2024-03-28 19:11:03, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_033019880 3486 bp mRNA linear VRT 02-APR-2021 DEFINITION PREDICTED: Amblyraja radiata argonaute RISC catalytic component 2 (ago2), mRNA. ACCESSION XM_033019880 VERSION XM_033019880.1 DBLINK BioProject: PRJNA610638 KEYWORDS RefSeq. SOURCE Amblyraja radiata (thorny skate) ORGANISM Amblyraja radiata Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Batoidea; Rajiformes; Rajidae; Amblyraja. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045959.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Updated annotation Annotation Name :: Amblyraja radiata Updated Annotation Release 100.20210331 Annotation Version :: 100.20210331 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.6 Annotation Method :: Best-placed RefSeq; propagated RefSeq model Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3486 /organism="Amblyraja radiata" /mol_type="mRNA" /isolate="CabotCenter1" /db_xref="taxon:386614" /chromosome="4" /sex="male" /tissue_type="testis, liver" /country="USA: Gulf of Main" /lat_lon="43.1336 N 68.3266 W" /collection_date="2017-09-18" /collected_by="Jeff Kneebone" gene 1..3486 /gene="ago2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns" /db_xref="GeneID:116972344" CDS 273..2849 /gene="ago2" /codon_start=1 /product="protein argonaute-2" /protein_id="XP_032875771.1" /db_xref="GeneID:116972344" /translation="
MFSTAEPDPSSPTPPVQTLSTFKPPIRPDFGTMGRPIKLQANFFEVDIPKIEIYHYDIDIKPDKCPRRVNREIVEHMVQHFKNQIFGDRKPVFDGRKNLYTAMPLPIGRDRVELEVTLPGEGKDRIFKVVIKWVACVSLQALHDALSGRLPSIPFESIQALDVVMRHLPSMRYTPVGRSFFTPSEGCSNPLGGGREVWFGFHQSVRPSLWKMMLNIDVSATAFYKAQPVIEFMCEVLDFKNIEEQQKPLTDSQRVKFTKEIKGLKVEITHCGQMKRKYRVCNVTRRPASHQTFPLQQENGQTVECTVAQYFKDKHKLNLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSAPDRQDEISKLMKSASFNADPYVREFGIGVRDDMTDVPGRVLQAPSLLYGGRNKTIATPIQGVWDMRGKQFHTGIEVKVWAIACFAPQRQCREDTLKAFTDQLRKISRDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLVVVVLPGKTPVYAEVKRVGDTLLGMATQCVQVKNVLKTSPQTLSNLCLKINVKLGGVNNILVPQGRPAVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQQHRQEIIQDLAIMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVDTKITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNRFNADELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHTSGQSNGRDQLALAKAVQVHQDTLRTMYFA"
misc_feature 375..767 /gene="ago2" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 795..947 /gene="ago2" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 948..1310 /gene="ago2" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1104..1106,1149..1151,1191..1193,1203..1205, 1257..1259,1278..1280,1284..1286) /gene="ago2" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1443..2720 /gene="ago2" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1854..1856,1866..1868,1902..1913,1920..1922, 1944..1946,1953..1955,1965..1967,1977..1979) /gene="ago2" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2058..2060,2064..2066,2274..2276,2688..2690) /gene="ago2" /note="active site" /db_xref="CDD:240015" ORIGIN
aggcctgtctccccgcctgtgtgtgtcgggcaggcgagcggccagtttcgggctgtctgcctctgtctccccccccgtccgcctgtccccttctcttcccctctacctccggacgcctattcatgttgggggttttccctgcttctttttcttctcctcctcctcctctcccttccgtagtcttctcatgcgtctcatgttttcgctcccgtcagtaatataatttcacaccctagctcctcggacggttccccagccgcctccaaccgatcatgttttcaacagcggagcccgatccatcgtccccaacaccaccagtgcagacactctcaactttcaaacctcctattagacccgattttggcacaatgggtcgaccaatcaagcttcaggccaatttctttgaagtggacattccaaaaattgaaatctatcattatgatattgatataaagccggacaaatgcccaagaagagtaaacagagaaattgttgaacacatggttcaacattttaaaaatcagatatttggcgacagaaaaccagtgtttgatggaagaaagaacctctacactgctatgcctcttcctatagggcgagacagggtggagcttgaggtgactttaccaggcgaaggaaaggatagaatttttaaggtggtgataaaatgggtggcatgtgtcagcctccaagccttgcatgatgcactttcaggtcgactcccatcaattccttttgaatctattcaagcactggatgttgtgatgagacatctaccatccatgaggtacactccagtaggccgttcattcttcacaccttcagagggatgttccaacccattgggagggggcagggaagtctggtttggatttcatcagtcagtcagaccttcattatggaaaatgatgcttaatattgatgtatctgctacagcattttacaaggctcagccggtgattgaattcatgtgtgaagttttggattttaaaaatattgaagaacagcagaagccattaactgactctcagagagtaaaattcacaaaggagataaaaggacttaaggtggagataactcattgtggacaaatgaagagaaaatacagagtatgcaatgttactagaagaccagcaagccatcaaacattcccacttcagcaagagaatgggcagactgttgaatgcacagtagcacaatatttcaaggataagcacaaactaaatcttcgctatcctcatttaccatgtctacaagtcggacaggagcaaaagcacacctatcttcctcttgaggtgtgtaatattgtagctggacagagatgtataaagaagctgacagacaatcaaacctcaactatgattagagccactgccagatctgcaccagacagacaggatgagatcagcaaactgatgaaaagtgctagttttaatgctgacccctatgttcgggaatttggaataggtgtgagagatgacatgacagatgttccaggtcgagttcttcaggcaccttccttgctgtatggtggtcggaacaagacaattgctactcccattcaaggtgtatgggatatgcgaggtaaacagtttcatacaggcattgaagtcaaagtgtgggccattgcctgtttcgctccacagaggcagtgcagagaagatacactcaaagcattcacagatcaattaagaaagatatccagggacgctggcatgccaatacaaggtcaaccttgtttctgtaaatatgcacaaggggctgatagtgtcgagccaatgttcaggcatctgaagaacacctatgcagggcttcaactggtggtggtggtgcttcccgggaaaactccagtttatgcggaggttaaacgtgtgggggatacgttactcggcatggcaactcagtgtgtgcaggtgaaaaatgtgctgaaaacctccccacaaacactttccaacctttgcctgaagatcaacgtaaagttgggaggtgtcaataacatattggtgccacaaggaaggccggctgtgtttcagcaaccagtaatatttttgggtgccgatgtaacgcatccaccagctggtgatgggaagaagccctctattgctgcggtggtggggagcatggatgctcatccaagtcgctattgtgccacagtacgggttcagcaacatagacaggagattatccaggaccttgctatcatggtcagagaactactcattcagttttacaaatctacccgtttcaagcccacacgtattatattttatcgtgatggtgtttcagaaggacaatttcaacaggtgttgcatcatgagttgctggccattcgtgaggcatgtataaagctggaaaaggactaccagcctggcattaccttcattgtggttcagaaacggcatcacaccagactgttttgtactgacaagaatgaaagggtcggtaaaagtggcaatatcccagcaggcacaacagtggacacaaaaataacacatccttcagaatttgacttttacttgtgcagccatgctggtattcagggaacaagccgaccatctcactaccatgtactatgggatgataatcgtttcaatgcagatgaacttcaaattctcacatatcaactttgccatacgtatgttcgatgtacgcggtcagtttccatcccagcgccagcctattacgctcatttggtggctttccgtgccagatatcatttggtggacaaggaacatgacagtgctgaaggaagtcacacatcaggccagagcaatggcagagatcagctggctctagcgaaagctgtacaggttcaccaggacacactacgcactatgtattttgcttgacaagtgtattcggttggtgtttctgaacagagctgggctaagacaagaccggctgtattttaccaggcaatgtagtgaagaatgagttgctagttgtattgctgtgtacactgccgtaccttgcaagtctccctcaattatggggttcagtgttacacagtaatgttttaatcaagccaaatgtaatgttttccttgaaaagcaaaagcattaatatttggaggtctgtggtagttgtatcagtacatatctccaccactgcaagttgaataaatgcagcctaattctgcattagatttaaacttggtagaaagcttttcaaagaagagatatgtggatgcattaaagtatgcattagcaactgcatatttgattaaggtttgtttaggatggcaaagtaatgtaagaatttagaggatggtgtgactctaaagacaaagtatcccatttgttggcttcaaatggcagaattttgagtttcaaaattgaacattaatggcattccttttattagatctggagttttatccagtcaattcaattaagactactgtaatacagtactgtgaaatatggcaatcttaagtcagaatgggggcaaaggtcttttaacataaaataaatttatgaacagcaa
//
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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