2024-04-20 15:54:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032741195 4348 bp mRNA linear INV 30-AUG-2021 DEFINITION PREDICTED: Drosophila grimshawi protein argonaute-2 (LOC6569124), transcript variant X2, mRNA. ACCESSION XM_032741195 VERSION XM_032741195.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila grimshawi ORGANISM Drosophila grimshawi Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Hawaiian Drosophila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025062889.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Aug 30, 2021 this sequence version replaced XM_032741195.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila grimshawi Annotation Release 103 Annotation Version :: 103 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4348 /organism="Drosophila grimshawi" /mol_type="mRNA" /isolate="15287-2541.00" /db_xref="taxon:7222" /chromosome="Unknown" /sex="female" /tissue_type="whole fly" /dev_stage="Adult fly" gene 1..4348 /gene="LOC6569124" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 11 long SRA reads, 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns" /db_xref="GeneID:6569124" CDS 250..3114 /gene="LOC6569124" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_032597086.1" /db_xref="GeneID:6569124" /translation="
MYPVGQQSQWTTPSPTRPQSPSQAQTSFDTLTSPPTPGSSVNPTAVTSPSAQNVAAGGATVGGAAAAAAAQAASALGSTGSVTAAIAAAAAASPTTQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGYVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVKRADFNNDSYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRVSSGITGQQLFPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTQQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKKEQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 595..984 /gene="LOC6569124" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1012..1164 /gene="LOC6569124" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1165..1527 /gene="LOC6569124" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1321..1323,1366..1368,1408..1410,1420..1422, 1474..1476,1495..1497,1501..1503) /gene="LOC6569124" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1663..2985 /gene="LOC6569124" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2116..2118,2128..2130,2164..2175,2182..2184, 2206..2208,2215..2217,2227..2229,2239..2241) /gene="LOC6569124" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2320..2322,2326..2328,2539..2541,2953..2955) /gene="LOC6569124" /note="active site" /db_xref="CDD:240015" ORIGIN
aaatcaaccaaacgaataaaactactttaaagtgtgataagcaaaaggctgaaatcaaaaaacaaaaaaaaactaagtataataattagtaggaacgaaaagcaaaaacaaagaataaatccaaccaactacaagaacaatcaattacatttaaaacaacaacaaaaatacacccatacacacaaaaagaaaacatagagaaacctttgtatacattcttacatttcttaaaacaaatactagtgcaaaatgtatccagttggacaacagtcacagtggacaaccccctcgcccacgaggcctcagagcccctctcaggcgcagactagcttcgacacgctcacatcaccaccaacacccggttcatcggtaaatcccaccgccgtgaccagtccaagtgctcagaatgttgctgcgggcggtgctactgtgggtggtgcagcagccgctgcagcggctcaggctgcctccgccttgggctcgacgggcagtgtgacggcagcgattgcagcagctgctgcagcatcgccaaccactcaaccggatatgcccgtgtttacgtgcccccgtcgaccgaatctgggccgggagggcagaccgattgtgctgcgtgcgaatcactttcaggtgacaatgccacggggctatgtgcatcactatgacatcaatatacagccggataagtgtccgcgcaaggtgaatcgcgagatcattgagaccatggtgcatgcctatagcaagatctttggagtgctcaagcccgtctttgatgggcgaaataatttgtatacccgggatccgttgcccattggcaatgagcggctggagctggaggtaacgctgcccggcgagggcaaggatcgcatctttcgggtgacgatcaagtggcaggctcaagtctccctcttcaatctggaggaggcgctcgagggacgcacccgtcaaataccctacgatgccatcttggccctcgatgttgtcatgcgccatttgcccagcatgacgtatacgccggtgggacgcagtttctttagctcacccgatggctactatcatccccttggcggtggtcgtgaggtctggttcggtttccatcagagcgtgagaccctcgcaatggaaaatgatgctcaacattgatgtttcggccactgccttctacaaggctcagcccgtcattgattttatgtgcgaggtgctggacattcgcgacatcaacgagcagcgcaagccgctcaccgattcgcagcgcgtcaagttcaccaaggagattaagggactcaagatcgagattacacactgtggccagatgcgtcgcaagtatcgtgtctgcaatgtgaccaggcgaccagctcaaatgcaatccttcccgctgcagctggagaacggtcagaccgtggagtgcaccgtggccaagtactttttggataagtatcgcatgaagttgcgctatccgcatctgccctgcctgcaggtgggtcaggagcacaagcacacctatctgccgctcgaggtgtgcaacattgttgccggccagcgttgcattaaaaagctgaccgatatgcaaacctcaacgatgattaaggccacggcacgctctgctccggatcgtgagcgcgagattaataatctggtgaaacgggctgatttcaataatgattcatatgtgcaagaattcggcctgaccatttccaactcgatgatggaggtgcgtggacgagttctgccgccacccaagcttcaatatgggggacgtgtctcgtcgggcatcacgggacaacagctctttccgccacagaacaaagtgtcgctggcatcgccaaatcagggcgtttgggatatgcgcggcaagcaattcttcaccggtgtcgagatacgcatctgggcaattgcctgctttgcgccgcagcgcacggtgcgcgaggatgcattgcgtaatttcacccagcagctgcaaaagatctccaacgatgccggcatgccaatcattggtcagccgtgcttctgcaaatatgccacaggaccggatcaggtggagccaatgtttcgttatctgaaaatcaccttccccggcctacaactcgtggtcgttgtgctgcctggcaagacgcccgtctatgcggaggtgaagcgtgttggtgacacggtgctgggcatggccacccaatgtgtccaggcgaagaatgtgaacaagacatcgccacagaccctgtccaatctctgtctgaagatcaatgtgaaactgggcggcattaattccatactggtgccatcgatacgacccaaggtcttcaatgagcccgtcatcttcctcggtgcggatgtcacccatccgccagctggtgataataagaagccatcgattgctgctgttgttggttcgatggatgcgcatccatcgcgttatgcggccacggtgcgagtgcaacagcatcgccaggagatcattcaggagctgagcagcatggtgcgtgaattgctcatcatgttctacaaatccaccggtggctataagccacatcgcatcattctctatcgtgatggtgtctctgagggtcaatttccgcatgtgttgcaacatgaactgaccgccatacgcgaggcatgcatcaaattggagccagaatatcggccgggcattaccttcattgtggtgcagaagcgtcatcatacgcgtctcttctgcgcagagaagaaggagcagagcggcaaatcgggcaatattccagctggcaccacagtcgatgtgggcatcacacatcccacggaattcgatttctatttgtgcagccatcagggcatccagggcaccagtcgcccctcgcactaccatgtgctctgggatgacaatcatttcgattccgatgagctgcagtgcctcacgtatcaactgtgccacacttatgtccgttgcacgcgctccgtcagcatcccggcgccggcatattatgcccatttggttgccttccgcgccagataccatctggttgagaaggagcatgattccggcgagggttcacatcagagcggctcctccgaggatcgcacgcccggagcaatggcccgagccataacggttcatgccgacaccaaaaaggtcatgtactttgcctaaaaagtatccaaaagccacaccaaaaacacacaaacaaacaaacaaacagcaaacagcagcagtaacaaacagcaaacaaacaacaaaaaaagaacacttaattttcggagaaatgtattcgaataagcgagtcgccaactcgaaagaaatcgaaaaggataaattggaatatattatacgaagaagaagaagaagacaaagaggaagaaaaaggccaagtcgggaattattagtgattaagttgaaaatgatgatgatgatgatgattatttttaagtttaaaagttaggtcaagtcgcgagttaaaaaaggcaacgccagaacagctcttatggaacagatttatgcattagcttttaaggccaatggataaaacacacacaaacacacacaaaacaagcacacacacaacacaccccaacacacccacacacgccaaattttagaaaattagaaacaaagggaatcgaatgttaaaagcacaagcaggcgcaacaaatgtgaagaaggagaattctcaaacaacaaaatataaataaaaaatcaacaacaagcgtagcgaaacaaaaaactaaagggaacaaaacgaaagtcaagaaaatcaacaacaacaaccgcaagaaagcaaaaaaaaaaaagaaaagcaaacaaacatttacgatgaactttttgtaatagaataaattatatttttacacaacaaaaagaagaaaaaaagtgaagacaagaaatgcaaacaaccaaaggtttttagtatatcaaaacaagaacatttttgctgattaactcaaatacacaacacacacaaaacatacacacacaacaaatacaacaaccaaacaacaactcggaattctctgtactgtgaacgaagaccaccaccaagcttataaaacaagtttaaaaatgacaaaaacaacaacaacaagaaaaaccacaacaatacgacaagcattaaagagtgtaataataattagccatctactaaaaaaacaaaaatacttcaatactacaactcaaaaaaatgtccagaattgtaaaaagctaactttttagtagtcttaagtttggtaaataccaaaaaaaaaaaaaaacaacaaaaaaaaagcaaaaaaagagtaaaacaaaaaacaaaaatgaaaactccaatttcaacaagggacaaacttttggtcaaacaattgctagttatatttatatatacttatatacatgtatgtgtatataatattta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]