2024-04-26 23:52:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_031719924 4959 bp mRNA linear PLN 27-NOV-2019 DEFINITION Blastomyces gilchristii SLH14081 RNA interference and silencing protein (BDBG_00523), mRNA. ACCESSION XM_031719924 VERSION XM_031719924.1 DBLINK BioProject: PRJNA41099 BioSample: SAMN02953742 KEYWORDS RefSeq. SOURCE Blastomyces gilchristii SLH14081 ORGANISM Blastomyces gilchristii SLH14081 Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Blastomyces. REFERENCE 1 (bases 1 to 4959) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE The Genome Sequence of Blastomyces dermatitidis strain SLH14081 JOURNAL Unpublished REFERENCE 2 (bases 1 to 4959) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (27-NOV-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4959) AUTHORS Champion,M., Cuomo,C., Ma,L.-J., Henn,M.R., Klein,B., Goldman,B., Young,S., Kodira,C.D., Zeng,Q., Koehrsen,M., Alvarado,L., Berlin,A.M., Heiman,D.I., Hepburn,T.A., Saif,S., Shea,T.D., Shenoy,N., Sykes,S., Galagan,J., Nusbaum,C. and Birren,B. CONSRTM The Broad Institute Genome Sequencing Platform, Broad Institute Microbial Sequencing Center. TITLE Direct Submission JOURNAL Submitted (06-FEB-2009) Broad Institute of MIT and Harvard, 7 Cambridge Center, Cambridge, MA 02142, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_003101682). FEATURES Location/Qualifiers source 1..4959 /organism="Blastomyces gilchristii SLH14081" /mol_type="mRNA" /strain="SLH14081" /db_xref="taxon:559298" /chromosome="Unknown" gene 1..4959 /locus_tag="BDBG_00523" /db_xref="GeneID:8507895" CDS 273..3401 /locus_tag="BDBG_00523" /codon_start=1 /product="RNA interference and silencing protein" /protein_id="XP_031575846.1" /db_xref="GeneID:8507895" /translation="
MSGQQPRGQRGRGGGRGMGGDPGGQRGGQRGRGSDRGRGPHPIFDAPSGGRGRGDRGGFRGDRGGRGDRGGFRGGRGGGTRGPEVYSQASGGIPAPDPKVKKVENSYKGPAGSGKELSLESLSINRNFPLRPAFGTQGRPVLLWANYFEIVSSFNLTLHRYKVEVQEQDGKTPAGKKLKRIIELLLEEHFGNMKNQIATDYKATLVCKTAINLPQEMFSITYRLEYEDEPAPRARTYKVRVVAIGSLDVAPLLQYLSSPRSGEQLPAKEEIIQALNIVLGHNPKTNRELLSIGANKHFPLGRGGESYDLSGGLTALKGFFVSVRATTSRLLVNVQVKATPCYSEGSLPDIMNSFSASIRGPTHFHKLNRFLKRVRVSVNHIVRKNKSGRVILRIKTIEGLAHQSDGRYLQNPPQVPWLGAGPKDVKFFPDGPTPPAEGQSKKNGKKQKKGPVKPGGDSSTGSYISVYDYFKRNYPNIPELNNALPVVNVGSKEEPIYLPAEVCHVLPGQPANAKISPQQTQNMIRFAVRRPVENAKSIVVNGTQVLGFTPHLNPMLAGMGLSLLPNLITVPGRVLEGPAIIQYKGQSFKSPHGGNWNLQKVAFSHGSQLPAWTFLYYQDGRTDPAVVMESVDRFIDMARVQGLAVPVPSRPIAVNVPPRRDVEDIPLDPIFAEIRQQSRVRLVLVILPFASPQIYSQVKYRGDIKDGIHTICVVAEKFRKNQPQYFANVALKFNLKLGGVNHKLQPSKLGVISEGKTMVVGIDVTHPAPGSLSTAPSIAGMVASVDKVLGQWPATIRLQQQARAEMVSDLDIMLQSRLRLWQKNNSKSLPENILIYRDGVSEGQYGKVLDEELPLLRSACKAIYPADKTKKGLPKFTIIIVGKRHNTRFYPTDLKDADNNSNPNSGTVVDRGVTESRHWDFFLQAHTALQGTARPAHYYVILDEIFTGRKTAGRFDSIADELEDLTHNLCYLFGRATKAVSVCPPAYYADLVCERARRYLSRYFDVTPDTSVASSGASDVGPVPIGDDVRIHSDLVDTMFYI"
misc_feature 663..3395 /locus_tag="BDBG_00523" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1932..3272 /locus_tag="BDBG_00523" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2355..2357,2367..2369,2403..2414,2421..2423, 2445..2447,2454..2456,2466..2468,2478..2480) /locus_tag="BDBG_00523" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2559..2561,2565..2567,2784..2786,3240..3242) /locus_tag="BDBG_00523" /note="active site" /db_xref="CDD:240015" ORIGIN
gatccctacggcaacgccactggagccgctacacttagttggttacaccccaacaaaaaaacaaacaaaacatgccaagaatggcaaagagacagttggcaacgagttacataccctgcaaacttagcgctgggattgaggcctccagcaggggtcccgtcattcactggagcctcatctcaaatccacggctggtctgaaggatatacagtagtcagcttaatcccgattttttttgattgtatcattcttttccctaaccaagcagccaaatgtcaggacagcagcctcgaggtcagagagggcggggcggagggaggggaatggggggagaccccgggggtcagcgaggtggacaacgtggacgcggctctgaccgtggccgaggtccacatcctatcttcgatgcgccatcgggcggacgagggcgtggtgaccgtggcgggtttaggggagatcggggcggccgtggtgatcgtggtgggtttcgcggaggacgaggaggcggaactcgtgggccagaggtgtattcccaagctagcgggggtattcctgctccggatcccaaggtcaaaaaggtcgagaatagctataaaggacctgctggctccggaaaggaattgagtttagaatctctttcaattaacaggaatttccctctaagaccagccttcgggacacaaggaagaccagtcttactgtgggccaattatttcgaaatcgtctcaagcttcaatctcaccctgcaccgctataaggtggaagtccaggaacaggacggtaaaacccctgctggcaaaaagcttaagcgtattatcgagcttctgttggaagagcacttcggaaacatgaaaaaccaaattgcaactgactacaaagcaacactggtctgcaaaaccgcaatcaaccttccccaggagatgttttcgataacgtatcgtctcgaatatgaagatgaacctgctcccagagccaggacttacaaggttcgggtcgtcgcaattggttctctcgatgtggcaccgttgctccaatatctctcctcacccaggagcggggaacaactcccggccaaagaagagatcatccaggcattgaatatcgtcctgggccacaaccccaagacaaatcgcgaattgctttcaattggcgcaaacaaacactttccacttggccggggcggggaaagctatgatctttctggtggactcactgcactcaagggcttcttcgtcagcgtccgtgccacgacttcccgcctccttgtgaatgtccaagtcaaagctaccccgtgctacagtgaagggagcctgccagatattatgaacagcttttcagccagcatacgaggccctacgcactttcacaaactcaaccgattccttaagcgagtacgcgtgagcgtcaatcatatcgtccgcaaaaataaatcaggcagggtcatattgcgaatcaaaactattgaaggtcttgcacatcagagtgatgggcgttatttgcagaacccgccacaggtaccttggctaggagcaggtccgaaagatgtcaagttctttcctgatggaccaacacccccggcagagggccaaagcaagaagaacgggaaaaaacagaaaaagggccctgtgaagccgggtggagattcttctacgggttcatatattagcgtctacgactattttaaacgcaattaccccaatatccccgagttgaacaacgcattaccagttgtcaatgttggcagcaaggaggagccgatctacctgcctgctgaggtctgccacgttctgcctggccagccggcaaatgccaaaatctccccccaacagactcagaacatgattcgctttgcagtccggagacccgtggaaaatgccaagtcgattgtcgtaaatggaacccaggtgctcgggtttaccccacatttgaatcctatgctggctggtatgggattatctctgttgccaaacttgattactgttcctggtcgagtgctggagggtcccgctattattcagtacaagggacagagctttaaaagccctcacggcgggaactggaaccttcagaaagtcgcattctcacatgggtcccagctacctgcctggacattcctttactaccaagacggccgaaccgatccagcggttgttatggagagcgttgatagatttatagatatggcaagggtacaagggctcgctgttccagtgcctagccgtccaatcgctgtcaacgttccccctcgtcgagatgtggaggatataccactggaccccatctttgccgagattcgccagcagtcgcgagtgagattggttctggtgatcctaccttttgcaagccctcaaatttacagccaggtaaagtataggggagatatcaaggacggcatccatactatttgcgtagtcgcagaaaagttcaggaagaatcagcctcaatacttcgccaacgttgcgctaaaattcaacctgaagctcggaggagtcaaccacaaacttcagccgtccaaactgggggttatatcggaaggtaagacaatggttgtgggcattgatgtcacgcatcctgccccgggttcgctctccactgcaccaagcatagccgggatggttgcaagcgtggataaagtcctcggtcaatggcccgccaccatccgtcttcaacagcaggctcgcgcagagatggtgagtgatcttgatataatgctccaatctcgtcttcgcctttggcagaagaacaactccaagagcctcccggagaatatcctgatctaccgcgacggggtatcagaaggccaatacggcaaagtcctggacgaagaactacccctgctccgcagcgcgtgcaaagctatctacccagccgacaaaaccaagaaaggcctccccaaattcaccatcatcatcgtcggcaaacggcacaatacgcggttctacccaaccgatctcaaggacgcggacaacaactcaaatcccaacagcggaaccgtcgtcgaccgcggcgtcaccgaatcgcgccactgggatttcttcctccaagcccacaccgcactgcaggggaccgctcggccagcccactactacgtgatcctcgatgagatattcaccgggcggaagactgcaggccgcttcgacagcattgccgatgagcttgaagacctaacccataatctctgctacctgttcggacgagcaaccaaggccgtcagcgtctgcccgccggcgtactatgcggatctagtctgtgagcgcgccaggcgctacctaagtcgatatttcgacgtcacgcctgacaccagtgttgcttcgtctggtgctagtgatgtgggtcctgtgcctattggtgacgatgttcgcatacattctgacctggtggatactatgttttatatctgagtgatatctgcgtatatatcgtgtcgaagggaaggggggtatcttgggatcggggaagttgtggaaaatgctatggaggttgtgaagtcagtatggaatagtacagtcattgctctgtcattagtggtattttgaaatcttgattttgctttttagggttggttattggtctatttaccgtgatcatatctgagtatatgattgggcacatatcaaattgataagttgacacagagctttacgagaatgcaattctaaactaatgtcttggatatttctcagagagtttatctagcaaatgggtattaattgagtgatcagagttcaatcccatgcaaacctccaactactcaaatatactccgtgccaaaagctcattatcatcaccaaaatatccaccataccttcatattcatacatagagcgcacctgtcgaaatgcaaatgtacaaccttttaatcccaataaaaaaatcaaaagaaaaaaagccagctagagaaaaagagaaacctcccctccgccaatatcaccgaacaagccctactaccccccttccccccaacgaccgcacaacccccttcttcagccgaaactgcctctcaatcacctcctccgacacccctcccttatccctcatcgccaaaatatgcctaatactcacgacatccaaaaactcgcgcccggaatggctcggtcggccaacggactcgagttcgagttcggcggccttctctaaccgggcgcgggaggagagaacgaggagggctgggttggaggatgtggaggaggaggtggagggggggaagacgatggagagggattgctgaagctgcgggttttggggttggttgaaagggttgggggtgacgggcccgatggagcggagggaggcggcgaactgaggatcgcgggcttcgaggtcgatggctgtggttatttgaggccgggttcgctcgccttctcttctgcatggaatactggtcctggctgttcccgtcggcttgatgccctggccgctggatccgcggctctggcaccaccgggcccggtggtcggtgcggagggtttcttggggtattgacgccgtgcagctgcattagctgccgcctttatgggtttcgacgatgatgcgcccattgcaattttgtgtgtgcagcgttactggggagtcggagaacgatactgtacagtaactagctcggtgagcggagaatgatggatggttttgcggagacggtccaagcttctacgggggccaaagctgacaggaatgtaggtttggtggaacgctaatttgcgtctagggctagaaggtggggaggggagagcagaataaataagacacacaggtgttctaggaatcgcatgcatgggttctactaaataaataacgacctagagatacatctgttcatgaaaaaagcgctaggaagattccagctccaaagtgaagattctttgtcatatgccattttgccccgaatagcatgacgaaaaagcattagcaaaaccagaccccctagcgcagccctgcgaggcgcctctcctggacctcgct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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