2024-03-29 19:52:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_030325783 4165 bp mRNA linear MAM 09-SEP-2020 DEFINITION PREDICTED: Lynx canadensis argonaute RISC catalytic component 3 (AGO3), transcript variant X1, mRNA. ACCESSION XM_030325783 VERSION XM_030325783.1 DBLINK BioProject: PRJNA558991 KEYWORDS RefSeq. SOURCE Lynx canadensis (Canada lynx) ORGANISM Lynx canadensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Lynx. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_044310.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Lynx canadensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4165 /organism="Lynx canadensis" /mol_type="mRNA" /isolate="LIC74" /db_xref="taxon:61383" /chromosome="C1" /sex="male" /tissue_type="muscle, distal limb" /country="USA: Aroostook County, Maine" /lat_lon="42.2466 N 71.6746 W" /collection_date="2017-12-05" /collected_by="Tanya Lama" gene 1..4165 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 28 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:115520956" CDS 271..2853 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_030181643.1" /db_xref="GeneID:115520956" /translation="
MEIGSAGPVGAQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKRSLYTANPLPVATTGVDLDVTLPGEGGKDRPFKVSIKFVSRVSWHLLHEVLTGRTLPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 487..771 /gene="AGO3" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 799..951 /gene="AGO3" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 952..1314 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1108..1110,1153..1155,1195..1197,1207..1209, 1261..1263,1282..1284,1288..1290) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1447..2724 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1858..1860,1870..1872,1906..1917,1924..1926, 1948..1950,1957..1959,1969..1971,1981..1983) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2062..2064,2068..2070,2278..2280,2692..2694) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
gtaagcggccgcgggcgacgcaagttccgcacggggttctcctctcctcgattcacgcttctccttcctctcgcctagtcgcacgctgcctccccacggcggctcttcctgacgagagctttcggagtgcggtagctgaggagaagccatcaccacctcgcctcggggccgaacgagggtgcctgtcgcgcctcgtcgccccctgcgctgcctccttgcccccagtggtgggcgcccttctcgctcgaagcactccccccagctccatgaatggaaatcggctccgcaggacccgttggggcccagcccctactcatggtgcccagaagacctggctatggcaccatgggcaaacccattaaattgctggctaactgttttcaagttgaaatcccaaagattgatgtctacctctatgaggtagatattaaaccagacaagtgtcctaggagagtgaacagagaggtggttgactcaatggttcaacattttaaagtgactatatttggggatcgtagaccagtttatgatggaaaaagaagtctttacacagccaatccacttcctgtggcaactactggggtagatttagatgttactttacctggggaaggtggaaaagatcgacctttcaaggtgtcgattaagtttgtctctcgggtgagttggcacctactacatgaagtactgacaggacggaccttgcctgagccgctggaattagacaagccaatcagtactaatcctgtccatgctgttgatgtggtgctacgacatctgccctccatgaaatatacgcctgtggggcgttcctttttctcagctcccgaaggatatgaccaccctctgggagggggcagggaagtatggtttggattccatcaatctgttcggcctgccatgtggaaaatgatgcttaatattgatgtttctgccactgccttctacaaagcacaacctgtaattcaattcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgtgtttgtaatgtaacaagaaggcctgccagtcatcaaacctttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccttgtctgcaagtggggcaggaacagaaacatacctacctgccactagaagtctgtaatatcgtggccgggcaacgatgtatcaagaagctaacggacaatcagacttccactatgatcaaagcaacagcaagatctgcgccagatagacaagaggagattagcagattggtgagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgggatgaaatggcccatgtaaccggacgtgtactcccagcacctatgctgcagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccatacaggagttgaaataaaaatgtgggctatagcttgtttcgccacacagaggcagtgcagagaagaaatattgaagggtttcacggaccagctgcgtaagatttctaaagatgcagggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcggacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagatacacttttgggtatggctacgcagtgtgtccaagtcaagaatgtaataaaaacatcccctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaacccgtgatctttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcttccatggttcgagaacttctcattcaattttataagtcaactcggttcaaacctactcgtatcatcttttatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcgattgttttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagccgtccttcacactatcatgttttatgggacgataactgctttactgcagatgaacttcagctgctgacttaccagctctgccacacttacgtgcgctgtacacgatctgtttctatacctgcaccagcgtattatgctcacctggtagcgttcagagccagataccatctcgtggacaaagaacatgacagtgctgaaggaagtcatgtttcaggacagagcaatggacgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaagtccaagaatattctctgagaggaagaattgaaaagatgcatcgacatagagcgtatgtttccagtggagtcagttgagtgggaatgcctccagccatacagcaaccaacactgtgtggggaccagggtctgatttttatgttaatataaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttttgtgcggtctccttaggaagtatcgccattgttttgttttcactttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtacagaaaaagtaaatgacggtttaaaaaaaaaacacacaccttacatgaataatcaaagtgattgttcacaattatgtgtgcaaaaaaattagtgtgcattcgtgtattcttgtgaaaggtatctgtgtatattttaaatatatacatgtatacttcatatgcatatatatctggatctacactgacagtagatatatatgtgtctgtgtgtgtattttatagttcattccatcgggaaactttctttcccttttatcatcctcccaccaccactttgatttctctctacctccctcgccttcatcacctacatttttttttcctgatgctaccagtgacattcagatgttcgtgtatctggttcatttggatatgaagcatggcaaactagagttttatttttattttgcacaccctactcctgtctcttgtctcatacacagttctaagtcctcaactcttgatattgctttcttaaacaaaattattatatatatacacacacgtatatgtatgtatatatatatgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatacgtatatatatatatatgaagtttctatgagagtgtctgcccactcctgctctgaacttaacatttgccatttgtgcaatgtgtatataagcagtagcaatcttaaactattatttttctttagtttgttaaagctgctataaatataaaactttgtcagaagttgtaactcagaaatttctctataactgatatgtattctaaagctttctgttgctatgggttatacatgaaaatcccttacagctttcataaagggcaaatattttaaatgattgaaactctttagggttgaggcctctgaaattgggtggagagagagaaggggttgctgagggtttttttttattttaaattttttttttttttgctagtttacttgttgcctctcatacctta
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@meso_cacase at
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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