2024-04-24 17:14:46, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_028512139 5198 bp mRNA linear MAM 07-SEP-2020 DEFINITION PREDICTED: Phyllostomus discolor argonaute RISC catalytic component 3 (AGO3), transcript variant X3, mRNA. ACCESSION XM_028512139 VERSION XM_028512139.2 DBLINK BioProject: PRJNA524358 KEYWORDS RefSeq. SOURCE Phyllostomus discolor (pale spear-nosed bat) ORGANISM Phyllostomus discolor Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Phyllostomidae; Phyllostominae; Phyllostomus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_040907.2) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 7, 2020 this sequence version replaced XM_028512139.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Phyllostomus discolor Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.5 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5198 /organism="Phyllostomus discolor" /mol_type="mRNA" /isolate="MPI-MPIP mPhyDis1" /db_xref="taxon:89673" /chromosome="5" /sex="male" /tissue_type="muscle" /country="Germany: Munich, Collected from captive colony, LMU" /collection_date="25-Oct-2016" /collected_by="Pedro Rodenas-Cuadrado, Uwe Firzlaff, Sonja Vernes" gene 1..5198 /gene="AGO3" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns" /db_xref="GeneID:114496570" CDS 159..2039 /gene="AGO3" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_028367940.1" /db_xref="GeneID:114496570" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPANHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQDEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 159..500 /gene="AGO3" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(294..296,339..341,381..383,393..395,447..449, 468..470,474..476) /gene="AGO3" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 633..1910 /gene="AGO3" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1044..1046,1056..1058,1092..1103,1110..1112, 1134..1136,1143..1145,1155..1157,1167..1169) /gene="AGO3" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1248..1250,1254..1256,1464..1466,1878..1880) /gene="AGO3" /note="active site" /db_xref="CDD:240015" ORIGIN
aaaactaatctgagaagccagttaggaggctttttcaatcactagttcaggtttcagtctacatgttacttccttgagaagcagtttttgacacccttcaccccccaagtctgatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgacattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtctgaaggttgaagtgactcattgtggaacaatgagacggaaataccgggtttgtaatgtaacaagaaggcctgccaatcatcaaaccttccctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccacaccttccctgtctgcaagtggggcaggagcagaaacacacatatctgccactagaagtttgtaatattgtggcagggcagcgatgcatcaagaagctaacagacaatcagacttccactatgatcaaagcaacagcaagatctgcaccagatagacaagacgaaattagcagattggtaagaagtgcaaattatgaaacagatccatttgttcaggagtttcaatttaaagttcgagatgaaatggcccatgtgaccggacgcgtacttccagctcctatgctccagtacggaggacggaatcggacagtagcaacaccaagccatggagtatgggacatgcgagggaaacagttccacacaggggttgaaatcaaaatgtgggctatagcttgttttgccacacagaggcagtgcagggaagaaatattgaagggtttcacagaccagctgcggaagatttccaaggatgcggggatgcccatccagggccagccttgcttctgcaaatacgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgcggaggtgaaacgtgtaggagatacacttttgggtatggctacacagtgtgttcaagtaaagaatgtaataaaaacatcccctcaaactctgtcaaacctgtgcctaaagataaatgttaaactcggagggatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatatttttgggagcagatgtcactcatccaccagctggtgatgggaagaagccttctattgctgctgttgtagggagtatggatgcccacccaagcagatactgtgctacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgagaacttctcattcaattttataagtcaacgcggttcaaacctactcgaatcatcttctatcgggatggtgtttcagagggacagtttaggcaggtattatattatgaactactagcaattcgagaagcctgcatcagtttggaaaaagactatcaacctggaataacctacattgtagttcagaagagacatcacactcggttattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacggttgacacagacattacacacccatatgagtttgatttttacctctgtagccacgcaggaatacagggtaccagccgtccttcacactatcatgttttatgggatgataactgctttactgcagatgaacttcagctgctaacttaccagctctgccacacttacgtgcgctgtacacgttctgtttctatacctgcaccagcgtattatgctcacctggtggcattcagagccagatatcatctcgtagacaaggaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatggacgcgatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaaaaatccgagagtattctctgaaaggaagaactgaaagatgaattgacatacaacgtatgtttccatggaatctgttgagtggggatgcctccagccatacagaaaccaacactgtggggaccagggtctgatttttatgttgatacaaggaagattgtttacttcatcaaggaacacagcaccattatgcaatatgaaaccagccaactgcttttctgtgcggtctcctgtaggaagtatcgccattgttttgttttcactttctatagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaagtaaagaaaaggtaaatgataatttaaaaaaaacacacctgtatgaataatcagtgattgttcataattatgtgtgtgaaaaaattaatgtgcattcatgtattcttgtaaaaagtatctgtgtatactttaagtgtatacatgtatacttcatatacatatatatctggatctaccttgataatagatatatatgttctttgtatatattttataattcattccattgggaaatttctttcccttttattgtctgctcaccaccacttttatttctcactctacctcccctgcctcatcacctacgttttttttccttaatgctaccagtgacattcaaatgtctgtgtatctgattcatttgaatatgaagcatcacaaagtagacttttattttgcacacccactcctctctcgtctcatacacaatattaagtcctcaactcttgatattactttcttgagaagcagttattttatgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttttgtgagagtctgcgtctgccacctcctgctctgaatttacatttgccacttgtgcaaggtgtgcataagcagtagcaacctattcttttttttttagtgagtttgttaaagctgctataaatataaaatcttgtcagaactataactctctctctgtaagtgatatgtattctaaagccttctgtttctgtgggttatacatggaaatcccttaaaggatttttttaaagggtaaatattttaaatgattagaactctgtagggttgagacctctgaaattggagtgagagaaagaaggagttgttcgagttaaattttttttttgctagtttacttgctgcctctcataccttaatgtgattttcatatatatatttttatatatatgcgtgtgtatatataaatatatatgtatgtattttgaagtatagcttccttttcttttatatttattagagtagtgctttaatgattatagaactgtattggcaacatgttttatagaaatataatcatgtttattttaagaactgaccacctgtttttgctattttttcgtgcaataagccgttagaaaggaaagctgtgtctgtctgacactctgccccagacagtgttggagcaggcacctccgcagttttgaaagagcagagtgatacagccttaatttcagaaggaaagtttttctttattttcaaatctaaagcaagtctgaccttgaatattaaaaataaagttgaactttgacctaaatgatcatgaatagattaaaatttagaagatatttaaattctttgaaaatgaatcatgtttatggaagaatcatactggttaggggcccattttcatttattaagatgagtcaggaaaatgtaatattttaaaaaatatttttgccaatttactaccagtgtaactttccttttaaaattagggttatggtgacaaaggaagttaggacttcagttattttaaatgagttaataactgaaatgtgggggaaagtattgcaaaatttgtttgatggatttcactttaagatattaaaaagtactataaagctgtcaaaaccaagttcaccagtaacattggattcaggggaactttgcactttgtaactcacgaaaattgcattttactcttcttttgcactggttcagagtataactattacagattgtttccagggggcattgtcgttaacctttccaaatgtcatctgttcatgaaaatgaatgggttagtttagctctgtagtttctctctcacctgtaacccactcttaactgccagttactgtattttgagcctaaaatctgagcccatgtcctccaacagttatgaaatcttttgtccctctctcagaaaactaagaaagtactgtattttgtatgtttattatattggagtgtctgaaatgcaatttacaacactgtttcaaagctctttacatgaggtaatatttgtatagtacagtatatacattttttctctcaaccctacccccttctcctccaaaaaatcctataaagcatgtattttttttttacattgaaaattcactgaatatagtagtcagcaacatgagcaagggaagaaaattgtgtgttctaggtggtaaaaactttgtttgctgtgtgcttgctcagtgtgagtaaaacatctccctttatcagagagagttacgcagattcatgtgggaaactttagggcccagtgaagaactgtagatacccctttgctatttactgctttacctaattttttttttttttttttcagttatttcgtgtcacatgcactagagtgcagcccataatttaaatgtatttgggaggacttttacaaaggaaaacaaatattttttaaatacaaagctttacctttgaagtgagttcttttttacggtttcttacagtttcaaacattattagtttagtttaaagttggttaacttgaaagagtatgtagagtatatttctattttgcttactaacaaattagtgtgtcacacttacatagaagaaacattgtacttagaattttaagataaaagagtaagaggcaagtactttttgaattttgttttaattattattgcacttctggtgtagaattcctgaccatttttattttttaaaaagatcgttctgaatgtaatggccatgaaactcaatagcgacttttctgttctgccctcactcactaactatataatcaatgctaagttttggtctgctgttgtctgtgatgtacagtatcagagtgactttaaaatgtcagttctagcaactggtataattgatgttcatg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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