2024-03-29 00:38:23, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030774354 3550 bp mRNA linear VRT 16-SEP-2019 DEFINITION PREDICTED: Chanos chanos NRDE-2, necessary for RNA interference, domain containing (nrde2), mRNA. ACCESSION XM_030774354 VERSION XM_030774354.1 DBLINK BioProject: PRJNA564626 KEYWORDS RefSeq. SOURCE Chanos chanos (milkfish) ORGANISM Chanos chanos Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Gonorynchiformes; Chanidae; Chanos. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044495.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Chanos chanos Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3550 /organism="Chanos chanos" /mol_type="mRNA" /db_xref="taxon:29144" /chromosome="1" gene 1..3550 /gene="nrde2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:115811930" CDS 21..3500 /gene="nrde2" /codon_start=1 /product="protein NRDE2 homolog" /protein_id="XP_030630214.1" /db_xref="GeneID:115811930" /translation="
MALFPAFGGASNTKVESSRKDLEWLSNQSFHTDDALTLHQRVVEKASTEAQGLSETRDQKHQKEEHGCDSDEYIRSKRKKKKEKKKKRKKQKKRTGGSSESSSSESDTVYPSDLLKKAESAERQESQVQPGDSFAWLDDLQGSTEKLFCIDRRADPANWEYKSLYRGDIARYKRKGSSSLGLDSKTQAVSWNDSGPEKKRVDRKPERYFSSSFRQVLRSDGQPALPALTEPLTNTPFIPLPAYPEDQNPAAQQPSSWVNPLGVYDSSTTLWLQGKGQAEVKGQQQRGEEPAGVGGGPLMARVEEFNRKLRENPTETHTWLEFIRFQDELAAHSGTFSGAQDSDAERRRGSVRALLEKKVAIAERAVEANPSCVEVKLERLRLCKELWEPATLLKEWKKLVFLHPNSAPLWRHYLLFTQSHFSTFSVSKVNAVYGKCLSTLSSVLDGSMVSHPPLPGTEEDMLAIFLQQCHFLRQAGHSEKAVCLFQALLDFTFYKPDSVKELPTRQQVEFFEPFWDSGEPRVGEHGARGWKAWMHQQERGGWVVPPEAEDDEDEDEEDSEIKDKSWPKWKIWLDVESSREAKHWLPWRPDKAKGQSEEDCEDPDRQVLFDDIGSSMIRIRSPALQLRFILSFLQFLGLPGPVGTTRSPSHSLILDDLSLLAEGPDPERPLTSYDSLKTGVCSVGHMTFLLDPRRQPGLCKSGEEFVRNVLEQIMPLVSVQDRAALSLCWLQYEKLKVLRCVCSRNKKRLKAQGKRSKRLAKRLLKEPENRGSLALWREYAHLEWLLGNLEEARKVFDTALGLGISRGLADPDLCDLCLLYAQLEVEDAWRVGAQNSGTPPTSSSAVHVLTKLAEGTGYAPFSGQINPVTILKARKTYEQTLMASLPGQEDAVSHGGSKKLRRVAALVGCFGLFQYLTMGIDAADAVYSQARDRLAERSAMEGSSDSETPSECEAVTVQHLALLKHHVSTNVCPLSRLRLALTSSLTRLPSSAPLWQLYIQVESRYHSAGRSRRFFHSVAKDNRSVIPHLFAITAEQRRKRLLDSVQRSGLPGEVLPTLPENGLSNRIRSLFEVATATETGAHCPLLWRMYLNFMVSDGNAERGRGIFYKALQDVPWVKGLYMDAVQLFPEHIQEFLDLLTEKELRLRAPMEEVDILLED"
misc_feature 462..743 /gene="nrde2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(462..485,492..497,507..512,516..518,522..566, 573..581,585..593,615..623,633..638,642..647,654..674, 702..713,717..743) /gene="nrde2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 930..1931 /gene="nrde2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ttttcattgaaaagagcaacatggccttattccctgcgtttgggggagcctcaaacacaaaagttgaaagctcccgtaaagacctggaatggctgagcaatcagagtttccacacagatgatgccctgactctccatcagagagttgtggagaaagccagtactgaggctcagggcttgtcggagacaagagaccaaaaacatcaaaaagaagagcatggctgtgatagcgatgagtatatcagatccaaaaggaagaaaaagaaggaaaagaagaagaaacgaaagaagcagaagaagaggaccggggggtcttctgagagcagcagctcagagtcagatacagtctatcccagtgacctgctgaaaaaagcagagagcgctgagcgacaggaatctcaagttcagcccggagattccttcgcgtggctggatgacctccagggctccaccgagaaacttttctgcatcgacaggagagcagatccagccaactgggaatacaagtctctctacagaggagatatagccaggtataagagaaaaggcagctcctcgttgggactggacagcaagacccaggctgtgagctggaatgactctggtccggagaagaaacgcgtggacagaaagccagaacggtacttctcctcaagtttccggcaagttctgcgctcagacggccagccagctctgcccgcactaacagaacccctgaccaacacccctttcattccccttcccgcctacccagaggaccagaaccctgccgcgcagcagcccagctcctgggtcaacccactaggtgtttacgactccagcaccaccctctggctccagggcaaaggtcaggcagaggttaaaggccagcagcagcgaggcgaggagccggcgggggtcggaggcggaccgctcatggcacgcgtggaggagttcaataggaaactgcgggagaatcccacagaaacgcacacatggctggagttcatcaggtttcaggatgagctggcagcccattccggcactttctccggggcgcaggacagtgacgcggagaggaggcgcgggtcggttcgtgctttgctggagaagaaggtagccattgccgagcgggccgtggaggccaatcccagctgcgtggaggtcaagttggagcgtctcagactgtgcaaggagctttgggaaccagccacactgctgaaagagtggaagaaactggtattcctccacccaaacagtgctcccctttggagacactacctcctcttcacacaaagtcactttagtactttctcggtgtccaaagtcaacgcagtctatggaaagtgcctgagcactctgagttcagtgctggatgggagtatggtttctcacccaccattgccaggcactgaggaggacatgctagcaatcttcctacagcagtgccatttcctgcggcaggctggccactcagagaaggctgtctgtctcttccaagctctgctagacttcaccttctacaagccagacagtgtcaaagagctacccaccagacagcaggtggagttttttgagccattttgggacagtggggaacccagggttggagagcatggggccaggggctggaaagcttggatgcatcagcaagagagaggaggctgggtggtccctccagaggctgaggatgatgaagatgaggacgaggaagattctgagatcaaggacaaatcctggccaaagtggaagatctggttagatgtcgaatcgtctcgggaggcaaaacactggttaccttggagaccagacaaagcaaagggccaatcagaagaggactgtgaagaccctgacagacaggttctctttgatgacattgggtcttctatgatcaggataagaagcccagccctgcagctacgctttatcctctcctttcttcagttccttggcctgccaggacctgtgggtaccaccagaagtccctcccacagtctcatcctggatgacctctcactcttggctgaaggtcctgaccctgaaagacccctgacctcttatgactctctaaagacaggagtctgctctgtgggtcacatgacattcttgctcgaccccaggaggcagccaggcctgtgtaaatcaggggaggagtttgtgcggaatgttctagaacagattatgcctctggtgtctgtgcaggacagagctgctctctccctctgctggctgcagtatgagaagctcaaggtgctgaggtgtgtttgcagcaggaataagaagcgtttgaaagctcaaggtaaacgcagtaagaggctggcaaagcgtttgctgaaggaaccagagaacagaggcagtttggccctctggagggagtatgcccatctggagtggcttctgggtaatctggaggaggcacgcaaggtgttcgacacggctctgggactcggcatatctcgaggcttggctgatcctgacctttgtgacctctgcctactttatgcccaattagaagttgaggacgcctggagggttggtgcacaaaactctgggactccccccacctcctcttcagcggtccatgtgctcaccaaattagctgagggtacagggtacgctccattctcaggccaaattaaccctgtaactatactaaaagctaggaaaacctatgagcagaccctaatggccagcctgccaggacaggaagatgccgtttcccacgggggcagtaagaaacttaggagagtggctgcactggttggttgttttggactctttcagtatttgacaatgggaatagatgctgctgatgcggtctatagccaagcaagggacagactagctgagagatcagcaatggagggcagcagtgactcagaaacaccctcagaatgtgaggctgtgactgtccagcatctagcgctgttaaaacaccatgtcagcaccaacgtgtgcccactgtcacgactcagactggcgctgacctcttcactcacgcgtttgccctccagcgcccccttgtggcagctgtacatacaggtcgaaagccgttaccatagcgcaggccgctcccgccggtttttccacagcgtggccaaggacaaccggagcgtcatcccacacctgtttgccatcactgcggaacagcgtcgaaaaaggctgctggattcagtgcagaggtctggcctccctggggaagttctccccaccctccccgaaaatggcctcagtaaccgtatccgctcactttttgaggttgccacggcaaccgagactggggcacactgtcctttgctatggaggatgtacttgaacttcatggtgtctgatgggaatgcagagagaggcagaggaatcttctataaagcacttcaagatgtaccatgggtaaagggtttgtacatggacgctgttcagctcttccctgagcacatccaggagttcttagacctcctgacggaaaaggagctgcgactgagggcgcccatggaggaggtggacatcctgctggaggactaacaaaaacacatctttgccaaagaaatctcagctttggacattctgttcat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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