LOCUS       XM_030558935            4076 bp    mRNA    linear   VRT 24-AUG-2019
DEFINITION  PREDICTED: Gopherus evgoodei NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X4,
            mRNA.
ACCESSION   XM_030558935
VERSION     XM_030558935.1
DBLINK      BioProject: PRJNA559383
KEYWORDS    RefSeq.
SOURCE      Gopherus evgoodei (Goodes thornscrub tortoise)
  ORGANISM  Gopherus evgoodei
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira;
            Testudinoidea; Testudinidae; Gopherus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_044325.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Gopherus evgoodei Annotation Release
                                           100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4076
                     /organism="Gopherus evgoodei"
                     /mol_type="mRNA"
                     /db_xref="taxon:1825980"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="whole blood"
                     /ecotype="Sinaloan lineage"
                     /geo_loc_name="Mexico: Sonora"
                     /collection_date="2010-08-10"
                     /collected_by="T. Edwards"
     gene            1..4076
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:115649858"
     CDS             487..3363
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X4"
                     /protein_id="XP_030414795.1"
                     /db_xref="GeneID:115649858"
                     /translation="

MVEKKQSHKRPERYFTKNSVQLLSTDGIPVYSKSQTSSSGPSTFIPVSQLDSDAPPPTTCVNPLGIYDPLTTLWLEGKGPPEHETLKQQASQETSENVNSILKAKVEEYNRMVRENPRDVHIWMEFVSFQDEVMRGPSPYAIKDGEQEIRRKSFKLILEKKLAILERAIESNPNDVDLKLAKLKLCTEFWEPSSLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKVHSLYGKCLSTLAAVQDGSMVSHPVLPGTEEAMLAVFLQQCHFLRQAGHSEKAVSLFQALIDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIIINKPDEDEEDVDEDQEIKDKTLPKWQIWLDIECSRETRHWLPWRPDKTKKQTEEDCDDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFVGVPCGRSLFPSNLYIAMDENNIFDTEQSERPLTTFDSLLSGVNSIGHMDTMTRGRQHIGHCKEGEEFIQNVFHLILPLFSGKEKANLSVCWLQYEISKVVQCLQAKNKKKLKSQGKKSKKLAKNLLKASENRNNLSLWKLYAYLEWLLGNTEDARKVFDTALCLAGTEGMRNTQLCNLSLLYASLEVELLENLEETVMSRALHILTKLAESGPYVPYTGQLLSVNILKARKAYEHALQDYLSESPVSNWDQASSSSQLVNLVGCYALFQYLTVGIDAAVLICRHISEKLKGSASQKFESIGENLGIHNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREVLMEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVTRSTKSLEPWLFAIQAEEMRKKLVENVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGNKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQETLDLMTEKELRVRVPIEELELLLED"

     misc_feature    <493..627
                     /gene="NRDE2"
                     /note="MTR4-interacting domain (MID) found in nuclear
                     exosome regulator NRDE2 and similar proteins; Region:
                     NRDE2_MID; cd22200"
                     /db_xref="CDD:412062"
     misc_feature    808..1806
                     /gene="NRDE2"
                     /note="necessary for RNA interference; Region: NRDE-2;
                     pfam08424"
                     /db_xref="CDD:462472"
ORIGIN      

agagaccttcaggacagacaagaatccagaccctgcaaactgggaatacaagtcactgtatcgaggggacatagcaaggcaatggcgattttagctggtatctcactcctgaaggtggtaaaggcacagagaacatagctgtgctggtccccagagctgtttaggcccgtatgctgctagcctgtttactgcaatggtgcctgccaaagttatcgctgactggcatgggaaagtgtcctactgtggaggaagaaataaggctgccatcccatgaaagcttcaggagaggattgcagtgtacctccatgaaaacttcattgagattgctcaggaggattcaaggggcatccctgtgtacataaacaaactgctctgcatggccccctgcctaactctagagggagaatgaaaaactgatacaagcggaaaggggactcatgccttggtattgacctaacgaaacaatgtataacttgggaaagttccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcacgaagaatagtgtgcagttattgagcacagatggaattccagtttacagtaaaagccaaacttcttcatctggtccaagcacttttataccggtttcacaactggacagtgatgctcctcctccaacaacctgtgtgaatcctcttgggatttatgatccattgaccacactctggttggaaggaaaaggtcccccagagcatgagactttaaagcagcaggcatcccaagagaccagtgagaatgttaactctattctaaaggcaaaagtggaagaatataataggatggtcagagaaaatccaagagatgttcacatttggatggaatttgtttcttttcaggatgaagtaatgagaggacccagcccttacgccatcaaagatggagagcaggaaataaggagaaaatcattcaagctaatcctagaaaagaaactggccattttagagagagctattgaaagcaacccaaatgatgttgatctgaaacttgccaagctgaagctttgtacagaattctgggaaccatcaagtttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagtcctgtggcagaaatatctcttattttgtcaaagtcagttcagcaccttttcagtttcaaaagtccatagtttatatggaaaatgtttgagcactttggcagctgtacaggatggcagcatggtatcacatcctgtactgcctggcacagaagaagctatgttagctgtctttcttcagcagtgccattttcttagacaggcgggccattctgagaaagctgtgtctttgttccaagccctgattgacttcaccttctttaaacctgacagcgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggatagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattatcatcaataaacctgatgaggatgaggaagatgtagatgaagatcaagaaataaaggataaaactctacctaaatggcaaatttggctggacattgaatgttcccgtgaaacaaggcattggctgccttggcgacctgacaaaactaaaaagcagactgaagaagattgtgacgacccagagagacaggtattgtttgatgatcttggtccatctttaatcagactttctagtccagatcttcagtttcagctgctatactcatttctgcaattcgtgggagtcccatgtgggcgtagtctgtttccttcaaatctctatatcgctatggatgagaacaatatctttgacactgagcagtctgagaggccattgacgacttttgactcactgctttctggagtcaatagtattggccatatggacacaatgacaagagggagacagcacataggacactgtaaggaaggagaggagttcatacagaatgtctttcatttaatattgccgttgttttcaggaaaggaaaaggcaaacctttctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagcaaaaaacaagaagaaactgaagtcacagggaaagaaaagcaaaaaactagccaagaatctccttaaggcatctgaaaaccgaaacaacctttccctctggaaactgtatgcctacttggaatggttacttggcaacactgaagatgctagaaaagtgtttgatacagctctttgcttagcaggcactgaaggaatgagaaatacccaactctgtaatctgagcctgctttatgcttcactagaagtggagctactagagaatttggaggaaactgttatgtcacgtgctttacatatattgaccaaactggctgaaagtggaccatatgtaccttatactgggcaactgctatctgtgaatatcttgaaagctcggaaggcatatgagcatgcattgcaagattatttaagtgaaagtccagtctctaattgggatcaagccagcagttctagccaactggttaatttagttggttgttatgcacttttccagtatttgactgttgggattgatgctgctgtgttaatatgtagacatatttctgaaaagcttaaaggttctgcttcacagaagtttgaaagcattggagaaaatcttggcattcataatttccccactgctcttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttaccctttaaatccactgcgagaggtactaatggaagctttgaagctgtatcctagcaaccagtctctttggaggtcatatatccagatccaaagcaagtctcacaatgctagcaaagcacgaagattttttgatagtgtcacaaggtctactaagtccctagagccgtggctgtttgcaatccaagcagaggagatgagaaagaagcttgtcgagaatgttcagagagtagatgttggagaaatatattcaacaattcctgaaactgggttaacaaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccattgctgtggagaatgtatttgaactttctgttttctctaggaaataaagaaaggagcaaaggactgttttataaagcccttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagagtattttccagatcaactgcaagagaccctagatctaatgactgaaaaagaattgagagtaagggtacctatagaagaactggaattgctactggaagattaaaaaaaagatggtgcaagaacaacaacaacaaaaaagaaaaagaaaaagcaaacctaaaaaaagggaatgttgacgtccaaaagtctgttttcaactattatctttgactgggacttcaatggactatgcacatatttttcttactaaaaataatttgttaaaaactttgctattcctatgccgcactactagctgtaaatatcttaaaatttgttccacatcttgtagtgggctgctttacacatgtaaatacatctgtttttctggaaagcaaaatccacaaaatgatacttaccgataattaatttgctgttggaccccacctacagttcatatgctacagtttaatacagccgttcccttgaattcagtggaatgtcaagacatgcctactacaatttgctaggcagcacaggaagtaaacatctgccaaatgtaccctttacaatctgctactgtcaacaggctaaatatgtcctgcttggtgtggatgtatatataaatatccacatatgttccagtatcttgctctctgtacaaaacaagaagataagtaaaactcttgaaaaaaattaccagaacaacaattagctcagttgataaactgttaaatgccaaaacttgtttgacaaagtatcagttttgtctttgtatgtgtaataatatgacaattctaatgtaaatatttattaaaacatacttaaatattttaa

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