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2024-03-29 00:25:27, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_029183820            6018 bp    mRNA    linear   INV 01-FEB-2022
DEFINITION  PREDICTED: Osmia bicornis bicornis protein argonaute-2
            (LOC114874501), transcript variant X2, mRNA.
ACCESSION   XM_029183820
VERSION     XM_029183820.2
DBLINK      BioProject: PRJNA802130
KEYWORDS    RefSeq.
SOURCE      Osmia bicornis bicornis
  ORGANISM  Osmia bicornis bicornis
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita;
            Aculeata; Apoidea; Anthophila; Megachilidae; Megachilinae; Osmia.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060221) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 1, 2022 this sequence version replaced XM_029183820.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Osmia bicornis bicornis Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 9.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6018
                     /organism="Osmia bicornis bicornis"
                     /mol_type="mRNA"
                     /sub_species="bicornis"
                     /db_xref="taxon:1437191"
                     /chromosome="6"
     gene            1..6018
                     /gene="LOC114874501"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 57 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 19 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:114874501"
     CDS             163..2856
                     /gene="LOC114874501"
                     /codon_start=1
                     /product="protein argonaute-2 isoform X2"
                     /protein_id="XP_029039653.1"
                     /db_xref="GeneID:114874501"
                     /translation="
MYPVGQPPPPGPTTSSSVGAAGSTGSSVVAPSSLGLVPAQQTHTPPQPPELPMFSCPRRPNIGREGRPIGLRANHFQITMPRGFVHHYDINIQPDKCPRKVNREIIETMVHAYSKIFGTLKPVFDGRNNLYTRDPLPIGTDKIELEVTLPGEGKDRVFRVVIKWVAQVSLFALEEALEGRTRQIPYDAILALDVVMRHLPSMTYTPVGRSFFSTPDGYYHPLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRDINEQRKPLTDSQRVKFTKEIKGLKIEITHCGTMRRKYRVCNVTRKPAQMQSFPLQLENGQTVECTVAKYFLDKYKMKLRHPHLPCLQVGQEHKHTYLPLEVCNIVAGQRCIKKLTDMQTSTMIKATARSAPDREREINNLVRRADFNNDSYVQEFGLTISNNMMEVRGRVLPPPKLQYGGRVSSLSGQTKQQAMPNQGVWDMRGKQFFTGVEIRVWAIACFAPQRNVREDALRMFTTQLQKISNDAGMPIIGQPCFCKYATGPDQVEPMFRYLKSTFQSLQLVCVVLPGKTPVYAEVKRVGDTLLGIATQCVQAKNVNKTSPQTLSNLCLKINVKLGGINSILVPSIRPKVFNEPVIFLGADVTHPPAGDNKKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIIQELSSMVRELLIMFYKSTGGYKPHRIILYRDGVSEGQFLHVLQHELTAIREACIKLEADYKPGITFIVVQKRHHTRLFCADKKEQSGKSGNIPAGTTVDVCITHPTEFDFYLCSHQGIQGTSRPSHYHVLWDDNHFESDELQCLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVEKEHDSGEGSHQSGCSEDRTPGAMARAITVHADTKRVMYFA"
     misc_feature    361..750
                     /gene="LOC114874501"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:435368"
     misc_feature    778..930
                     /gene="LOC114874501"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:430160"
     misc_feature    931..1293
                     /gene="LOC114874501"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(1087..1089,1132..1134,1174..1176,1186..1188,
                     1240..1242,1261..1263,1267..1269)
                     /gene="LOC114874501"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1429..2727
                     /gene="LOC114874501"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1858..1860,1870..1872,1906..1917,1924..1926,
                     1948..1950,1957..1959,1969..1971,1981..1983)
                     /gene="LOC114874501"
                     /note="5' RNA guide strand anchoring site [active]"
                     /db_xref="CDD:240015"
     misc_feature    order(2062..2064,2068..2070,2281..2283,2695..2697)
                     /gene="LOC114874501"
                     /note="active site"
                     /db_xref="CDD:240015"
     polyA_site      6018
                     /gene="LOC114874501"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ataagaccaattggagtgaagttgaaggcagccattgcaaaaggcaatctcattcgtagtgtgtgttgtggagaagtgtgttgtgtggtcagtgggttttgtgttaaattttttactgatttattagtggttatctggtctttttcatcatcagctgcaaaaatgtatcctgtagggcagcctcccccacctggacccacaacaagttcttctgtgggagcagctggatcaactgggagcagtgtcgttgctcctagctctttaggacttgttcctgcacagcagacacacactcctcctcaacctcctgaactgccaatgttttcgtgtcctcggagaccaaatataggacgtgaaggcagaccaattggtttaagagctaatcactttcaaattacaatgccacgtggttttgtgcatcattatgatattaacattcaaccagataaatgtcctcgtaaagttaatagggaaataatagaaacgatggttcatgcatatagtaaaatattcggaactcttaagcctgtgtttgatggcagaaataatttatatacgagggaccctttgcctattggtactgataaaatagaattagaagtaacactgcctggtgagggtaaagacagagtttttagagtggtgataaagtgggtggctcaagtttcattatttgctttagaagaagctctagaaggacgtacaagacaaattccatatgatgctatacttgctttagatgttgtaatgaggcatttaccatctatgacatatactcctgtaggtagatcattctttagtacaccagatggatattatcatccactaggtggtggtagagaagtatggtttggtttccatcaatctgttaggccatcacagtggaagatgatgttaaatattgatgtctctgcaactgcattttacaaagcccaacctgtcatagaatttatgtgtgaagtattagacattcgagacataaatgaacaaagaaagcctctaacagattctcaacgagttaagtttaccaaagaaattaagggactcaaaattgaaattacacattgtggaactatgagacggaaatacagagtgtgtaacgttacacgtaaacctgcccaaatgcagtcattccctttacaactagaaaatggacaaacagttgaatgcactgttgcaaagtatttcttagataaatataaaatgaagttacgtcatccgcatcttccgtgtcttcaagttggacaagagcataagcacacatatctacccctcgaggtctgtaatatcgtcgccgggcaacgctgtattaaaaaattgactgatatgcagacatccactatgataaaagctacagctcgttctgctccagatcgtgaacgagaaataaataatttagttagaagagctgattttaataatgattcgtatgttcaagaatttggtctgacaatatcaaacaatatgatggaagttaggggtcgtgttttacctccgcccaagctacaatacggagggcgtgtaagttccctcagtggacagacaaagcagcaagctatgcctaatcaaggtgtatgggacatgcgcggcaagcaatttttcacaggtgtggaaattagagtttgggcaattgcttgcttcgcgcctcaaagaaatgtacgcgaggatgcactgcgtatgtttacaacacagttacaaaaaataagcaacgatgctggaatgccaattattgggcaaccatgtttttgtaaatacgctaccgggccggatcaagtagagcccatgtttagatatttaaaatcaacatttcaatcgttacaacttgtttgcgttgtattacctgggaaaacgcctgtatatgccgaagtgaaaagagttggggacacattactgggtatagcaacgcaatgcgtacaagcaaaaaatgttaataaaacatcgccgcagacgttatccaatttgtgtctaaaaattaacgtaaaattagggggtattaatagtattctggtaccaagtatcagacctaaagtattcaatgaacctgtcatatttttgggggctgatgtaactcatcctcctgctggagataataagaaacctagcatagctgcagttgttggtagcatggatgctcatccatctcgatatgcggctactgttagggttcagcaacacagacaagaaattattcaagaactcagttcaatggtgagagaacttcttatcatgttttataaaagtaccgggggatataagccacacagaataattctttatcgtgatggtgtctcggaaggccagtttctacacgttttgcaacacgaattaactgctattcgtgaggcttgcattaaactcgaagctgattacaaacctggaataacattcatcgtagtacagaagagacatcacacccgcttattctgtgcagataaaaaggaacaaagtggaaaaagtggaaacattccagcgggtacaacggtagatgtttgtataacgcatccaactgaattcgacttttatctgtgtagtcatcaaggcatccagggcacatcacggccgtcacactatcacgttctgtgggacgataatcattttgaaagtgatgaattacaatgtcttacttatcaactttgtcacacgtatgtgagatgtacgaggtctgttagtatacctgcaccagcatattatgctcatcttgtagcattccgagccagatatcatttggtagaaaaggaacatgatagcggggaaggatctcatcaatcaggttgcagtgaagacagaacaccaggtgcaatggcaagagctattacagttcatgcagacacaaagcgagttatgtactttgcataattcttcaaaaaaattttttttttacacgagcaactgataccagataatgataatcatatcttgagcacgaatatttctagactatttaaatgctaaacaatcttcttgagtggtcaatttttttacttacttttataatcaaacgaatctgtccaatacccgagataggtcgagcaactttatattgagtttatttcctcccttttttttatattttatttaacatattgtcgaccaggtgttggataggtattctaaacattctagcgagtaggtttttaaagaggtgcttttagttaatcatgttttagattagattaaggcatacgcagcttgactgatgtgaaatttcgcgccaaaaaccatgtgaacaaacagtttaagaaaaatatcagctgccgtgcatattacgcttattttgttcttttctttttttttcctttttttttttaaatagagattaaattatctctagcatttgtatgatacaaaaaagaaaaaaaattacattacaacataaatttacgattgtataaatcgcttcttgcgaaactgttatcttgttgtttatgcgtagttatcatttaaatcaaccaatttttgtaagaagaaaaatttagacttacgggtcgtgcgattataaaaatattgacatgtactattgtcacgcttaagcatatttactattatgctcatgagactatgattctctacgatatcatattcatcatacttatatttattgtgagtactaaaaaaattggccacgtcaagtaataaattatcgatagggagatgcaaatgaataaaaggtttgtaaatgttaattgtcgaggtctctaagccaatggccaaagtaagttaagaatctgttataatgaaatccaaagttgtggcaagttgataaagcatagtgttatgtaatatctttagcgttgtaaaaaaaaaaaacatcgtgccacatttgctgaatgatatcttctgtatgacgtgtatatcaatcagtctaaatctaatgtcatcttttatgggggggggggggattatttgaaatgctttaactatcgaataaaactaaatcaagtatcttccatgtaattagtcacgattcaaagtaattaacacataactggaagatcattcttttaattgtaaatggaatgaagcatatgattgaatgcaattatctttgtacagaagtttagtattttacatttaaatagtttgatattaactgcaaactcgaaaatacatactctatttcttttagttccactgacattaacttgcacacgtgaagcaggaattatagacacctacatcaacaaagttacgatgcagcttgaactgttataataactttattcgtataagaattttgaggctttcacggctcgatttgttacagataatgtagcttgagattttcgggtgtacactgtgttcaaaagaaaagtacctccaatgttttactagcagtgcaactagcttcatcaagaatctaaaaacgcgttaatacctatgttcatcagactgtacagtctttatatagtacccacgttcatgttccagttcacggcctgctgatcaatttaaaaacagtaaaaaggtactctgaataaaattaaaacagtaaccggtatctctgttagttttgctcagggggatttcataatttctattgataaagttatctgtactcctgataaaatgttagaaatacttttcttccagacatggttcacacctgatagtcttaaacagtattcacatcaacgaaggtaaacaaattacctttatttaatgtttaaaacataaattgttatcccttcgggtaaaaatgattaaattgaatgtacatatggcattagatctgggctgatgatgaagccccatcaatgcaaaaaatgattcaaataagattagggtaaggataattcagtaattgtagtatagattagaagtataataatgaaattattaggataagttacgttttatttgttatgtaacgcaaattttaaggtccttcaacttttttaatcttaatggagttctttattcacgattcgtccgagtgatgggtgtgtatttaaaatggaacaataatcttaatcggcacagtaacagtactaagagcctttcaagcaactacaatgtagaagcaatagataggataatgaagtgtataaatatgtattgaatgtcgtgcgccataaattgtttattgcatatcgttagaatcattgatacatcgataatgtttttaacgacatccatcgttccaagcataggttgtaatcgttttattatttgatttataaagcagtattaaaaacaactaaggataaagatcgttgcatgatttaaataaaacaaaaaccaaacttataaactcttatgtaatgtatatgtatatagaactaatgagtatttcaatgatgtttcataatatatttcctttcttttttttcaatctatgaatgtgaacttaaacacagattaattttattcagatgaaaaatatatttaaatgaatgttgatcaagctggcatgtagagtttgtgtaaaattctgtattaatgattctaacatagaacttgcgagtgataaatgttaatcttatctcgaaaagtatgaaaaggaccttaatctatcaataatatttattctagttataatattaagtccgtaatgtatagggtatcgcttacagttacaacatttaatacctagtttctgactttgtgaaagaaagaaagataatgataattaggtgaaatttgttaaaacatgatttcgacgctgataaaaggtcgaagcgtaattttgtgacgttcgttaagatagatttctgtaattgaatcaattacaaaaatgatcgagggcagcggataaataaacgcaaattagcgaatgacgacggtgtagttaaagtaagagagatgaagctatgagtctttgagcaatgagagaggatacaacaaacataaaaaaaaaaaagaatttattattcgtgttgttaagggtgtaatggaaccaaaatgacggacgtgtaagaagtatagaagtgaaaaaattacgaatcaatattgaatcgtaatgaggccatacagatctattagattttaagtaaatctaaaaaaaaaaaaaaaaaaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]