LOCUS       XM_028012414            1998 bp    mRNA    linear   VRT 21-JUL-2025
DEFINITION  PREDICTED: Xiphophorus couchianus trichohyalin-like (LOC114141699),
            transcript variant X3, mRNA.
ACCESSION   XM_028012414
VERSION     XM_028012414.1
DBLINK      BioProject: PRJNA516883
KEYWORDS    RefSeq.
SOURCE      Xiphophorus couchianus (Monterrey platyfish)
  ORGANISM  Xiphophorus couchianus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes;
            Poeciliidae; Poeciliinae; Xiphophorus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_040230.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_001444195.1-RS_2025_07
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.4
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 07/17/2025
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Xiphophorus couchianus"
                     /mol_type="mRNA"
                     /isolation_source="77th inbred generation (sibling line
                     bred)"
                     /specimen_voucher="Xc77(B)"
                     /db_xref="taxon:32473"
                     /chromosome="3"
                     /sex="female"
                     /geo_loc_name="Mexico: Nuevo Leon, Huasteca Canyon"
                     /collection_date="1961"
     gene            1..1998
                     /gene="LOC114141699"
                     /note="trichohyalin-like; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 8
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 1 sample with
                     support for all annotated introns"
                     /db_xref="GeneID:114141699"
     CDS             63..1979
                     /gene="LOC114141699"
                     /codon_start=1
                     /product="trichohyalin-like isoform X3"
                     /protein_id="XP_027868215.1"
                     /db_xref="GeneID:114141699"
                     /translation="

MENNRDEDSSTVNVNNAKRPLNTEEEMKSSALRLSSLLLVCFGLLCAILTAKFVYMSMMTANQMENIKTLATDKKRLIEERKMMKNQIEQVIRDRLLSLLRERLTRERLTQVSEELSNKIEELNRQTEELKKERDELSKEKEEVNKKKEEVNQDREELISNTQGLKKERDELNKEQVKQSKEKEKLKEEEEELSKEKKELSNEKEELSKRKEELKEKDERAGLIKEKDKLSKEKKELNTEKDKLKKKNDELSKEKEEIRKEKDELNKEKYKLSKDKEELSKEKDRLNKQKGDLNKMKAELIKKKEGLSEKTKELNKEINKLNKEKDELSKKTEELIKKKEQLNKEEDELKKEEDKLSKKKEELIKKIEELSKKIMELNKEKAGLSKEKDELSKQKAKLDKEKDELSKDKKKLSNEKDKLDKEKDELSKDKKKLSNEKDGLNKEEGDLNKMKVEQSQKKGELSKEKEELNKMAKELNKEKDDLSKKTAELTKKTEELNKLKVNMDKDLNENKLELNKEKEELNKLKVNLNKEKDELNKNKGKLNKEKEELNKKKVDLNKEKEELNKKKVDLNKEKEELNRQKAELSTKKAELSKKTEELIKKSKDLHKEKEELNKMKDMLSKEKEKLKKEKEKLRQRER"

     misc_feature    279..1919
                     /gene="LOC114141699"
                     /note="helix-rich Mycoplasma protein; Region:
                     Mplasa_alph_rch; TIGR04523"
                     /db_xref="CDD:275316"
ORIGIN      

aagaagaagaagtcagcatcgcagcaaagaaattactgaagactgatatctgttttcacaggatggagaacaacagggatgaagattcttctacagtcaatgtcaacaatgccaaacgtcctcttaatactgaagaagaaatgaaatcatcagcactccggctctcttctctgttgttggtgtgttttgggttgctttgtgccatactgactgcaaaatttgtctacatgagtatgatgacggccaatcagatggaaaatatcaaaacccttgcaacagacaaaaagcgactgattgaggaacgaaagatgatgaaaaaccaaattgagcaggtgatccgagacagactcctgagcctgttaagagagaggcttactcgagagaggcttactcaagtcagcgaggagctgagcaataagatagaggagctgaaccgacagacagaggagctgaagaaagagagagacgagctgagcaaagagaaagaggaggtgaacaaaaagaaggaggaggtgaaccaagacagagaggagctgattagtaacacacaggggctgaagaaagagagagatgagctgaataaagagcaagtgaaacagagcaaagagaaagagaagctaaaagaagaggaagaagagctaagcaaagagaaaaaagagctgagcaatgagaaagaggagctgagcaaaaggaaagaggagctgaaagaaaaagatgagagagcaggacttattaaagagaaagacaagctgagcaaagagaagaaggagctgaacactgagaaagacaaactgaagaaaaagaatgacgagctgagcaaagagaaagaggaaataagaaaagagaaagatgaactgaacaaagaaaaatacaagctgagcaaagacaaagaagagctgagcaaagagaaagacagactgaacaaacagaaaggagacctgaacaaaatgaaagcggagctgatcaaaaagaaagaggggctcagcgagaaaacaaaggagctgaacaaagaaataaataagctgaacaaagagaaagatgagctgagcaaaaagacagaggagctgatcaaaaagaaagagcagctaaacaaagaggaagatgagctgaaaaaagaagaagataagttgagcaaaaagaaagaagagttgatcaaaaagatagaggagctcagcaaaaaaataatggagctgaacaaagagaaagcagggctgagcaaagagaaagatgagctgagcaaacagaaagcaaaactggacaaagagaaagacgagctgagcaaagacaaaaagaagctgagcaacgagaaagacaaactggacaaagagaaagacgagctgagcaaagacaaaaagaagctgagcaatgagaaagatggactgaacaaagaggaaggcgacctaaacaaaatgaaagtggagcagagccaaaaaaagggggagctgagcaaagagaaagaggagctgaacaaaatggcaaaggagctgaacaaagagaaagatgacctgagcaaaaagacagcagagctgaccaagaaaacagaggagctgaacaaattgaaagtgaatatggacaaagacctgaacgaaaataaattagagctgaacaaggagaaagaggagctgaacaaattgaaagtgaacttgaacaaagagaaagatgagctgaacaaaaataaaggaaagttgaacaaagagaaagaggagctgaacaaaaagaaagtggacttgaacaaagagaaagaggagctgaacaaaaagaaagtggacttgaacaaagagaaagaggagctgaacaggcagaaagcagagctgagcacaaagaaagcagagctgagcaaaaagacagaggagctgatcaaaaagtcaaaggatctgcacaaggagaaagaggagctgaacaaaatgaaagatatgctgagcaaagagaaagagaagctgaaaaaagagaaagagaagctgagacaaagagaaagataagctgagcaaagatagaaag

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