2024-03-29 11:20:44, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_032482901 3965 bp mRNA linear MAM 19-FEB-2020 DEFINITION PREDICTED: Camelus ferus NRDE-2, necessary for RNA interference, domain containing (NRDE2), mRNA. ACCESSION XM_032482901 VERSION XM_032482901.1 DBLINK BioProject: PRJNA605179 KEYWORDS RefSeq; includes ab initio. SOURCE Camelus ferus (Wild Bactrian camel) ORGANISM Camelus ferus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Tylopoda; Camelidae; Camelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045701.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Camelus ferus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..3965 /organism="Camelus ferus" /mol_type="mRNA" /isolate="YT-003-E" /db_xref="taxon:419612" /chromosome="6" /sex="male" /tissue_type="ear skin" /country="Mongolia" gene 1..3965 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:102520046" CDS 1..1947 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2" /protein_id="XP_032338792.1" /db_xref="GeneID:102520046" /translation="
MALFPAFAGVSEAPDSGSSRKAFEEGDVLSEFGRCSGWLNDDDDEPEDDDQEIKDKTLPRWRIWLAAERSRDQRHWRPWRPDKTRKQTEEDCEDPERQVLFDDIGQSLIRLSSRDLQFQLIAAFLQFLGVPSGFSPPASCLYLAMDENSIFDNGFYDEKPLTFLNLSFSGIGCVGCTDQLGCRRWTRGHGREGEEFIRNIFHLVMPLFSGQERSQLCFSWLRYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPDNRNSFCLWKQYAHLEWLLGNTEDARKVFDSALSIAGSRGLRDHELCELSLLYAELEVELLPDAGGAATARAVHILTRLAENGPCGPCTGQVLGVHILKARKAYEHALQDCLGESCVSDPAPTESFNRLISLVKCFMLFQYLTIGIDAAVRIYEQVFAKLKGSVSPEGSSLEGSARPRSLSQVLEAVTLMHTSLLRFHMKISVYPLAPLREALSEALKLYPGNPVLWRAYIRIQSKSHSASKTRRFFDAVTRSAKPLEPWLFAIEAEKMRKRLVETVQRVDGREVHATIPETGLTHRIRALFDNALRSDSGSRCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYMDAVEYFPDEMQEILDLMTEKELRVRLLLEELELLLED"
misc_feature <106..387 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
atggcgttgttccccgcgtttgcgggcgttagtgaggctcccgatagcgggagctccaggaaagcttttgaagagggcgatgttctgtcggagttcggcaggtgctctggttggctgaatgacgatgatgacgaaccagaagatgatgaccaggaaattaaagataagactctgcccaggtggcggatctggcttgctgcagagcggtcccgagaccagaggcactggcggccgtggcgccccgataagaccaggaagcagactgaggaagactgcgaggatccagagagacaggtgttgtttgatgatatcggacagtctctgatccgactttccagccgggatcttcagtttcagctgattgcggcctttctgcagttcttgggtgtgccttccggcttcagccctccagcctcctgcctctatctggccatggatgagaacagcatcttcgataatggattttatgatgaaaagcccttgacttttctcaacctttcattttccggcatcggctgtgtcggctgcacggaccagttgggatgccggcgctggaccaggggtcatggtcgagaaggcgaggaattcatccgcaacatcttccaccttgtgatgcctttgttttcaggccaggagcggtctcagctctgcttctcctggttacggtatgagatcgcaaaggtgatttggtgtctgcacaccaaaaacaagaagagattaaagtcacaaggaaagaactgcaaaaaactagccaagaatctcctcaaggagccagacaaccgcaacagtttttgcctctggaagcagtacgcgcatctggagtggttgctcggcaacacagaggacgccagaaaagtatttgattcggccctcagcatagcggggagcaggggactgagggatcacgagctctgtgagctcagcctcctgtacgctgagctggaggtggagctgctgccagacgcgggaggggctgccacagcgcgggctgttcacatactgaccagactggccgagaacgggccctgcgggccctgcaccggccaggtcttgggcgttcacattttgaaagcccggaaggcttatgaacacgcgctgcaggactgtttgggtgagagctgtgtctccgatccagcccctaccgagtcctttaaccgcctgattagcttggttaaatgcttcatgctcttccagtatttgaccatagggatcgatgctgctgtgcggatatatgagcaagtatttgcaaaactgaagggctctgtttccccggagggctccagcctggagggcagtgccaggccccggagcctgagccaggtcctcgaggccgtcaccctgatgcacacgagcctgctcagattccacatgaagatcagcgtctacccgctggctcctctgcgagaggctctctcggaggctttaaagttgtatcccggcaacccggttctttggagggcatatatacggattcagagtaagtcccacagcgccagtaagaccagacggttctttgatgctgtcaccaggtctgccaaacccttggagccatggttgtttgccattgaagctgagaaaatgaggaagaggctggtggaaactgtgcagagggtggacggcagggaggtccacgccaccatcccagagaccggcctgacacatcggatcagagccctgtttgacaacgcgttgcggagtgacagcggcagccggtgccccttactgtggaggatgtatttgaattttttggtttccttaggaaataaagaaagaagcaaaggtgtgttctacaaagcacttcagaactgtccctgggcaaaggtgctgtacatggacgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgacggagaaggagctccgggtgcgcctgctgctggaggagctggagcttctacttgaggactagagacctggaggggcgtggggagcgtgtctccgagaccttggcacctgtcctgtccgagccaggaggaaccaggagacggtgacacatacctttgagcgtgtgtgctgagacctctgcctttgacgtttgtttcttggtaatttgtgtctgggttatcagtctctcacctcttgcactttttttgcatgtgcaagtgacacgaaagctgctgtcttacatatcatatatgtgagtatgtgtacatatgtgcatagatgaggatcgtgtcaggcggtaactgagcctagcgtggccggtgtacgagttcttgttcggtccgctgttgccctgcgcggccagtgccagccctgcccgggtgaatatacgttcctgataggcatccttgctgctctcgcagttgaggtaagaaaggtccggttaactcagtactaggatcttctccaccaggccgtatcctcagaccagagcagtggggagtcacttagaacttggtgttctcacctgtatcagatgtgttcagagttctcatttttccctaagccctgctctgtgatgcctccaaccatggacccagcagctagcatcacctgggggcctgttagaaatgcagactctcaggccacaccctggccctgagtcagaaccagtgctctaacgggactcctttcaggggacttgtgtgtacatcacagtgtgggaagcactgccccaagtaaggactctgctgcaggggagctcgccagcagccaccatggccgagtggaggacggagccagccccttcccagcagatccagccctgcctgtgcgacgtgccaaaggtacgcgttcagcgtgcgcgtcagctcagcttaagatgtggaggcccaggccggccgtgtactcgttctgattccaaggctgtaacatttgactgagagaaactaacttccctgaggtcctgctttaaaaaaaaatggacagtttctctcttggcttttttaaaaaaagaaatcatgctgtctagaaccattgaaagcacgtttctttggcacctcgtcccggaagagccagtgttgtggaactaagttttggctagaaactgatggacgcgggttgggtaaagaaggggaggacagcacagctgagcactttctagagagcagctgagagcccccagggaagctgcccgccagccgccgcgaggcttaccttggtctgccccacttcctggctgtaagactgaactgcccagaaaggagagagaagagctggaaacagaaaggcaaggggaagctctgacacatcttcacgctctcgggagggatgaggcttctcaacctggtaacaagggatgttggggctgctatgagattctgcaaccctgacctgagactccttttagaaacccccggtctcctagcaacaccagtacctctttcctgcccccagtgtgctgagaactcacatactccataaacttccaaaagtgaatgcttgctttccttctgaagcccctgccatgtgaactcggcctttgctgcttaaacgactaggatcgctggctattcggctgtgatcctttctttcccatcagctgctgttgaacagcaaccaccagtctgggggcgtgacgtggggacaaacaggtgctgaagcttgccgtccctgtgagcagcgggcagcttccctgatgcccggatccacccgcctgctgctgagccgcaggcgcggacggtccagaaacaggactcggtgttgagaaaaagcaggctttattgggacgaggacactgcacgcgaccaacagacgaaggcagcccgatgggcaccccccccccccccgccacgctcagaaaggtacacggatgtttcactgaagacgagcaactggaacatcagctcccctgggcggcttccccagcctcatccctcccaggggtcaggacactcctgccatttccctaaaggcagctgtggtccctagagatagagcccctcaggggtgccttcttgttttttataaagaacattttcttta
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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