDKGRVPTDSGEEVNAAMLAKVERFNRLLREDSSNVQTWMEFVHFQDELMQGPNPFTAATGESEKRKRSRRMVLEKKLAILERGIESNPSRVELKVARLQLCQEAWEPSSLVNEWKKVVFLHPNDTALWQRYLLFYQSQFSTYSTSKVNGTYGKCLSTLAAALDGTLVSHPALPGIEEAMLAIFLQQCHFLRQAGHSEKAIALFQALIDFTFFKPDSMARLTTKAQVEFFEPFWDSGEPRFGEAGARGWKAWMRQQEKGGWIILNEEGEDEEEDEDGEEIKDKSRPKWQLWVQVEGARDAKYWLPWRAKKVKGQAEEDCEDPDRQVLFDDIGDSMFRICSPGLKFQLLSCFLRFLGVPAGSELPPSCLNLALDEPALLASGSEGAMLADGSGPSTGGVAAVGLLDAGPRPGTGHCRAGEEFIRFVFQQALPHLSGEEQSELALSWLLYEKSKVVQNLRLGSKRVKPQGKRSKRLAKRLLKEPANRNSLALWREFAHLEWLLGNVDESRRVFHTAVSSDAAQGLSSSSLCRLCLLYASLELELEVAGQAACPRALHVLTRLAQGDGRPFAGEVPAVDVLKARRSYEQAVRCLPADPAHLASLAGCYALFLYLTVGLQAADTLYRQAADWLDVLPPPAESAPAASSRVSASRRLATMHVALLWFHARAGPRPRRPLVEALQAALRRFPGSPRLWRLFVRLASTAPHSGSTARRFFHSLTRANRGDILPWLFAIHAEEQRKQRIDSVLRAGAGMEHSMVPETGLDNRIAALFEHAVGSEAGAHCVLLWRMFLRFTAARGDVGRTRGVFYRALQHCPWAKVLYLDAVRLLPERLQEITDLMTEKEIRLRLPLEELDILVED"
misc_feature 515..817 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(515..541,548..553,563..568,572..574,578..622, 629..637,641..649,668..676,686..688,695..697,701..706, 713..733,758..769,788..817) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1001..1996 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
gcggcccggcgacagtgacggcatcggaaagcgacgcggcctagggaggatggagccgccgtcggcctcgctctttcctgccttcaccggcaccgcagcgaccagcgccggctccgccgcaggattggattggctcagtaatcggagcttccgcactgaggatgccctgcagctgcaccaacgcatggtggggattgcagcagactcgccccaggggtcaccgcaggcaagcacttattccgaccgtgacgcgtctgggacactgtcccccagattggttgtcagcggggaagagcaccctgcggccaaaaagaagaaaaagaagaaaaaacatcatcgtcacaaaaaagagaagaagaaaagccgagagagagatcattccatcggtaactctgaccctgagctcctctgggagaaaggcaagcagcccagcactgtgaggaatgatgtctgtgccgatcttcctgcgggtgaattcatgtggctggatgacattcaatcgccttctggccagagcttctgcatcgacaggaaggctgatcctgccaactggatgtacaaatcgctctatcgtggcgacctggcaaggtacaagaggaaaggggatgtatgcattggccttaaccccaaaaagcagcagatcctttgggaaggtcccaagcaacagaagaagaagagggcgaagaggagggaggatcgatactacagcacatcgagccttcagcagctgaggactgacgcggttgccgtccgttgtgaagttgcttcgcagagcaacacccccgccgtcgcgccggccttcatccccgtgccggactgggaagagagcgagagtcgatcggcgggcaccgtcagttgggtcaatccgctggggatctacgacgcttccaccagcctgtggctgcaggggaagggacggcccgagcaggaagacaaaggccgcgtccccacggactccggtgaggaagtgaatgccgctatgctggccaaggtggagaggttcaacaggttgctgagggaggactcgagcaacgtccaaacctggatggagttcgttcattttcaggatgagttaatgcaaggtccaaatccgttcacggcggccacgggggaatctgagaagaggaagaggtcacggcggatggtcctggagaagaagctggctattttggagcggggcatcgagagcaaccccagccgggtggagctgaaggtggcccgtctgcagctgtgccaggaggcctgggagccgtccagcctggtcaacgagtggaagaaagtggtcttccttcaccccaacgacaccgccctgtggcagcgctacctcctgttctaccagagccagttcagcacctactcgacgtccaaggtcaatggcacctacggcaaatgtctcagcaccctggcggctgccctggacgggacgctcgtgtcccatcccgcccttcccggcatcgaagaagccatgctggcaattttcctgcagcagtgtcatttcttgcggcaggccggccattcggaaaaggccattgccctcttccaggctctgattgacttcaccttcttcaagcctgacagcatggccaggctgacaaccaaagcacaggtggagttcttcgagccgttctgggatagcggtgagccccggtttggagaagcgggagcgagaggttggaaggcctggatgcgacagcaggagaaaggtggatggattatcctgaacgaggaaggagaggatgaggaagaggatgaagatggggaggagatcaaggacaagagccgacccaagtggcagctctgggtgcaggtagaaggtgcccgcgacgccaagtactggttgccatggcgagccaagaaggtgaagggtcaagctgaggaggattgcgaggatcctgacaggcaggtgctgtttgatgacattggcgactcgatgttcaggatctgcagccccgggctgaagttccaactcctgtcctgcttcctgcgtttcctgggggtccccgccggctcggagctgcccccctcctgcctgaacctggcgctggacgagccggccctgctggccagcggatcggagggcgccatgctggcggacggctccggcccttcgaccggcggggtggcggctgtcggcctcctggacgcggggccccgaccggggaccgggcactgcagggccggggaggagttcatccgcttcgttttccaacaagccctgcctcatctctccggggaagagcagtcggagctggctctgagctggctgctctacgagaaatccaaggtggtgcagaacctgcgtctgggaagcaagagggtgaagccgcagggcaagaggagcaagcggctggccaagaggctgctgaaggagccagccaaccgcaacagcctggccttgtggagggagtttgcccacctggagtggctgctgggcaacgtggacgagtcgcggcgggtcttccacacggccgtgtcctccgatgccgcgcagggactgtccagctcctcgctctgccggctctgcctcctctacgcctcgctggagctggagctggaggtggcggggcaggcggcttgccctcgcgccctgcacgtgctgaccaggctggcccagggggacgggcggccgttcgctggtgaggtgccggcggtggacgtgctgaaggcgcggcggagctacgagcaggcggtacggtgtctccccgccgaccccgctcacctggccagcctggccggctgctacgccctcttcctctacctcacggtgggcctgcaggccgccgacactctctaccggcaggcggccgactggctggacgtgctgccccccccggcggagtcggcgccggccgcatcctcgcgcgtctccgcctcgcgccgcctggccaccatgcatgtggcgctgctgtggttccacgcccgggcgggcccccgccccaggcggcccctggtcgaggcactgcaggctgccctgcgccgcttccccggcagcccgcgcctctggcggctcttcgtgcggctggccagcaccgcgccgcacagcggcagcaccgcacgccgcttcttccacagcctcacccgcgcaaacagaggcgacatcttgccatggctgttcgccatccacgcagaggagcagaggaagcagcgcatcgactcagtactgagggcgggtgctgggatggagcacagcatggtgccggagacgggcctggacaatcgtatcgcagcgctgtttgagcatgccgtggggtcggaggcgggagcgcactgcgtcctgctctggaggatgttcctgcggtttacggcggcgcgaggggatgtggggcggacgagaggtgtgttctacagagcgctgcagcactgtccctgggccaaggtgctgtacttggacgcagtccgtctgctacccgagcggctgcaagaaatcactgacttgatgaccgagaaggaaatccgcctccggcttcccctcgaagagctggacatcctggtggaagattaacgaggaacccatcctggtcgaagatgaacgaggaaccgatcctcatcgaagattaacgaagaaccgatcctcatcgaagatgaacgaggaaccgatcctcatcgaagattaacgaagaactgatcctcatcgaagatgaacgaggaaccgatcctcattgaagattaacgaagaaccgatcctcatcgaagattaacgaagaaccgatcctcatcgaagattaacgaggaacccatcctggtcgaagattaacgaggaactgatccaggtcgaagattaatgaaggatcgatcctcatcgaagattaacgaagaaccaatcctggtcgaagattaacgaagaaccaatcctggtcgaagattaacgaagaaccgatcctggtcgaagattaacgagggactgatcttggacgaagattaacgaagaaccgatccagatggacgattaaagaggaacggccaccttcctccatctcacaggccatccggagtcacgggtgggggacacggattccctgtcctcagcccaaggcaacagcgggttcacacacggacacattcctcccctcagccccttctcccaccctttctccctctctccccctctctccctccctcaccctccccctctctccctccctcactctccctcctccccc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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