2024-03-29 00:25:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_029183820 6018 bp mRNA linear INV 01-FEB-2022 DEFINITION PREDICTED: Osmia bicornis bicornis protein argonaute-2 (LOC114874501), transcript variant X2, mRNA. ACCESSION XM_029183820 VERSION XM_029183820.2 DBLINK BioProject: PRJNA802130 KEYWORDS RefSeq. SOURCE Osmia bicornis bicornis ORGANISM Osmia bicornis bicornis Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Osmia. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060221) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Feb 1, 2022 this sequence version replaced XM_029183820.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Osmia bicornis bicornis Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6018 /organism="Osmia bicornis bicornis" /mol_type="mRNA" /sub_species="bicornis" /db_xref="taxon:1437191" /chromosome="6" gene 1..6018 /gene="LOC114874501" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns" /db_xref="GeneID:114874501" CDS 163..2856 /gene="LOC114874501" /codon_start=1 /product="protein argonaute-2 isoform X2" /protein_id="XP_029039653.1" /db_xref="GeneID:114874501" /translation="
MYPVGQPPPPGPTTSSSVGAAGSTGSSVVAPSSLGLVPAQQTHTPPQPPELPMFSCPRRPNIGREGRPIGLRANHFQITMPRGFVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGTLKPVFDGRNNLYTRDPLPIGTDKIELEVTLPGEGKDRVFRVVIKWVAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRHPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRVLPPPKLQYGGRVSSLSGQTKQQAMPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRNVREDALRMFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQSLQLVCVVLPGKTPVYAEVKRVGDTLLGIATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFLHVLQHELTAIREACIKLEADYKPGITFIVVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
misc_feature 361..750 /gene="LOC114874501" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 778..930 /gene="LOC114874501" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 931..1293 /gene="LOC114874501" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1087..1089,1132..1134,1174..1176,1186..1188, 1240..1242,1261..1263,1267..1269) /gene="LOC114874501" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1429..2727 /gene="LOC114874501" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1858..1860,1870..1872,1906..1917,1924..1926, 1948..1950,1957..1959,1969..1971,1981..1983) /gene="LOC114874501" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2062..2064,2068..2070,2281..2283,2695..2697) /gene="LOC114874501" /note="active site" /db_xref="CDD:240015" polyA_site 6018 /gene="LOC114874501" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ataagaccaattggagtgaagttgaaggcagccattgcaaaaggcaatctcattcgtagtgtgtgttgtggagaagtgtgttgtgtggtcagtgggttttgtgttaaattttttactgatttattagtggttatctggtctttttcatcatcagctgcaaaaatgtatcctgtagggcagcctcccccacctggacccacaacaagttcttctgtgggagcagctggatcaactgggagcagtgtcgttgctcctagctctttaggacttgttcctgcacagcagacacacactcctcctcaacctcctgaactgccaatgttttcgtgtcctcggagaccaaatataggacgtgaaggcagaccaattggtttaagagctaatcactttcaaattacaatgccacgtggttttgtgcatcattatgatattaacattcaaccagataaatgtcctcgtaaagttaatagggaaataatagaaacgatggttcatgcatatagtaaaatattcggaactcttaagcctgtgtttgatggcagaaataatttatatacgagggaccctttgcctattggtactgataaaatagaattagaagtaacactgcctggtgagggtaaagacagagtttttagagtggtgataaagtgggtggctcaagtttcattatttgctttagaagaagctctagaaggacgtacaagacaaattccatatgatgctatacttgctttagatgttgtaatgaggcatttaccatctatgacatatactcctgtaggtagatcattctttagtacaccagatggatattatcatccactaggtggtggtagagaagtatggtttggtttccatcaatctgttaggccatcacagtggaagatgatgttaaatattgatgtctctgcaactgcattttacaaagcccaacctgtcatagaatttatgtgtgaagtattagacattcgagacataaatgaacaaagaaagcctctaacagattctcaacgagttaagtttaccaaagaaattaagggactcaaaattgaaattacacattgtggaactatgagacggaaatacagagtgtgtaacgttacacgtaaacctgcccaaatgcagtcattccctttacaactagaaaatggacaaacagttgaatgcactgttgcaaagtatttcttagataaatataaaatgaagttacgtcatccgcatcttccgtgtcttcaagttggacaagagcataagcacacatatctacccctcgaggtctgtaatatcgtcgccgggcaacgctgtattaaaaaattgactgatatgcagacatccactatgataaaagctacagctcgttctgctccagatcgtgaacgagaaataaataatttagttagaagagctgattttaataatgattcgtatgttcaagaatttggtctgacaatatcaaacaatatgatggaagttaggggtcgtgttttacctccgcccaagctacaatacggagggcgtgtaagttccctcagtggacagacaaagcagcaagctatgcctaatcaaggtgtatgggacatgcgcggcaagcaatttttcacaggtgtggaaattagagtttgggcaattgcttgcttcgcgcctcaaagaaatgtacgcgaggatgcactgcgtatgtttacaacacagttacaaaaaataagcaacgatgctggaatgccaattattgggcaaccatgtttttgtaaatacgctaccgggccggatcaagtagagcccatgtttagatatttaaaatcaacatttcaatcgttacaacttgtttgcgttgtattacctgggaaaacgcctgtatatgccgaagtgaaaagagttggggacacattactgggtatagcaacgcaatgcgtacaagcaaaaaatgttaataaaacatcgccgcagacgttatccaatttgtgtctaaaaattaacgtaaaattagggggtattaatagtattctggtaccaagtatcagacctaaagtattcaatgaacctgtcatatttttgggggctgatgtaactcatcctcctgctggagataataagaaacctagcatagctgcagttgttggtagcatggatgctcatccatctcgatatgcggctactgttagggttcagcaacacagacaagaaattattcaagaactcagttcaatggtgagagaacttcttatcatgttttataaaagtaccgggggatataagccacacagaataattctttatcgtgatggtgtctcggaaggccagtttctacacgttttgcaacacgaattaactgctattcgtgaggcttgcattaaactcgaagctgattacaaacctggaataacattcatcgtagtacagaagagacatcacacccgcttattctgtgcagataaaaaggaacaaagtggaaaaagtggaaacattccagcgggtacaacggtagatgtttgtataacgcatccaactgaattcgacttttatctgtgtagtcatcaaggcatccagggcacatcacggccgtcacactatcacgttctgtgggacgataatcattttgaaagtgatgaattacaatgtcttacttatcaactttgtcacacgtatgtgagatgtacgaggtctgttagtatacctgcaccagcatattatgctcatcttgtagcattccgagccagatatcatttggtagaaaaggaacatgatagcggggaaggatctcatcaatcaggttgcagtgaagacagaacaccaggtgcaatggcaagagctattacagttcatgcagacacaaagcgagttatgtactttgcataattcttcaaaaaaattttttttttacacgagcaactgataccagataatgataatcatatcttgagcacgaatatttctagactatttaaatgctaaacaatcttcttgagtggtcaatttttttacttacttttataatcaaacgaatctgtccaatacccgagataggtcgagcaactttatattgagtttatttcctcccttttttttatattttatttaacatattgtcgaccaggtgttggataggtattctaaacattctagcgagtaggtttttaaagaggtgcttttagttaatcatgttttagattagattaaggcatacgcagcttgactgatgtgaaatttcgcgccaaaaaccatgtgaacaaacagtttaagaaaaatatcagctgccgtgcatattacgcttattttgttcttttctttttttttcctttttttttttaaatagagattaaattatctctagcatttgtatgatacaaaaaagaaaaaaaattacattacaacataaatttacgattgtataaatcgcttcttgcgaaactgttatcttgttgtttatgcgtagttatcatttaaatcaaccaatttttgtaagaagaaaaatttagacttacgggtcgtgcgattataaaaatattgacatgtactattgtcacgcttaagcatatttactattatgctcatgagactatgattctctacgatatcatattcatcatacttatatttattgtgagtactaaaaaaattggccacgtcaagtaataaattatcgatagggagatgcaaatgaataaaaggtttgtaaatgttaattgtcgaggtctctaagccaatggccaaagtaagttaagaatctgttataatgaaatccaaagttgtggcaagttgataaagcatagtgttatgtaatatctttagcgttgtaaaaaaaaaaaacatcgtgccacatttgctgaatgatatcttctgtatgacgtgtatatcaatcagtctaaatctaatgtcatcttttatgggggggggggggattatttgaaatgctttaactatcgaataaaactaaatcaagtatcttccatgtaattagtcacgattcaaagtaattaacacataactggaagatcattcttttaattgtaaatggaatgaagcatatgattgaatgcaattatctttgtacagaagtttagtattttacatttaaatagtttgatattaactgcaaactcgaaaatacatactctatttcttttagttccactgacattaacttgcacacgtgaagcaggaattatagacacctacatcaacaaagttacgatgcagcttgaactgttataataactttattcgtataagaattttgaggctttcacggctcgatttgttacagataatgtagcttgagattttcgggtgtacactgtgttcaaaagaaaagtacctccaatgttttactagcagtgcaactagcttcatcaagaatctaaaaacgcgttaatacctatgttcatcagactgtacagtctttatatagtacccacgttcatgttccagttcacggcctgctgatcaatttaaaaacagtaaaaaggtactctgaataaaattaaaacagtaaccggtatctctgttagttttgctcagggggatttcataatttctattgataaagttatctgtactcctgataaaatgttagaaatacttttcttccagacatggttcacacctgatagtcttaaacagtattcacatcaacgaaggtaaacaaattacctttatttaatgtttaaaacataaattgttatcccttcgggtaaaaatgattaaattgaatgtacatatggcattagatctgggctgatgatgaagccccatcaatgcaaaaaatgattcaaataagattagggtaaggataattcagtaattgtagtatagattagaagtataataatgaaattattaggataagttacgttttatttgttatgtaacgcaaattttaaggtccttcaacttttttaatcttaatggagttctttattcacgattcgtccgagtgatgggtgtgtatttaaaatggaacaataatcttaatcggcacagtaacagtactaagagcctttcaagcaactacaatgtagaagcaatagataggataatgaagtgtataaatatgtattgaatgtcgtgcgccataaattgtttattgcatatcgttagaatcattgatacatcgataatgtttttaacgacatccatcgttccaagcataggttgtaatcgttttattatttgatttataaagcagtattaaaaacaactaaggataaagatcgttgcatgatttaaataaaacaaaaaccaaacttataaactcttatgtaatgtatatgtatatagaactaatgagtatttcaatgatgtttcataatatatttcctttcttttttttcaatctatgaatgtgaacttaaacacagattaattttattcagatgaaaaatatatttaaatgaatgttgatcaagctggcatgtagagtttgtgtaaaattctgtattaatgattctaacatagaacttgcgagtgataaatgttaatcttatctcgaaaagtatgaaaaggaccttaatctatcaataatatttattctagttataatattaagtccgtaatgtatagggtatcgcttacagttacaacatttaatacctagtttctgactttgtgaaagaaagaaagataatgataattaggtgaaatttgttaaaacatgatttcgacgctgataaaaggtcgaagcgtaattttgtgacgttcgttaagatagatttctgtaattgaatcaattacaaaaatgatcgagggcagcggataaataaacgcaaattagcgaatgacgacggtgtagttaaagtaagagagatgaagctatgagtctttgagcaatgagagaggatacaacaaacataaaaaaaaaaaagaatttattattcgtgttgttaagggtgtaatggaaccaaaatgacggacgtgtaagaagtatagaagtgaaaaaattacgaatcaatattgaatcgtaatgaggccatacagatctattagattttaagtaaatctaaaaaaaaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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