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2020-04-07 23:13:03, GGRNA.v2 : RefSeq release 99 (Mar, 2020)

LOCUS       XM_031890600            4089 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis NRDE-2, necessary for RNA
            interference, domain containing (nrde2), transcript variant X1,
            mRNA.
ACCESSION   XM_031890600
VERSION     XM_031890600.1
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030684.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4089
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="8"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..4089
                     /gene="nrde2"
                     /gene_synonym="c14orf102"
                     /note="NRDE-2, necessary for RNA interference, domain
                     containing; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 15 ESTs, 2 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 39 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:780328"
                     /db_xref="Xenbase:XB-GENE-960400"
     CDS             105..3545
                     /gene="nrde2"
                     /gene_synonym="c14orf102"
                     /codon_start=1
                     /product="nuclear exosome regulator NRDE2 isoform X1"
                     /protein_id="XP_031746460.1"
                     /db_xref="GeneID:780328"
                     /db_xref="Xenbase:XB-GENE-960400"
                     /translation="
MALFPAFADSSSSSKKSPSRQELDWLSNKSFCTEDALSLHQRALQSAQFPQPACHSPRSPFQQELFEESGSDSQATKKKKKKKKKKKQKKKHKQKRGYDEDEEGNTSDSDSRPETRESKETESVASISIFSFSARQDTCVVLPGRGIWLDEVQSVTEETYRIDKKSDPANWEYKSLYQGDIARYKRKGNSCLGINPKKQQINWQDALSEKKEARRKNERYFTKSTMQLLSANADFVSCKESASLKSGEFIPVLDPDKDGVISSSGPISWVNPLGVYDSSTALWLEGKGGPEYDTIQPVPRDNNILAKVEDYNKRIRECPNDIQLWMEFVSFQDELVKQPSMYSTSKGELDGHRTSVKLLLEKKLAILERAIESNPGSTELKLAKLKLCEEFWEAPTLLKEWQKLIFLHPNDSQLWQKYLLFCQGQFSTFSVSKMNSIYGKCLSTLAAVQDGIMLSHNALPDTESNMYDIFLQQCQFLRQAGHTEKVISLFQALTDFTFYKPDSVKDMTTKEQVDFFEPFWDSGEPRFGEKGAKGWSSWMRQQERGGWIIINNLVEDDEDEADEELSIRGKNCPRYKIWLDVECSREARHWLPWRPDTTKKQTEDECEDPERQVLFDDIGPSMFKITSPQMQFQLFKSFLHFLGVPCGANISPRCFYLALDETSIFDHVSPYEMLLNSFEIPLSGIGTVGHLDTLSRSRQQIGYFKEGETFIQNIFQSALSLLHGEEKRNISVWWLQYEISKVVWCLQANNKKKLRSQGKRSKRLAKSLLKEASNRNSLALWKEYALLEWLLGNIDDARKVFDTAISLAGSKGLKDQELCSLCLLYSELEGKLLDNPEENAGSRAVHILTSLTESSPYTPYNSPEHAISILKARKVYEHAMQDCLRQQPHWGRVSLSGCFALFQYLTVSVDAAVVVLRQAADIPMTPETLDNVAQNASSPLQAITLMHTNLLRHHYKVSVYPLSPLRDILMSALKTYPCNVSLWKSYIRTEGKLHNASRVRRFIDSIRRMTPALEPCLFAIRAEEDRKKIVESVQRPDQGEVHSIFPETGLSNRIKALFEYALQSEYGSRCPLLWRLYLHFMVSLGNKERSKGLFYKAIQSCPWAKALYLDAVEYFPEQLQETIDLMTEKELRVRVPLEELDLLLED"
ORIGIN      
ccagagcactttgagtccggcaaaatagctagcgtgccgaaaggtttgtcgggaaacgttgacgtcttttgaatgcgacgcgtttgttgacaagtacaggagtaatggctctatttccagcctttgcagactcttctagttctagtaagaaatctccttcacgccaagagttggactggctgagcaacaagagcttctgcacagaagacgctctttcactacaccagcgtgctttgcagtctgcacaatttcctcaacctgcatgccactcacccaggagtccatttcagcaagagctgtttgaagaaagtggatctgattctcaggcaacaaagaagaagaagaaaaagaaaaaaaaaaagaaacagaaaaaaaagcacaagcaaaagaggggttatgatgaggatgaagaagggaatacaagtgactctgactcaaggcctgagacaagggaatctaaagagactgaaagtgtggcaagtatctcaatattcagtttctctgccaggcaggacacttgtgttgtgctccctggccgtggtatctggctagatgaagtgcagtctgtgacagaggagacatatcgaattgataagaaatctgaccctgccaactgggaatataagtcactgtaccaaggagacatagcacggtacaaacggaaaggaaattcctgtctgggcatcaatccaaagaagcagcaaattaattggcaggacgcattatctgagaagaaagaagcacgcaggaaaaatgagcgttattttaccaagagcacaatgcagcttctcagtgccaatgcagattttgtgtcttgtaaggaaagtgcaagtctgaaatcaggggaatttattcctgtgttagatcctgataaggatggtgttatttcctccagtggccctattagctgggtgaatcctttgggagtgtatgattcttctacagctctgtggttggaaggaaaagggggtccagaatatgatactatacagccagtaccccgggacaacaatattttggcaaaggtggaggattataacaagcggatcagagaatgccctaacgatatccaactatggatggagtttgtctcttttcaggatgagttggtgaagcagcccagcatgtattctaccagcaaaggagagcttgatggccatcggacatctgtgaagctgctactggagaaaaaactagctatactagaaagagccattgagagtaatccgggcagcactgaattaaagcttgcaaagctaaagctctgtgaggaattctgggaggcacccactcttctcaaggaatggcagaaactgatcttcttgcacccaaatgactcgcagctgtggcagaaatatctgctcttctgccagggtcagtttagcactttctctgtgtccaagatgaacagtatttatggcaaatgcctaagcacactggcagcagttcaggatggtattatgctttcccacaatgctctgccagacacagagagcaacatgtatgatatttttctgcaacagtgccagttcttacgccaggctggacacacagagaaagtaatatccttattccaagctcttactgacttcacattttataaaccggacagtgttaaggatatgacaaccaaagagcaggttgacttttttgagcctttttgggacagtggggaacctcgttttggtgagaaaggagcaaagggatggagctcctggatgcgccaacaggagagagggggctggatcatcattaacaatttggtggaggatgatgaagacgaagcagatgaagagttaagcataagaggcaaaaactgtcccagatacaagatttggttggatgttgaatgctcaagggaagcaaggcactggttgccatggcgtccagacaccacaaaaaagcagacagaggatgaatgtgaggatccagagaggcaggttctttttgatgatattggcccgtcaatgttcaagatcaccagtcctcaaatgcagttccagctctttaaatcattcctgcattttcttggggtcccctgtggggctaacatttccccacgctgcttttaccttgctcttgatgagacctccatctttgatcatgtttctccttatgaaatgctgcttaactcgtttgaaatccctctgtctggaatcggtacagttggtcatttagacacattaagcagaagcaggcaacaaataggatactttaaagaaggggaaaccttcatacaaaatatctttcagtcagctctgtcacttttacatggagaagagaagaggaacatctcagtttggtggcttcagtatgaaatttcaaaggttgtttggtgcctgcaagcaaataacaagaaaaagctgagatctcagggcaagaggagcaagcgattggcaaagagcctactgaaggaagcatcaaacagaaacagtctggcactctggaaggaatatgctcttctagaatggcttctgggcaatattgatgatgcccgaaaggtgtttgatacagccataagcttagcaggaagcaaagggttaaaggaccaggaattatgcagtttgtgtctgctgtattcagaactggaagggaagctactggacaatccagaggaaaatgcggggtcccgtgctgttcatatacttaccagccttacagaaagctctccttacactccctataatagccctgagcatgctattagtattctgaaagcacgcaaagtatatgaacacgccatgcaggactgcctgaggcaacagccacattgggggcgtgttagcttatctggatgctttgcactttttcagtatctaactgtgagcgttgatgctgctgttgtggtattaagacaggctgctgacatcccaatgactcctgaaacattggacaatgttgctcagaacgccagcagcccattgcaagcaattacactgatgcacacaaatctgctcagacaccattataaggtcagtgtctatcctctgagtccacttagagacatactgatgtctgccttaaagacatatccctgcaatgtttctctgtggaaatcctacatcagaactgaaggtaaattacacaatgccagcagggtgagaaggtttatagacagtatcaggagaatgacaccagctctggaaccatgtctgttcgccatcagagcagaggaggacagaaaaaaaatagtagaatctgtacaaaggccagatcaaggggaggttcactctattttccctgaaactggtttgtccaatcgaatcaaggccctttttgaatatgctcttcaaagtgaatatggttccaggtgccctctgctctggaggctgtacttgcactttatggtgtctttgggaaacaaggagagaagcaaaggcctgttctacaaagcaatacagagctgcccatgggcaaaggcactatacttggatgctgtagaatatttcccggagcagctgcaagagaccattgatctaatgactgaaaaggagctgagagtacgagttcccctagaggaactggatctgctgctggaagattaaaccacagaattattgaattgtttcccttctgggcaacatctctaaagcaacaaacttgtacaatacattttataatatatatttatttttaaggaaaaacaataaaatacatccacacccaaaagtttccgctttataaatgtgcaagataagtaggttggttctttttcccaaaaatgatgtgtgagttacttaactcaaacagggtgtcctttatgattgctggagccgaaaggctcaaccagtcataaatctgccccttagattgacttctttgatgccaaatgtattgctctttgtctaccccaggccaaaagagttaaatcatattagcttgtgaagatgcagttttaagactgtgccacaacaagatatcagatatacttatgttaaattgcaacaagacatagaattttatatttcaaaatgttaagcgctcacatgaccaataatccaaagatttgccattaacaccaaacgctcaccaattgcgagtgatttatgatggtatagaataaagattctgtaacttgttttttcattt
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]