2024-12-05 10:48:29, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_028012414 1998 bp mRNA linear VRT 11-FEB-2019 DEFINITION PREDICTED: Xiphophorus couchianus trichohyalin-like (LOC114141699), transcript variant X3, mRNA. ACCESSION XM_028012414 VERSION XM_028012414.1 DBLINK BioProject: PRJNA516883 KEYWORDS RefSeq. SOURCE Xiphophorus couchianus (Monterrey platyfish) ORGANISM Xiphophorus couchianus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_040230.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Xiphophorus couchianus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1998 /organism="Xiphophorus couchianus" /mol_type="mRNA" /isolation_source="77th inbred generation (sibling line bred)" /specimen_voucher="Xc77(B)" /db_xref="taxon:32473" /chromosome="3" /sex="female" /geo_loc_name="Mexico: Nuevo Leon, Huasteca Canyon" /collection_date="1961" gene 1..1998 /gene="LOC114141699" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:114141699" CDS 63..1979 /gene="LOC114141699" /codon_start=1 /product="trichohyalin-like isoform X3" /protein_id="XP_027868215.1" /db_xref="GeneID:114141699" /translation="
MENNRDEDSSTVNVNNAKRPLNTEEEMKSSALRLSSLLLVCFGLLCAILTAKFVYMSMMTANQMENIKTLATDKKRLIEERKMMKNQIEQVIRDRLLSLLRERLTRERLTQVSEELSNKIEELNRQTEELKKERDELSKEKEEVNKKKEEVNQDREELISNTQGLKKERDELNKEQVKQSKEKEKLKEEEEELSKEKKELSNEKEELSKRKEELKEKDERAGLIKEKDKLSKEKKELNTEKDKLKKKNDELSKEKEEIRKEKDELNKEKYKLSKDKEELSKEKDRLNKQKGDLNKMKAELIKKKEGLSEKTKELNKEINKLNKEKDELSKKTEELIKKKEQLNKEEDELKKEEDKLSKKKEELIKKIEELSKKIMELNKEKAGLSKEKDELSKQKAKLDKEKDELSKDKKKLSNEKDKLDKEKDELSKDKKKLSNEKDGLNKEEGDLNKMKVEQSQKKGELSKEKEELNKMAKELNKEKDDLSKKTAELTKKTEELNKLKVNMDKDLNENKLELNKEKEELNKLKVNLNKEKDELNKNKGKLNKEKEELNKKKVDLNKEKEELNKKKVDLNKEKEELNRQKAELSTKKAELSKKTEELIKKSKDLHKEKEELNKMKDMLSKEKEKLKKEKEKLRQRER"
misc_feature 279..1919 /gene="LOC114141699" /note="helix-rich Mycoplasma protein; Region: Mplasa_alph_rch; TIGR04523" /db_xref="CDD:275316" ORIGIN
aagaagaagaagtcagcatcgcagcaaagaaattactgaagactgatatctgttttcacaggatggagaacaacagggatgaagattcttctacagtcaatgtcaacaatgccaaacgtcctcttaatactgaagaagaaatgaaatcatcagcactccggctctcttctctgttgttggtgtgttttgggttgctttgtgccatactgactgcaaaatttgtctacatgagtatgatgacggccaatcagatggaaaatatcaaaacccttgcaacagacaaaaagcgactgattgaggaacgaaagatgatgaaaaaccaaattgagcaggtgatccgagacagactcctgagcctgttaagagagaggcttactcgagagaggcttactcaagtcagcgaggagctgagcaataagatagaggagctgaaccgacagacagaggagctgaagaaagagagagacgagctgagcaaagagaaagaggaggtgaacaaaaagaaggaggaggtgaaccaagacagagaggagctgattagtaacacacaggggctgaagaaagagagagatgagctgaataaagagcaagtgaaacagagcaaagagaaagagaagctaaaagaagaggaagaagagctaagcaaagagaaaaaagagctgagcaatgagaaagaggagctgagcaaaaggaaagaggagctgaaagaaaaagatgagagagcaggacttattaaagagaaagacaagctgagcaaagagaagaaggagctgaacactgagaaagacaaactgaagaaaaagaatgacgagctgagcaaagagaaagaggaaataagaaaagagaaagatgaactgaacaaagaaaaatacaagctgagcaaagacaaagaagagctgagcaaagagaaagacagactgaacaaacagaaaggagacctgaacaaaatgaaagcggagctgatcaaaaagaaagaggggctcagcgagaaaacaaaggagctgaacaaagaaataaataagctgaacaaagagaaagatgagctgagcaaaaagacagaggagctgatcaaaaagaaagagcagctaaacaaagaggaagatgagctgaaaaaagaagaagataagttgagcaaaaagaaagaagagttgatcaaaaagatagaggagctcagcaaaaaaataatggagctgaacaaagagaaagcagggctgagcaaagagaaagatgagctgagcaaacagaaagcaaaactggacaaagagaaagacgagctgagcaaagacaaaaagaagctgagcaacgagaaagacaaactggacaaagagaaagacgagctgagcaaagacaaaaagaagctgagcaatgagaaagatggactgaacaaagaggaaggcgacctaaacaaaatgaaagtggagcagagccaaaaaaagggggagctgagcaaagagaaagaggagctgaacaaaatggcaaaggagctgaacaaagagaaagatgacctgagcaaaaagacagcagagctgaccaagaaaacagaggagctgaacaaattgaaagtgaatatggacaaagacctgaacgaaaataaattagagctgaacaaggagaaagaggagctgaacaaattgaaagtgaacttgaacaaagagaaagatgagctgaacaaaaataaaggaaagttgaacaaagagaaagaggagctgaacaaaaagaaagtggacttgaacaaagagaaagaggagctgaacaaaaagaaagtggacttgaacaaagagaaagaggagctgaacaggcagaaagcagagctgagcacaaagaaagcagagctgagcaaaaagacagaggagctgatcaaaaagtcaaaggatctgcacaaggagaaagaggagctgaacaaaatgaaagatatgctgagcaaagagaaagagaagctgaaaaaagagaaagagaagctgagacaaagagaaagataagctgagcaaagatagaaag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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