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2020-02-27 20:54:03, GGRNA.v2 : RefSeq release 98 (Jan, 2020)

LOCUS       XM_029597781            5315 bp    mRNA    linear   VRT 28-JUN-2019
DEFINITION  PREDICTED: Rhinatrema bivittatum NRDE-2, necessary for RNA
            interference, domain containing (NRDE2), transcript variant X2,
            mRNA.
ACCESSION   XM_029597781
VERSION     XM_029597781.1
DBLINK      BioProject: PRJNA549481
KEYWORDS    RefSeq.
SOURCE      Rhinatrema bivittatum (two-lined caecilian)
  ORGANISM  Rhinatrema bivittatum
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Gymnophiona; Rhinatrematidae; Rhinatrema.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042618.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Rhinatrema bivittatum Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5315
                     /organism="Rhinatrema bivittatum"
                     /mol_type="mRNA"
                     /db_xref="taxon:194408"
                     /chromosome="4"
     gene            1..5315
                     /gene="NRDE2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 8 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:115089646"
     CDS             75..3545
                     /gene="NRDE2"
                     /codon_start=1
                     /product="protein NRDE2 homolog isoform X2"
                     /protein_id="XP_029453641.1"
                     /db_xref="GeneID:115089646"
                     /translation="
MALFPAFEGSAGDTQTVGDGAKRGAELDWLSNRSFHSTEAETLHRRILQPEDPASAPSLLSRSPLRSDVTEESVADEGTKKSSKKKKKKHKHLKRKKTRKTDSRNSESSSETEPVKDKAGEQERGAQKPGQSIEISDTVKRHLVWLEDIQSVTGEAFRIDKNPDPANWEYKSIYRAHIARYKRKGNSCLGINPKKQWISWEDSGTEKKQLIKRAERYFTKSGVRLLATDGIPVCSRTQATLLCDPALIPLQEGGEGEKAAWVNPLGVYDASTTLWLQGKGVPESEAKQPPSREDLNHTLKAKVEEFNRKLRESPGDVQAWMAFVDFQDELLKGPSMYTTNERELESGRKSLRLVLEKKLCILERAIESNPHHVELKLARLKLCEEFWEPAALLKEWQKLVFLHPNNAALWQKYLLFSQSQFSTFSVSKVISLYGKCLSTLAAVQDGSMVSHPVLAGTEEAMFAIFLQQCHFLRQAGQSEKAVALFQAMSDFTFFKPDSLRDVPTKRQVEFFEPFWDSGEPRFGERGAKGWNSWMRQQERGGWVVLHDDKEEEEDDVEDEPEIEDKTRPKWQIWLEMECAREAKHWLPWRPSKAGGQSEEDCEDPERQVVFDELGPSLFRISSPELKFQLMDAFLQFLGVPCGHWLPASGLYLAMDENSVFDSGHPSGRPLTPADCPLSGLGTLGHMATLARGRRQVGHAKEGEEFLQSIFQLALTCFSGEEKSHFSVCWLQYEISKAIWYLRVKNKKNLKSQGKKSKKLAKRLLKEVENRNSLPLWREYARLEWLLGNADDSRKVFDTAISLAGSGGLKSAGLCSLCLLYAELEVGLLTSLEGTVSSRAVHVLTKLADSAPYVPYNGQVLSVGVLKARKVYEHAVRDCLQEGCVGGHSMSLDHLVSLVGCFALFQYLTVGVEAAVQVFGLFTDKASGVSVQKAGGPSDGNLETRSSPTALETLSLMHANLLRYHLRVGVHPLSSLRETLTGALRLYPGNQLLWKSYVEVESKLHNASKARKFFDNMRRSSTCLEPWLFAIQAEQARKKLVETVQRQDIGAIHATIPETGLTNRIKALFEHAVRSQQGAHCPLLWRMYLHFMVSSGEKEGGKGLFYKALQSCPWAKVLYMDAIDYFPDQLQEILDLMVEKELRVRVPLEELELLLED"
ORIGIN      
ggcagtgacgttttttgccctgcgacggtgatgggctgaacgtaagcgttgggagttggagggtggccgcggctatggctctgttcccggcctttgaggggtccgcaggtgatactcaaaccgtcggcgacggcgcaaagagaggtgcagagttggactggctgagtaaccgaagtttccacagcaccgaagcagaaacgctgcaccggcggatcctgcagcctgaggaccctgcatctgccccatctcttctctccaggagtcctttgagatccgatgtgacagaagaaagcgttgcagatgaagggaccaaaaaatcaagcaagaagaagaaaaagaaacacaagcatctcaagagaaaaaagacgaggaagacagattctaggaacagtgaatcgagctcggagacagagcctgtgaaggacaaggcaggggagcaggaaagaggagcccagaaaccaggacagagcattgaaatatcagacaccgttaaaaggcacttggtttggctcgaggatattcagtcggtgaccggagaggccttcagaattgataagaatcctgatcctgcaaactgggagtacaagtccatctaccgagcacatatagcaaggtacaaaaggaaagggaactcctgtcttggtattaatccaaagaagcaatggataagttgggaggactctggcactgaaaagaaacagctcatcaagcgagcggagcgctacttcaccaaaagcggggtgcggttactcgccacggacgggatcccagtctgcagcagaacccaggccaccctcctctgtgaccctgctctcatacccctccaggaagggggcgagggtgagaaggcggcctgggtcaatcctctcggagtttacgatgcgtccaccacgctgtggctccaaggaaagggggttcccgagagtgaggccaagcagccgccgtcccgcgaggacctgaaccacaccctgaaggcaaaggtggaggagttcaaccgcaagctgagggagagtcccggggatgtccaggcttggatggcgtttgtcgatttccaggacgaactgctgaaaggacccagtatgtacaccaccaacgagcgagagctcgaaagcggaaggaagtcgctgaggctcgtcttggagaaaaagctctgcatcctggagagggccatcgagagcaatccacaccacgtggagctgaagctggccaggctgaagctgtgcgaggagttttgggagcccgccgctctgctgaaagagtggcagaagctggttttcctgcatcccaataatgccgcgctctggcagaagtatctcctcttttcccaaagccagttcagcaccttttccgtgtccaaagtcatcagcttgtacgggaaatgcctgagcaccctggcagcagtgcaggacggcagcatggtgtcccaccctgtgctggcgggcacagaggaggccatgttcgccatcttcctgcaacagtgccatttcctgcgccaggcgggccagtccgagaaagccgtcgctctcttccaggccatgagcgacttcacctttttcaaaccggacagcctcagagacgtgccgacgaagaggcaggtggagttcttcgaacccttctgggacagcggggagcctcggtttggggagagaggagccaaaggctggaactcctggatgcgtcagcaagaaaggggaggctgggttgtgctccacgatgataaggaggaggaggaagatgacgtagaggatgagccagaaatagaggataaaacgcgtccaaaatggcagatctggctggagatggagtgtgcacgcgaagccaagcactggctgccctggagacccagcaaagccggtggccagtcggaagaggactgcgaggacccagagagacaggtggtgtttgatgaactgggcccatctttattcaggatttccagccccgagctgaaatttcagctgatggacgcattcctgcagtttttgggggttccatgtggacactggctccctgcttccggcttgtacctcgccatggatgagaactctgtctttgatagcgggcacccttctgggaggccgctgacccctgctgactgccccctctctggactcggcactctgggccacatggccacactggccagggggagacggcaggtgggccatgctaaggaaggggaggagttcttacagagcatcttccagctggcgctgacttgcttctcgggagaggagaagtctcatttctcagtctgttggttacagtatgaaatatccaaggccatttggtatttacgagtgaaaaacaagaagaacctgaagtctcaggggaaaaagagcaaaaagctagccaaacgcctccttaaggaagtggagaaccgaaacagtcttcccctctggagagagtatgcccgcctggagtggctgctgggaaacgcggatgattcccgtaaggttttcgatacagccatcagcctggcagggagcggtgggctgaagagcgctgggctgtgcagcctgtgcctgctttatgctgaactggaagtgggcctgctgacgagcctggaaggaacagtcagctcccgcgctgtccacgtcctgaccaagctcgccgatagcgcgccgtacgtcccctacaacgggcaggttttatcggtcggcgttttgaaagctcggaaggtgtacgagcacgcagtgcgtgactgcctccaggaaggctgcgtcggtggccacagcatgtcccttgaccaccttgtgagcttggtgggttgttttgccctcttccagtatttgactgtgggggttgaagctgcggttcaggttttcggactttttaccgataaagctagtggtgttagcgtgcagaaagctggaggacctagtgatgggaacctggaaactcggagttcgccgactgcacttgaaaccctctctctgatgcatgcaaatttgctcaggtatcacctcagagttggcgtgcatcccttgagttcgctgagagagacccttacgggggctctgaggttgtatcctggcaaccagttgctctggaagtcctatgtggaagtggaaagtaaattgcacaatgctagtaaagcaaggaaatttttcgacaacatgagaagatcctccacatgccttgaaccatggctctttgcgatccaggcagagcaagctagaaaaaagcttgtggagacagttcagaggcaagacataggagcgatccatgcaacaatccctgagacaggattgacaaaccggatcaaagcgttattcgaacacgccgtccgaagccaacagggagctcactgcccgctgttgtggaggatgtatttgcactttatggtttcatcgggcgagaaggaaggcggtaaagggctgttttataaagcacttcagagctgtccctgggccaaggtgctgtacatggatgccatcgactacttcccggatcagctccaggagatcctggatctgatggtggagaaggaactgcgggtccgcgtgcctctggaagagctggagctgctgctggaagactgagccgcttcagctccggacacgggctcgggtcgccaaggaatccgccaaacgccgagcgattcagaaacagagaggaatcttgcagaatggatagaaaatgtggtttttgcaataggtgatccctgttgtagaaaaaggcaggagcacaaggtatccggaaggctctgcagtctggccttctacaaagtgcctgcctgtcgggacaaatgtgctaaccagacggagagggaacgaatggcgtagcagggcctgatgtgcatttccattctttaccttatgctctgcccttaggcttttttttttttaatatatactttatttttttgagggtctcaagcgggtatccagcattctacagtgttccagagcggttgtcattaaagcaaaacgtgacacagtttaatctattcatactcctaatatatcgcctttctaggttaatcagaggtttaccataaaacggtcagatatatcaatcataataagttatatataaagccacaacataaaaaaaaaatagccccacccaagaccgttaactctacgtaaaatagttttcattcatcaattcaagtcaaataaatcacaatctaataaaatcaacacccaccgtaaagcacaaatgagacaccgcgatggaacagaacataagaacataatatacacacacggaagaaattcagtaataaaacacaacagaaaccctgtggcctaaatttggagctccataacagggaacatcttctccatgcccatgtacctcttgcgttaaaactgaatcaattaaaacactttaaatctgagggaaatgaatagagagaaaaatagaaatagaacaggttcctcctgtatctggtccttcctcccttttcttcagttaccctcagccctcccagaatttctcctgtccttagtcctctgagctctgccagctcctcctgcacggtgccctgcactatctaagggttctgcctcttctaccacagagctgaaatggtgctttaaatttaaaaaaaacccacatcactgcagcttccagattgcttaattctaaagaagccaggatgcaccggtttcatgtgtgagtatgataaatcacacgcatggcacatccctccagataacgcaagcgtttgcagcatcggctcgcagcagacaaaaatctgtctgtgatggcgaaccatctgctgccacctgcgaggcttgaactccccatttcagtgtgagcatgggtgtgggggatcagcacaaaagcatgtactggtcagggcagtgagcttccctgggacatgatggatgcggtaatacagtggcttccgggtcaagcttttttttttttatgcggagaggatgtgtgcaaagtctcttctaggagtaacctccggtctctgttataaaatagaattgtagttcttacactgcatttacgttcacttcctaactgcattgggggtattctctgcctctcctgcagtaaatctgtctgctcattcaatgtatatatttttacatacgacttaaaacagtttttctggaatttggctatatattcatcttgcagcattttaaattctctaatgccaggtgtactgcactttgttgaaatgtgcataatttttgaatgagctatgttggatgatgtaaaaaaacacacagctgtaaatagtatttatatattgaattgtaaaaacatattaaggtttatcagccttccaattttttattctgtattttattgtatatataaaataaagaatacaccttaaatga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]