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2024-03-29 13:42:21, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_029504408           11284 bp    mRNA    linear   VRT 16-JUN-2019
DEFINITION  PREDICTED: Echeneis naucrates protein argonaute-3 (LOC115044990),
            transcript variant X1, mRNA.
ACCESSION   XM_029504408
VERSION     XM_029504408.1
DBLINK      BioProject: PRJNA548465
KEYWORDS    RefSeq.
SOURCE      Echeneis naucrates (live sharksucker)
  ORGANISM  Echeneis naucrates
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Carangaria; Carangiformes; Echeneidae; Echeneis.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_042516.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Echeneis naucrates Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.2
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11284
                     /organism="Echeneis naucrates"
                     /mol_type="mRNA"
                     /db_xref="taxon:173247"
                     /chromosome="6"
     gene            1..11284
                     /gene="LOC115044990"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 8 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 1 sample with support for all annotated introns"
                     /db_xref="GeneID:115044990"
     CDS             812..3415
                     /gene="LOC115044990"
                     /codon_start=1
                     /product="protein argonaute-3 isoform X1"
                     /protein_id="XP_029360268.1"
                     /db_xref="GeneID:115044990"
                     /translation="
MEIGTTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRVSTEHFMNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
     misc_feature    1028..1312
                     /gene="LOC115044990"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    1340..1492
                     /gene="LOC115044990"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    1493..1855
                     /gene="LOC115044990"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1649..1651,1694..1696,1736..1738,1748..1750,
                     1802..1804,1823..1825,1829..1831)
                     /gene="LOC115044990"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1988..3286
                     /gene="LOC115044990"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(2420..2422,2432..2434,2468..2479,2486..2488,
                     2510..2512,2519..2521,2531..2533,2543..2545)
                     /gene="LOC115044990"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2624..2626,2630..2632,2840..2842,3254..3256)
                     /gene="LOC115044990"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
ttcaccatatttagctggctcgccgaaaagcctcgcatagagttgatctgtcaaccaggctgaaaaatcctgacacttctcggcggatacccaccagcctccccccccgccccccatcccccggcgttgacagttttattttgacgccggggagcagactacgggggacgacgtcgtcggcgcgggcagcttcgaggagcggggccgagtcggcggcggtttttaaggcgactgaagtctccgtcgtctgtcagaattccaactatccaaccgccgagctaacggctagctaatcacattagctaaccccgacgcccgctcggacagaagacgcggatttatgtaatctcttttcaccttcacccgtcggtggggattcgtccggactcggtgaccccggtgggatgatatcctgacagctcctctcctccgtttccggacacttttccgagcctggctagcgagctaacttggctaactagcaggttttcgctggcagtacgtcgcgtcgcggagccagtagctttcgcagtggcagtgagaaagccgattggatacgttgacggtggggacacagaagaacccggccggcgaaacgaccgtaccgaaggggccttttgtgggtttttatttattttaatttttttgacagttcacagggagggggggtccaaacagagaccagggaaccccgccgctcagccccgtaaaggaggcgcacggctgaaggagacaccggattgaacggaggtagagaccccaacgtttgacaactgtgatccgggtagagaaccgggcagggacctcatgaatggaaatcggaactacaggagccgttggggcccagtccctgttctccatgccacggcggcctggctatggcaccatggggaagcccatcaagctgctggccaactgcttccaggtggagatccccaagatggatgtctacctttacgaagtggatatcaagcctgacaagtgtccacgacgagtcaacagggaggtggttgactctatggtgcagcacttcaaggtgacaatctttggggatcgcaggccggtctacgatggaaagaagagtttgtatacagccaacccactgcctgtggcacctactggggtggacctggatgtcaccctaccaggtgagggaggaaaagatcgtcccttcaaagtctccatcaaatttgtgtctctggtcagctggcacatgctccatgaggtgctgactggacgcagcatgcctgagcctctggaactggacaagcccatcagcaccaaccctgtgcacgcagtggatgtagttctgcgacatctgccctcaatgaagtacacaccagtgggccgatccttcttctctgctccagagggctacgaccaccccctgggaggtggaagggaggtttggtttggtttccatcagtctgtacgacctgccatgtggaagatgatgcttaacattgatgtttccgccactgcattctacaaagcccagcccgtcatccagttcatgtgtgaagtgctggacatccacaacatagatgagcagcctcgccctctcactgactcacacagggtcaaattcaccaaagaaatcaaaggtttgaaagtagaggtgacgcactgtggaaccatgcggaggaagtatcgtgtctgcaacgtgacccgccgacccgccagccaccaaacgttccctctgcaattggagaacggccagaccgtagagcgtactgtagcccagtacttcagagagaagtacaacctgcagcttaagtacccacatttgccctgtttacaagtgggccaggagcaaaaacacacctacctgcccctggaggtgtgtaacattgtagctggtcaacgatgcatcaagaagctaacagataatcagacctccactatgatcaaagccaccgctcgctctgcacctgacaggcaggaggagatcagcaggctggtgcgtagtgccaactatgaggctgacccatttgtgcaagaattccagttcaaggtgcgcgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcagggtgagcacagagcactttatgaaccgcactgtagccacgcccagccatggggtgtgggacatgagagggaagcagttccacaccggggtggagatcaagatgtgggccatcgcctgcttcgccacacagaggcagtgtcgggaagagatcctaaagggtttcacagaccagctacgtaaaatttctaaggatgctgggatgccgatccaaggccagccatgtttttgtaaatatgcccagggagcagacagtgtggagcccatgttcagacacctgaagaacacctatgctggactacagctcatcatcgtcattctgccgggaaagactcctgtctacgcggaggtaaagcgtgtgggagacaccctcttgggcatggccacccagtgcgttcaggtgaaaaatgtggtgaagacctcacctcaaactctttccaacctttgcctcaagatcaatgtgaagctgggaggcatcaacaacatcctggtgcctcatcaacgaccctcagtgtttcagcagccagtgattttcttgggagctgatgttacacatccacctgctggagatgggaagaagccttcaatagcagcggtggtaggcagtatggacgcccaccccagcaggtactgtgccactgtgcgggttcagagacctaggcaggaggtcatccaggacctggcatccatggtgcgagagttgctcatccagttctacaagtcaacccgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtattatgagctgctggccattcgtgaggcctgtatcagcctggagaaggagtaccaaccaggcatcacctacattgttgtccaaaaacgccaccatacacgcctcttctgtgctgaccgcaacgaaagggttggacgtagtggaaacattcctgctggtactactgtggatacggacatcacacatccctatgaatttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactaccatgtactgtgggatgacaattgttttaccgctgatgagttccagctgcttacttaccagttgtgccacacatacgtgcgctgtacccgctcagtctccatccctgcgccagcctactacgcccacctggtagctttccgtgcccgctaccatctggtggacaaagaacatgacagcgctgagggcagccatgtgtctggtcagagtaatggtcgggacccacaggcgctggccaaagctgttcagattcaccacgacaccctgaggaccatgtacttcgcctgagctacaccaaccctcccccaatcatcgccacccttaacacacatacaaacacatacagacgcaaccatgcacgcctggcttgccagtcaaggagtcctcacaggtgcaagtcctgcccccccacacgcctagtcaatccggacctgacactgtgcagagggaagcagggaggagggaggggaggaggcacccccacactggactgaggatgcaaacgctgctttaaaaacaaacaagagagaaactcagcaatattatgcaatattaaaccagccaactagtttattttcaccctcatcaggcccctagtcactgccccttctatctggtttctcctgtttgtctcctttacttgtggcctagtgggtgtttttcttgtttgtttttacttttcccctcccttggcacagtctgtctttatgatccattaatctgctcctttgccatctacagtacctcaagtcagtttgagcagcagcacttttacattcggttggttttactgtagtttttctcaagtctccccagtgtttgaaacaaaggagcagagaagaagggtcagcacttggagccggtcagtgaggtttcatttcttttggaatatccttgtttcattggaccagaggtccattgagttgccacttttctttttccttctttcctcttgtctcctctttactgtcaattttcactagcataagaaattaccagttacatgtatggagcaacatgttcctttgagcacactgccacctgttggcaacgaggtataaatgcccccttaaagtcacaacaagttgatgtattaggttgtaaatctgttttgattgattgatctcaagcagtcagctgtcacatttcaatgggggcagtttatattggctgatatatcaatcgttcatttgcagccatcttttaattttatttaaagtataacactgttatttgattatggttgttatatttccctcaacattatgtgaaatattttatgactaacttttaacatttaaaaaaaaaatcacttaatcatgtaatcttatttttttcaatcttattagttgtcatgcattcatttctctcagtgctttatttcacatttccctctcttgagtttgagatggcagtttaacaaaatcaggtcgatggtttcctttagtgcaataattagttgaacgaagggaagaggattttaggggacttgaacaacccagaataacagttaaacttttcattttgaaacaaaagtcctcccaaggagaaatatttgccgcttgcaaagtgtttttatgcgctcctcctctgcaggatgattggtctgcgtgtcatgtaaattgtcccttgcttttgggcaaaaactgtgcaactgcagttctcggatttttcatgtttttacttgaattgatggagtttatgcacctcttgtttgaaaatattttatcaacagagggcataatttcaaaattcctgattcatagtttgctaatgtggctgattttcttaattgtttggaattgctcattttggagaacaaagcttattacctgacagcagcaaagtggagtctaaaggccataaataggaagtattcaagtgcctggtggaagtcgaagtatttaatggtcaaaagctgcataacttgttatagggatcctgtttcagagggtaaacgaatgatgttccaacaaatggacagcttaaggtagataaaagcaagaaagtttcacctgatgcctcttattcttctcaataaccatctactgacttttctatacatctcattcagatcatcctaagatcaatatatttattatgtttgcctatacagcattgttagctgttagctttgcttcagagcagcagcaaagcaggccaagttgtcttttacttaatatttaccagatatggattcagctgctacagtgtgtttgtacctaacgggccgggttcatgggcacggagtcagcctcgtaataaaataatactctcaataaactcgttctgctagtaaatatccaagtccaggaccaggtgcaattcctgtccatgtaaccggcccaaatcggggactgtcttcagaacagagccgaggagtggagtggatgaccttcaattgcagcagcaagtacagctgatagttgatttgaaacattcatctggatcacagtcaccacttagctcctctgtgccactgagggtctgaaacacgtccgtgggggggggggggggggggggggttgtttttaaaagtaatctgcactaaaagaagcatgtgtttcggggttgaacacaggcgtggtgctactcattttgaattagaatctgaagtgaacctctttatgagatgatatatgagcaggtgggtaggataggaaactgtaaacctcactcattgaaggaaaggagaaggtcccactgctgcagttggtgcgagaagctctagatttcggatttcactctgtgtctgttttggtcagcgttgagaatctgtaaatggtacattgacagatgttcccttggactgcgaagaataatgtagagtcctatatccgctgtcacatttgactgcctctcacaggccagccttccagtgtggaagccagtgggtttgagccttcatgatatcactagtgtctgaaagcctttttaaaaagccagatcgaaagtatatttgtacattttgaattatgtaatgcacaccacttatttttgctaacaaaaaaaaattgtagtctaattattaatcttagtcataaatgtatcataagtaatggttaaaaagttataataacaaagttttattattgcgatagactgttgacttgttcttgtatcactgtataacgtatagtgtatgtgtgaacagtggtggggttgttaaaactagtgatgtgtgttcggactgtcatactgttatcgatagggatgtggacgcctcttgctttgatgtttggaaaaaaaaaatagctgcaaaatgtcgaatgcctatttctctctcttttttgtttgtttttctttaagaaagtacagttgaggagtttgtcatagaagagaaaatctctagagggaaatcattaacatactgcactccaaaagcctttgtattaagacattacatccttattgtgaagacaaaacagtagaatagaagaagagtcagttgatgtatcgagtttctgctcatgaatgttctccggtttactgcaattggtgctgacgcctgctctttatcaagagggagagtaaaaaaggaatgggcaagtgttgttgaaagtgtcgttgatccatttcattggcacgtgatcaaagaatatcctcacaaggggtagaagctctccattcctttgtgttaaagcctccggggatttacgttgggttgcaacctctgttgcttccctgagactcctctcctttccgagcctcgacatgcactcacaaatacaaagagtcggcctcctggtaatgtgtggtgtgacaaagcctgtaatcttattgttgctctctttaccctttgctccccgaacattgactcccctgtgtcggaggactacattccacggccgtacaatcccatccgattcccctgggaggcattaaaaaaaaaaaaaaaaagattagagctgaaggacaacgtagcgaggtattgtgggttctgtgattaattcagttctgtgcgtgttggaaagaaataattgctgatcagtgatagatttgtcagtatttggcaggttatcattggaggtttaaaagtcactgctgtctgtaatggatgttcagttttgtgtataaaccacactcttgagggcagttgaacacatgtttacatagcagatgtgtttgcctagcgtacaattgaaatgtcatcagctccgctttgcaaatattaggtagtggaaagtgacctaacacgagtaaaatcatttggggtctatggaagtgaatgctcaaagggataaaaagacttatttatttggccaatttctcctctacagacgtctgtgtcacataagaagggggaaaatcttgtttgtccctctagttctattaaaatgacttgttggtttccttggaaatgaaaggtacgctcagttctcagcttgcgacggcctttggctctgaattgatatttttaaacaatacagacaaatctttttttttttttttcccttaatggaggaatacacatcttacccatgaagtgaatagtctggtggcgaaaaataccaaaatgaacttcaaaagaaatgtcgtcgtccccgccccccccccccgtttttttttgtttttttttaatcaaagcagaaatgtacatttttgagtaatcgatcaatatccctgattttttttgttgctccctatttgcagtggaaggtagcaatggagtgagaaaaaaaagtccacagaaagtgcctttcctcttgatggtgctgtaaactgaaagataaaaatgtataatcaaacaaaatagaatctccttgtcaagaacacattgcagtgcaggaacggctgcattttacacacactcactttaaatgtttgttttatagagatggcaatgcaaacttgtgtatctagacagtaagcttaaatagaaacagaatattacgccaagtatatggttgtggttgagctttcgcttcctagtgcatttagtgtcttggaccaatggtgtcgttggtacagtagaatgtgcgttggggtgtttgggggtcatagctgacgctagtgtggtgtgacatagcccggcccacgaatgacaaacatagcacagcactttagagactgccactctcacttagacacatagccaagaggtttcgatctctgtccctccagtccccttcttcctcctccaggaggaggacgagaggatccagacctcagcgtgaaaaacgaggagtcgaagaaatgtgtgttaccaaacgaagcagtcggtcattaaaagtgtgcctcatgctctcgtgactttgttgttggctcggttgagtcagcctgctctcgggtggcagttgtccctctggaacagccactcaacactttgttacagttagggctgggtgtcaaaacaggatattggtacctctcaaatttccaaagcatcccaaagtttaaaaaaaaaaggaggaaaaaaaagtggtccagaactttttacatagtcgatttttgcactgtggaggcaatgttttcttcttgaagggcatttttacaaagaaagcaacacagcaggatctaaacatgtcttacgagacagagaaaaggcatcggtgatagaaaatattttagtctgtcacacagggacgcatgctttcatcaatatgtcatcttacagcaggtatagagatgaaatcaacagaaccagtgtcagtattgaaattctcacgatgcccagccctactaacagctcatggcattctgtcatcgtagtgcaatgccctgccatgtgtcttgtccctgaagagggaatgtgtgcccagtagtatccctgtcttgagccggtagggtgtcgactgaaaaccgatggtggtctgtagttctgtgggtactttttcagtccagggggtgaaatctttatattacaagagatctgaaaaaacactgcacctcacttaccttggtatgctgcatatgttatactacatgaaagaaaactgcaaattgcttttattatgacatataatgcttgagtaatgcctgattgcgatattcttatacagtaactattttagagtcaaaataaatataactgttaaaaaaaatctctgttttgtcttaacacttatccaattttgaaaacttgttcttgagccgacttttattttgttgtcctatttaaatgtgttgttctttaaatatatatgagaaatatatatatgcggaatattttatggtgtatttattgagtgcatttaagcggctggagtctccgcatcacattgcaacatggtggggatggagccaggaggatgaggcctttagcccctccccctccacgttgacgccttattctcctagacacgcaagcacaacaatatggaggggggtacaaggtggaggaaaagtaggggggtggatttgactttgttaaaaagcagcgtgttgggctctggttgacgatcacaggccaactccccctcctccttttcttaacttttctttaccctccactcttcttttaccacatgagaaggccaaaagccaacccccacatgttgcagctcatctctgatgaagggaaccattactgaaccacactgacttgagtgtcgaatagctgacttttttttttttttttttccccccatcccaagctgctaactggtacgttagccatttaaattccctgagccagtatggggtgagcattaagtagaaaaaaaaaaaaaaaacaaagaactgcggggaaggtagaaaatatgtcggaaaggctgaattcttatggattatggtggaaatattagtgtaggcgtcacttttttttgcctcttaaattgtctcctgtcaatttttttttgtttgtttgtttggttttttcagttgtttttttgttgttgttgtttgttgtttttcttgtgccagaacattttacaccaggaacaggtctcattccgcaagaaaagacatgcctcagccttaagtgcgttcttaattgtcagatttctatgtgactttgcaaagtccgtgttgggtgacctaccaagaaaagaagcctatgtacttgatctgcccggcatcttcgtcacttcgcacgtctcatgtaaaccactaacgttgctacagaaactcgtgaactctgatgtgtgaacaagtggaagcttttgagaattgctctgtcccatttgtactgatgtcagagcagaaccaggtctgggtcaaaccgtgtttggaagccattattggcacttaacaagatgattcagatatcagcttatgaatccagaaggacgggaaaatgtgccacttccatgtgctgttgtaatttgattgggtacactactgtcaataattgcaaatccaaagagcagaatattcagatacagtttgacaggaccttgggggctccccgtcgtgctggattacagagacctgtgcctgtataatgaaccaaggatgaattgtgttgtgatgaattgctgttcatttctttttttttttttaagtcctcttattttctcctgttggtcgtccttcatcccatcggagacatcagagacatggagcctttgagtgttgtcagtcctgttccaaagcaaataggcccttttccccattacaccaaatacatgttggttaataaatgtttactgtcatgtttactcccgtggctatcagattgtttaacctgttttcatcccattagcattccaataacaatgacgaaccaaatgttgcaaaagagatcgggctcctgatgctattctttttgcccttttacacacagaatggttttgaaggctgaaacttcacagtggccaaggaatttgtttttatttttttttttgtgttgtgctgatctttcagactttcactatgtttaatattttttttttttttttttgtatatgtagcatcactcttttgtcagtcttattacaaatctaaagaccttgggctctgacacctctgagtgaggcaccagcaaacaggtataaatgctgaacagtgaaccgtcaccaccagatgatccatgtctcagtctacatccggctacgttacaacggctcttttgtagcgtcagctcgattcctttcagttttaaatgtctttcttttgtaactctcttacaggatgttggccttttagtgttgctttgcttcagtttgaagtgtatctttgactaatacttgcaataaaatgctttgctttaccttg
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]