2024-03-29 13:42:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029504408 11284 bp mRNA linear VRT 16-JUN-2019 DEFINITION PREDICTED: Echeneis naucrates protein argonaute-3 (LOC115044990), transcript variant X1, mRNA. ACCESSION XM_029504408 VERSION XM_029504408.1 DBLINK BioProject: PRJNA548465 KEYWORDS RefSeq. SOURCE Echeneis naucrates (live sharksucker) ORGANISM Echeneis naucrates Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_042516.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Echeneis naucrates Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..11284 /organism="Echeneis naucrates" /mol_type="mRNA" /db_xref="taxon:173247" /chromosome="6" gene 1..11284 /gene="LOC115044990" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:115044990" CDS 812..3415 /gene="LOC115044990" /codon_start=1 /product="protein argonaute-3 isoform X1" /protein_id="XP_029360268.1" /db_xref="GeneID:115044990" /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRVSTEHFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 1028..1312 /gene="LOC115044990" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1340..1492 /gene="LOC115044990" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1493..1855 /gene="LOC115044990" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1649..1651,1694..1696,1736..1738,1748..1750, 1802..1804,1823..1825,1829..1831) /gene="LOC115044990" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1988..3286 /gene="LOC115044990" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2420..2422,2432..2434,2468..2479,2486..2488, 2510..2512,2519..2521,2531..2533,2543..2545) /gene="LOC115044990" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2624..2626,2630..2632,2840..2842,3254..3256) /gene="LOC115044990" /note="active site" /db_xref="CDD:240015" ORIGIN
ttcaccatatttagctggctcgccgaaaagcctcgcatagagttgatctgtcaaccaggctgaaaaatcctgacacttctcggcggatacccaccagcctccccccccgccccccatcccccggcgttgacagttttattttgacgccggggagcagactacgggggacgacgtcgtcggcgcgggcagcttcgaggagcggggccgagtcggcggcggtttttaaggcgactgaagtctccgtcgtctgtcagaattccaactatccaaccgccgagctaacggctagctaatcacattagctaaccccgacgcccgctcggacagaagacgcggatttatgtaatctcttttcaccttcacccgtcggtggggattcgtccggactcggtgaccccggtgggatgatatcctgacagctcctctcctccgtttccggacacttttccgagcctggctagcgagctaacttggctaactagcaggttttcgctggcagtacgtcgcgtcgcggagccagtagctttcgcagtggcagtgagaaagccgattggatacgttgacggtggggacacagaagaacccggccggcgaaacgaccgtaccgaaggggccttttgtgggtttttatttattttaatttttttgacagttcacagggagggggggtccaaacagagaccagggaaccccgccgctcagccccgtaaaggaggcgcacggctgaaggagacaccggattgaacggaggtagagaccccaacgtttgacaactgtgatccgggtagagaaccgggcagggacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgccacggcggcctggctatggcaccatggggaagcccatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctttacgaagtggatatcaagcctgacaagtgtccacgacgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccggtctacgatggaaagaagagtttgtatacagccaacccactgcctgtggcacctactggggtggacctggatgtcaccctaccaggtgagggaggaaaagatcgtcccttcaaagtctccatcaaatttgtgtctctggtcagctggcacatgctccatgaggtgctgactggacgcagcatgcctgagcctctggaactggacaagcccatcagcaccaaccctgtgcacgcagtggatgtagttctgcgacatctgccctcaatgaagtacacaccagtgggccgatccttcttctctgctccagagggctacgaccaccccctgggaggtggaagggaggtttggtttggtttccatcagtctgtacgacctgccatgtggaagatgatgcttaacattgatgtttccgccactgcattctacaaagcccagcccgtcatccagttcatgtgtgaagtgctggacatccacaacatagatgagcagcctcgccctctcactgactcacacagggtcaaattcaccaaagaaatcaaaggtttgaaagtagaggtgacgcactgtggaaccatgcggaggaagtatcgtgtctgcaacgtgacccgccgacccgccagccaccaaacgttccctctgcaattggagaacggccagaccgtagagcgtactgtagcccagtacttcagagagaagtacaacctgcagcttaagtacccacatttgccctgtttacaagtgggccaggagcaaaaacacacctacctgcccctggaggtgtgtaacattgtagctggtcaacgatgcatcaagaagctaacagataatcagacctccactatgatcaaagccaccgctcgctctgcacctgacaggcaggaggagatcagcaggctggtgcgtagtgccaactatgaggctgacccatttgtgcaagaattccagttcaaggtgcgcgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcagggtgagcacagagcactttatgaaccgcactgtagccacgcccagccatggggtgtgggacatgagagggaagcagttccacaccggggtggagatcaagatgtgggccatcgcctgcttcgccacacagaggcagtgtcgggaagagatcctaaagggtttcacagaccagctacgtaaaatttctaaggatgctgggatgccgatccaaggccagccatgtttttgtaaatatgcccagggagcagacagtgtggagcccatgttcagacacctgaagaacacctatgctggactacagctcatcatcgtcattctgccgggaaagactcctgtctacgcggaggtaaagcgtgtgggagacaccctcttgggcatggccacccagtgcgttcaggtgaaaaatgtggtgaagacctcacctcaaactctttccaacctttgcctcaagatcaatgtgaagctgggaggcatcaacaacatcctggtgcctcatcaacgaccctcagtgtttcagcagccagtgattttcttgggagctgatgttacacatccacctgctggagatgggaagaagccttcaatagcagcggtggtaggcagtatggacgcccaccccagcaggtactgtgccactgtgcgggttcagagacctaggcaggaggtcatccaggacctggcatccatggtgcgagagttgctcatccagttctacaagtcaacccgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgtgaggcctgtatcagcctggagaaggagtaccaaccaggcatcacctacattgttgtccaaaaacgccaccatacacgcctcttctgtgctgaccgcaacgaaagggttggacgtagtggaaacattcctgctggtactactgtggatacggacatcacacatccctatgaatttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactaccatgtactgtgggatgacaattgttttaccgctgatgagttccagctgcttacttaccagttgtgccacacatacgtgcgctgtacccgctcagtctccatccctgcgccagcctactacgcccacctggtagctttccgtgcccgctaccatctggtggacaaagaacatgacagcgctgagggcagccatgtgtctggtcagagtaatggtcgggacccacaggcgctggccaaagctgttcagattcaccacgacaccctgaggaccatgtacttcgcctgagctacaccaaccctcccccaatcatcgccacccttaacacacatacaaacacatacagacgcaaccatgcacgcctggcttgccagtcaaggagtcctcacaggtgcaagtcctgcccccccacacgcctagtcaatccggacctgacactgtgcagagggaagcagggaggagggaggggaggaggcacccccacactggactgaggatgcaaacgctgctttaaaaacaaacaagagagaaactcagcaatattatgcaatattaaaccagccaactagtttattttcaccctcatcaggcccctagtcactgccccttctatctggtttctcctgtttgtctcctttacttgtggcctagtgggtgtttttcttgtttgtttttacttttcccctcccttggcacagtctgtctttatgatccattaatctgctcctttgccatctacagtacctcaagtcagtttgagcagcagcacttttacattcggttggttttactgtagtttttctcaagtctccccagtgtttgaaacaaaggagcagagaagaagggtcagcacttggagccggtcagtgaggtttcatttcttttggaatatccttgtttcattggaccagaggtccattgagttgccacttttctttttccttctttcctcttgtctcctctttactgtcaattttcactagcataagaaattaccagttacatgtatggagcaacatgttcctttgagcacactgccacctgttggcaacgaggtataaatgcccccttaaagtcacaacaagttgatgtattaggttgtaaatctgttttgattgattgatctcaagcagtcagctgtcacatttcaatgggggcagtttatattggctgatatatcaatcgttcatttgcagccatcttttaattttatttaaagtataacactgttatttgattatggttgttatatttccctcaacattatgtgaaatattttatgactaacttttaacatttaaaaaaaaaatcacttaatcatgtaatcttatttttttcaatcttattagttgtcatgcattcatttctctcagtgctttatttcacatttccctctcttgagtttgagatggcagtttaacaaaatcaggtcgatggtttcctttagtgcaataattagttgaacgaagggaagaggattttaggggacttgaacaacccagaataacagttaaacttttcattttgaaacaaaagtcctcccaaggagaaatatttgccgcttgcaaagtgtttttatgcgctcctcctctgcaggatgattggtctgcgtgtcatgtaaattgtcccttgcttttgggcaaaaactgtgcaactgcagttctcggatttttcatgtttttacttgaattgatggagtttatgcacctcttgtttgaaaatattttatcaacagagggcataatttcaaaattcctgattcatagtttgctaatgtggctgattttcttaattgtttggaattgctcattttggagaacaaagcttattacctgacagcagcaaagtggagtctaaaggccataaataggaagtattcaagtgcctggtggaagtcgaagtatttaatggtcaaaagctgcataacttgttatagggatcctgtttcagagggtaaacgaatgatgttccaacaaatggacagcttaaggtagataaaagcaagaaagtttcacctgatgcctcttattcttctcaataaccatctactgacttttctatacatctcattcagatcatcctaagatcaatatatttattatgtttgcctatacagcattgttagctgttagctttgcttcagagcagcagcaaagcaggccaagttgtcttttacttaatatttaccagatatggattcagctgctacagtgtgtttgtacctaacgggccgggttcatgggcacggagtcagcctcgtaataaaataatactctcaataaactcgttctgctagtaaatatccaagtccaggaccaggtgcaattcctgtccatgtaaccggcccaaatcggggactgtcttcagaacagagccgaggagtggagtggatgaccttcaattgcagcagcaagtacagctgatagttgatttgaaacattcatctggatcacagtcaccacttagctcctctgtgccactgagggtctgaaacacgtccgtgggggggggggggggggggggggttgtttttaaaagtaatctgcactaaaagaagcatgtgtttcggggttgaacacaggcgtggtgctactcattttgaattagaatctgaagtgaacctctttatgagatgatatatgagcaggtgggtaggataggaaactgtaaacctcactcattgaaggaaaggagaaggtcccactgctgcagttggtgcgagaagctctagatttcggatttcactctgtgtctgttttggtcagcgttgagaatctgtaaatggtacattgacagatgttcccttggactgcgaagaataatgtagagtcctatatccgctgtcacatttgactgcctctcacaggccagccttccagtgtggaagccagtgggtttgagccttcatgatatcactagtgtctgaaagcctttttaaaaagccagatcgaaagtatatttgtacattttgaattatgtaatgcacaccacttatttttgctaacaaaaaaaaattgtagtctaattattaatcttagtcataaatgtatcataagtaatggttaaaaagttataataacaaagttttattattgcgatagactgttgacttgttcttgtatcactgtataacgtatagtgtatgtgtgaacagtggtggggttgttaaaactagtgatgtgtgttcggactgtcatactgttatcgatagggatgtggacgcctcttgctttgatgtttggaaaaaaaaaatagctgcaaaatgtcgaatgcctatttctctctcttttttgtttgtttttctttaagaaagtacagttgaggagtttgtcatagaagagaaaatctctagagggaaatcattaacatactgcactccaaaagcctttgtattaagacattacatccttattgtgaagacaaaacagtagaatagaagaagagtcagttgatgtatcgagtttctgctcatgaatgttctccggtttactgcaattggtgctgacgcctgctctttatcaagagggagagtaaaaaaggaatgggcaagtgttgttgaaagtgtcgttgatccatttcattggcacgtgatcaaagaatatcctcacaaggggtagaagctctccattcctttgtgttaaagcctccggggatttacgttgggttgcaacctctgttgcttccctgagactcctctcctttccgagcctcgacatgcactcacaaatacaaagagtcggcctcctggtaatgtgtggtgtgacaaagcctgtaatcttattgttgctctctttaccctttgctccccgaacattgactcccctgtgtcggaggactacattccacggccgtacaatcccatccgattcccctgggaggcattaaaaaaaaaaaaaaaaagattagagctgaaggacaacgtagcgaggtattgtgggttctgtgattaattcagttctgtgcgtgttggaaagaaataattgctgatcagtgatagatttgtcagtatttggcaggttatcattggaggtttaaaagtcactgctgtctgtaatggatgttcagttttgtgtataaaccacactcttgagggcagttgaacacatgtttacatagcagatgtgtttgcctagcgtacaattgaaatgtcatcagctccgctttgcaaatattaggtagtggaaagtgacctaacacgagtaaaatcatttggggtctatggaagtgaatgctcaaagggataaaaagacttatttatttggccaatttctcctctacagacgtctgtgtcacataagaagggggaaaatcttgtttgtccctctagttctattaaaatgacttgttggtttccttggaaatgaaaggtacgctcagttctcagcttgcgacggcctttggctctgaattgatatttttaaacaatacagacaaatctttttttttttttttcccttaatggaggaatacacatcttacccatgaagtgaatagtctggtggcgaaaaataccaaaatgaacttcaaaagaaatgtcgtcgtccccgccccccccccccgtttttttttgtttttttttaatcaaagcagaaatgtacatttttgagtaatcgatcaatatccctgattttttttgttgctccctatttgcagtggaaggtagcaatggagtgagaaaaaaaagtccacagaaagtgcctttcctcttgatggtgctgtaaactgaaagataaaaatgtataatcaaacaaaatagaatctccttgtcaagaacacattgcagtgcaggaacggctgcattttacacacactcactttaaatgtttgttttatagagatggcaatgcaaacttgtgtatctagacagtaagcttaaatagaaacagaatattacgccaagtatatggttgtggttgagctttcgcttcctagtgcatttagtgtcttggaccaatggtgtcgttggtacagtagaatgtgcgttggggtgtttgggggtcatagctgacgctagtgtggtgtgacatagcccggcccacgaatgacaaacatagcacagcactttagagactgccactctcacttagacacatagccaagaggtttcgatctctgtccctccagtccccttcttcctcctccaggaggaggacgagaggatccagacctcagcgtgaaaaacgaggagtcgaagaaatgtgtgttaccaaacgaagcagtcggtcattaaaagtgtgcctcatgctctcgtgactttgttgttggctcggttgagtcagcctgctctcgggtggcagttgtccctctggaacagccactcaacactttgttacagttagggctgggtgtcaaaacaggatattggtacctctcaaatttccaaagcatcccaaagtttaaaaaaaaaaggaggaaaaaaaagtggtccagaactttttacatagtcgatttttgcactgtggaggcaatgttttcttcttgaagggcatttttacaaagaaagcaacacagcaggatctaaacatgtcttacgagacagagaaaaggcatcggtgatagaaaatattttagtctgtcacacagggacgcatgctttcatcaatatgtcatcttacagcaggtatagagatgaaatcaacagaaccagtgtcagtattgaaattctcacgatgcccagccctactaacagctcatggcattctgtcatcgtagtgcaatgccctgccatgtgtcttgtccctgaagagggaatgtgtgcccagtagtatccctgtcttgagccggtagggtgtcgactgaaaaccgatggtggtctgtagttctgtgggtactttttcagtccagggggtgaaatctttatattacaagagatctgaaaaaacactgcacctcacttaccttggtatgctgcatatgttatactacatgaaagaaaactgcaaattgcttttattatgacatataatgcttgagtaatgcctgattgcgatattcttatacagtaactattttagagtcaaaataaatataactgttaaaaaaaatctctgttttgtcttaacacttatccaattttgaaaacttgttcttgagccgacttttattttgttgtcctatttaaatgtgttgttctttaaatatatatgagaaatatatatatgcggaatattttatggtgtatttattgagtgcatttaagcggctggagtctccgcatcacattgcaacatggtggggatggagccaggaggatgaggcctttagcccctccccctccacgttgacgccttattctcctagacacgcaagcacaacaatatggaggggggtacaaggtggaggaaaagtaggggggtggatttgactttgttaaaaagcagcgtgttgggctctggttgacgatcacaggccaactccccctcctccttttcttaacttttctttaccctccactcttcttttaccacatgagaaggccaaaagccaacccccacatgttgcagctcatctctgatgaagggaaccattactgaaccacactgacttgagtgtcgaatagctgacttttttttttttttttttccccccatcccaagctgctaactggtacgttagccatttaaattccctgagccagtatggggtgagcattaagtagaaaaaaaaaaaaaaaacaaagaactgcggggaaggtagaaaatatgtcggaaaggctgaattcttatggattatggtggaaatattagtgtaggcgtcacttttttttgcctcttaaattgtctcctgtcaatttttttttgtttgtttgtttggttttttcagttgtttttttgttgttgttgtttgttgtttttcttgtgccagaacattttacaccaggaacaggtctcattccgcaagaaaagacatgcctcagccttaagtgcgttcttaattgtcagatttctatgtgactttgcaaagtccgtgttgggtgacctaccaagaaaagaagcctatgtacttgatctgcccggcatcttcgtcacttcgcacgtctcatgtaaaccactaacgttgctacagaaactcgtgaactctgatgtgtgaacaagtggaagcttttgagaattgctctgtcccatttgtactgatgtcagagcagaaccaggtctgggtcaaaccgtgtttggaagccattattggcacttaacaagatgattcagatatcagcttatgaatccagaaggacgggaaaatgtgccacttccatgtgctgttgtaatttgattgggtacactactgtcaataattgcaaatccaaagagcagaatattcagatacagtttgacaggaccttgggggctccccgtcgtgctggattacagagacctgtgcctgtataatgaaccaaggatgaattgtgttgtgatgaattgctgttcatttctttttttttttttaagtcctcttattttctcctgttggtcgtccttcatcccatcggagacatcagagacatggagcctttgagtgttgtcagtcctgttccaaagcaaataggcccttttccccattacaccaaatacatgttggttaataaatgtttactgtcatgtttactcccgtggctatcagattgtttaacctgttttcatcccattagcattccaataacaatgacgaaccaaatgttgcaaaagagatcgggctcctgatgctattctttttgcccttttacacacagaatggttttgaaggctgaaacttcacagtggccaaggaatttgtttttatttttttttttgtgttgtgctgatctttcagactttcactatgtttaatattttttttttttttttttgtatatgtagcatcactcttttgtcagtcttattacaaatctaaagaccttgggctctgacacctctgagtgaggcaccagcaaacaggtataaatgctgaacagtgaaccgtcaccaccagatgatccatgtctcagtctacatccggctacgttacaacggctcttttgtagcgtcagctcgattcctttcagttttaaatgtctttcttttgtaactctcttacaggatgttggccttttagtgttgctttgcttcagtttgaagtgtatctttgactaatacttgcaataaaatgctttgctttaccttg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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