2024-04-25 18:32:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032730668 5407 bp mRNA linear INV 30-SEP-2021 DEFINITION PREDICTED: Drosophila mojavensis protein argonaute-2 (LOC6580895), transcript variant X4, mRNA. ACCESSION XM_032730668 VERSION XM_032730668.2 DBLINK BioProject: PRJNA728747 KEYWORDS RefSeq. SOURCE Drosophila mojavensis ORGANISM Drosophila mojavensis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_025318907.1) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 30, 2021 this sequence version replaced XM_032730668.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Drosophila mojavensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5407 /organism="Drosophila mojavensis" /mol_type="mRNA" /isolate="15081-1352.22" /db_xref="taxon:7230" /chromosome="Unknown" /sex="female" /tissue_type="whole fly" /dev_stage="Adult fly" gene 1..5407 /gene="LOC6580895" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 69 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns" /db_xref="GeneID:6580895" CDS 964..3744 /gene="LOC6580895" /codon_start=1 /product="protein argonaute-2 isoform X4" /protein_id="XP_032586559.1" /db_xref="GeneID:6580895" /translation="
MYPVGQPPPAPGSSVNPTAVTSPSAQNVAAGGATVGGAAAAAAAQVASALGTTGVSAAIAAAAVSPTTQPDMPVFTCPRRPNLGREGRPIVLRANHFQVTMPRGFVHHYDINIQPDKCPRKVNREIIETMVQAYSKIFGVLKPVFDGRNNLYTRDPLPIGNERLELEVTLPGEGKDRIFRVTIKWQAQVSLFNLEEALEGRTRQIPYDAILALDVVMRHLPSMAYTPVGRSFFSSPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIDFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGQMRRKYRVCNVTRRPAQMQSFPLQLENGQTVECTVAKYFLDKYRMKLRYPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINTLVKRADFNNDPYVQEFGLTISNSMMEVRGRVLPPPKLQYGGRMSSGITGQQLLPPQNKVSLASPNQGVWDMRGKQFFTGVEIRIWAIACFAPQRTVREDALRNFTLQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKITFPGLQLVVVVLPGKTPVYAEVKRVGDTVLGMATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFPHVLQHELTAIREACIKLEPEYRPGITFIVVQKRHHTRLFCAEKREQSGKSGNIPAGTTVDVGITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFDSDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGSSEDRTPGAMARAITVHADTKKVMYFA"
misc_feature 1225..1614 /gene="LOC6580895" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1642..1794 /gene="LOC6580895" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1795..2157 /gene="LOC6580895" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1951..1953,1996..1998,2038..2040,2050..2052, 2104..2106,2125..2127,2131..2133) /gene="LOC6580895" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2290..3615 /gene="LOC6580895" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2746..2748,2758..2760,2794..2805,2812..2814, 2836..2838,2845..2847,2857..2859,2869..2871) /gene="LOC6580895" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2950..2952,2956..2958,3169..3171,3583..3585) /gene="LOC6580895" /note="active site" /db_xref="CDD:240015" polyA_site 5407 /gene="LOC6580895" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gtgtggttagcgtgcacagtatgcgtctcactcacacacgtcgcgagttaaaaattttgtgtttgctgcgggacgtccaagtgtgaaaaactgatgaaaattgcatattttgcataatgcgcgacgtgaaaagctaacaaaaattgttaaaaattccaatacaatagtctggctagcgtttgtgcatagtttctggcagcgcatacgtgttcgggtgcacaaaaacgacgtctcgaaaaaataaaacaaatctatatatatacgtgtgcacacacattttctgctgcccaatctaaaacgcatacaaaagcattttcttgctgtagaagcacctccgtcgtcgtcgtttgtccagcggagcacccagcacacacatacacacatataaaacacccacacgcgcactcatacagccaaatcgagataaagaagcataaagaataattgttcttagttgtaaaaaccaaaatataagagcattagaaatacatatgtacatacatatgaatatgtatttgtatgtatacatatacatacagacatatacataaaacgaaagctgtgcctacatttgtgttcttttccaatacttacaataaacaacaataagaataatatttaaagtataaatattaatagtaataataattaactgaaagaggactcgacaacaacaacatagcgtgtgtcctgtgtggaaattgtaatttttacaacaacaaatttaaatgcgaaaatcaaccaaacgaataaaactactttaaagtgtgataagcaaaaggctgaaataaaaaagaaacaaaaaaataataatatttagtaggaacgaaaagcaacaaaagaaaacccaactataagaacaatcaattacatttaaaacacatacacgaaaaagcaaaaaaataaataaacagaaaacctttgtatacattcttacatttcttaaacaaatactagtgcaaaatgtatccagttggacaaccaccgccagcgcccggttcttcggtaaatcccaccgctgtgaccagtccgagtgctcagaatgttgctgcagggggtgccacggttggtggtgccgcggctgcggctgctgctcaagtggcgtctgcattgggcaccacgggcgtttcggcggcgattgctgcggcagcggtgtcgcccacaacgcagccagatatgcccgtcttcacgtgcccgcgacgaccaaatctgggaagggagggcaggccgatagtgctgcgtgcgaatcactttcaggtgacaatgccacgcggcttcgtgcatcactatgacatcaatatacagccggacaagtgcccgcgcaaggtgaatcgcgagatcatcgagactatggtgcaggcctacagcaagatctttggggtgctgaagccagtctttgatggacgtaacaatttgtatacacgggatcctctgcccattggcaatgaacgactggagctggaggtaacgctgcccggcgagggcaaggaccgcatctttcgtgtgacgattaagtggcaggcgcaagtgtcgctcttcaatctggaggaggctctggaggggcgcacgcgccaaataccttatgatgctatcttagcgcttgatgtggtcatgcggcatttgcctagcatggcgtatacgccagttggacgcagtttctttagttcaccggacggctactatcatcctttgggtggtggccgcgaagtctggtttggtttccatcagagcgtgcggccatctcagtggaaaatgatgctcaacattgatgtttcggctactgctttctacaaggctcaacctgtcatcgattttatgtgcgaggttttggacattcgcgacattaacgaacagcgcaaaccgctcaccgattcgcagcgcgttaagttcaccaaggaaatcaaaggactcaagattgaaatcacgcactgtggtcaaatgcgtcggaaatatcgcgtctgcaatgtgacccgtcgaccagctcaaatgcaatccttcccactgcaactggagaatggacaaaccgtcgagtgcactgtggccaagtactttttggataagtatcgcatgaagctgcgctacccgcatttgccctgcctgcaggtgggtcaggagcacaagcacacctatctaccacttgaggtgtgcaacattgtggctggacaacgttgcatcaaaaagctgaccgacatgcagacgtcgaccatgatcaaagcgactgcacgctcggcgcctgatcgtgagcgtgagattaacacgctggtgaagcgtgcggacttcaacaatgatccctatgtgcaggagtttgggctaaccatctccaattccatgatggaggtgcgtggccgggttttgccaccaccaaagcttcaatatgggggacgtatgtcgtcggggatcaccggacaacagctattgccgccacagaataaggtgagcctggcatctccgaatcaaggcgtttgggacatgcgtggcaagcagttcttcacgggtgtcgagatcagaatttgggcgattgcctgcttcgcaccacagcgcacagtccgcgaggatgccttgcggaactttacgctgcaactgcaaaagatctccaatgatgctggcatgcccatcattggacagccctgcttctgcaagtatgccacggggcccgatcaagtggagcccatgttccgttatttgaagattactttccctggactacagctggtggttgttgtcctgccgggcaagactccagtctatgccgaggtcaaacgagtgggcgacacggtccttggcatggccacgcagtgtgtccaggccaagaacgtgaacaagacctcgccacagacgctctcgaatctgtgtctcaagatcaatgtgaagctgggcggcattaactcgattctggtgccatccatacgacccaaggtcttcaatgagcccgtcatcttcctgggggccgatgtcacccatcccccggcaggcgacaacaagaaaccatcgatagccgctgtggttggctcaatggatgctcatccctcgcgctatgcggccacggtgcgtgtgcaacagcaccgccaggagatcatacaggagctgagtagcatggtgcgggaattgttgatcatgttctacaaatccaccggcggctataagccgcatcgtatcatactctatcgcgacggcgtctccgagggccagttcccacacgtgctgcaacacgagctgaccgctatacgcgaggcgtgcatcaaattggagccggaatacaggccaggcattacattcattgtcgttcagaagcgccatcacacgcgactcttctgcgccgagaaacgcgagcagagcggcaaatcgggcaatataccagcgggcaccaccgtcgacgttggcatcacccatcccacagagtttgatttctacttgtgcagccatcagggcatccagggcaccagtcgtccctctcactaccatgtgctctgggacgacaaccactttgattccgatgagctgcaatgccttacctatcagctgtgccacacctatgtccgttgcacgcggtctgtgagcatccctgcgccagcctactacgcccatctggttgccttccgagccagataccatctggttgaaaaggagcacgattccggcgaaggatcacatcaaagcggctcatccgaagatcgtacgcccggggccatggcacgcgccataacggttcatgccgacacgaagaaggtcatgtactttgcctaagcagttaaaaggatgaagcaaaaccaaatccacacaacaacaaaaagaacaacaacacaacagcaacaccaacatcaacaagaatgagcactgaaatttcgaaaataattcgaataagcaaaacatgaagaaaatatgtacgaaagccaagtcgaaatcattagaggataatttcaaaatgatgttttttatatatttaagttaaaggaaagccaatatattagcttttaggccacacacacacccatacacacacaaatacacaacacccacacgccaaaatcgtagggattagaaaaaacaaaagggaatcgaatgtttatgcacaagcaggcgcaacaaatgtgaaagagaattctcaaaaataacaaacaaaatttataataaaaagcgtagcgaaacaaactaaagggaacaaacgaaagtcaacaacaacagctgaaacaacaacacacatttgcgatgaacttttgtaataggattaattatatttttacacaagaagaaaaaaaaaacaaaaacaaagtttaaaaaacgtgcagacaaagtgcagacaaccaaaggttttttagtatatcaaaacatgaaacaagttgctgattcaaacacaaacacacaacacacatacaacacgttacaacaacaactcggaattctctgtactgtgaacgaagaccaccaacaaaagcttaaaaactaacaaattaaataaacaaaaaatgacaaattaacaacaatacgacgagcattaaagagagtgtaataattagccataacaagtaaagtgaagggaaaagatcaatccaactcaaaaagtccagaattattaaagggctagctttttagtagaattaagtgcggaactaccaaaacaaaaaacaaaaaacaaaaacaaacaaaaacaaaaaagaaaaacttaagtgaaagcaaccaacatatttaacgaaaactccaatttcaacaagggacaaacttttggtcaaaacaatggctaattatatagtatgtatatatatgagtacatatatatttaggcaactatattgtaagtgtaaaagcacacaaaatcaaacaatacttaaacaagttttcgtttgaagaccgaaagtaaacaatgctaaaaggcaaaatttgctgtctttagttaacagcgagtttttaatttaagttaaaaagcttatgttttgtataaatacacatatatacacacacacacacactatataaacacggcatatcaaatcccaatgtccaac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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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