2021-01-24 05:25:04, GGRNA.v2 : RefSeq release 203 (Nov, 2020)
LOCUS XM_026947030 5006 bp mRNA linear VRT 13-MAY-2020 DEFINITION PREDICTED: Pangasianodon hypophthalmus testis and ovary specific PAZ domain containing 1 (topaz1), transcript variant X5, mRNA. ACCESSION XM_026947030 VERSION XM_026947030.2 DBLINK BioProject: PRJNA630732 KEYWORDS RefSeq. SOURCE Pangasianodon hypophthalmus (striped catfish) ORGANISM Pangasianodon hypophthalmus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_047607.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On May 13, 2020 this sequence version replaced XM_026947030.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pangasianodon hypophthalmus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5006 /organism="Pangasianodon hypophthalmus" /mol_type="mRNA" /strain="Indonesia" /db_xref="taxon:310915" /chromosome="13" /sex="male" /tissue_type="blood" /dev_stage="adult" /collection_date="Oct-2017" /collected_by="Remi Dugue, Institut de recherche pour le developpement, Institut des Sciences de l'Evolution de Montpellier, Universite de Montpellier, 34095 Montpellier cedex 5, France" gene 1..5006 /gene="topaz1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:113546911" CDS 470..4903 /gene="topaz1" /codon_start=1 /product="uncharacterized protein topaz1 isoform X5" /protein_id="XP_026802831.2" /db_xref="GeneID:113546911" /translation="
MQPSNGGSRIKLNRNAFRLEQGSVPKRRRLARSSGSECTDPVANVHATGSRAGSAPCEPSRAPSGPREAHQHEPTRMTAIPTCDTSVHSKEEPLEPSRAPCTLRDCSNTTTTPNNNNNNNNNSASRRKQIRCHLHLALRFCGGEKSARDAESEQSVSCTVSRYLNGDVRVETTSASGDAIDPHAGSAGKSVANQGVSKSGVKTEKIRLGAPEKKDGRAAHLRPNFNRKAGLRKHFGSISRLGSGRQVKRSVKNACCALCGDVKYTPPARKKNAHVYKDGSRRPSRPRRLERTMVHPVARAKMTTRLIIWFRRHLKVKLCDVAHVFDVTSRDFSCILPAVLLQKRKHKRVKCFSKEFKSLMRLDSQGSGNCGKWIGNQSWEVCTPTNSCASLSSGNQVLGFSVGERILDVAEDIEGWSESSDKQILRMPDCERMRLSSVGGTACVPLKLGEVQHCVETAGYGAEGSREVQEVKAASVRRVPPLLLRRVHACNGFSSSELFQHVDLADNFTVREVDTNDSCLVENGLNDSSVGDANSCQRTTAYMLRPRLSCARTYRSWPFPRHGPPCEMKGSIRTGPRWIVTMEASEGTKNVSNNMQMDFNTSSEGTVGKNTNENLIGFEPHGRSVVVQNSQGQLQFTAQSDSVLASPTLEETSKDQSEFQKNPGKVSTSDSSQGELFKHSCSVFQQNPSSLGFEHENDSQAMDIRSPKVMNSGKLNVIPAESISAVDTESDDLGDSSMNRTQSSKSSKCLQDNENGTEATTFRLPDPLPDLQQSAFQTLSCIVHSREEPQTPTVKVPSSVEPKHTSSVMVHPKEKQTSDKTADQNTSSPTCFGGSSWDTPFKSMTNRDSISSSGEEISSPSPAERPEECDAEYLLLQDEMCEIGKANRSPSPLPATEGSVVTGDDLDVVRAYEDDAIVLDVIQDDPDLFGAIVMGTSGNSASKANPAAVQRGKNMCMQTDQATLVRKPNRIVWGLESESPRKNVQTAGDVHLENHDGFCRGEANELAKGSKSQPTFGIKWLPVNPLVKQEQMVPDCNNNLDEKKSTDLNVNTVNTGLTWLVDDARNNVHTTAGKDINVVRPLTSSYCWYYFSEHHSCLRNVCWFLHVPRDEDEKFCMDIVQKFCRVGSPPIVQRAVEVFVAYYRTNSPGVSFSQNIMNQLLSSLLNLALLRDLVSVINTLLTHKRMPPLEFVMALYEHVRDRGILNFVPELILLTSKITEVGGVFSVEQCEMMQLHLESLHVPRHQMDIFCAVKCRALATNPHTAELSELAQAVVRVELCRQQEDWPALARVFCTVCGGRHSAVELSRFCCCVTMALLKEPKDKLTLPYEPFAESVCQEMPSDEMVKSFLGRVGVSLMLSYHRTQDWTKGLKLLCVMSRLELEFTMLKGLFSSENGTSRCQLVTIATEFFLNSGSIEGALNILKANEWFVSSSAWPCEQEDVQNRRRVLTLLAEKTSYRDTLEVLTNLPGLRQPIGV"
ORIGIN
aaacttccaggcgcggttagctgttattaaattgatttaagtcagacgttatatttaattcggcggaggaaaatgttcagcaaatcaattattcatcataagtgtggtataagaatctttcattttctttgcaaacacaatctttttatttgagcaaattagtttaaagacaccacggcccccactgtatataaatacggtgtgacatcagagctagctagctatattagcataaattagcaagactgtgtcacacgacgctagctatttatattagtgctaaaatttagctaacttttgaactggctatacaggctaactgagaatacttaaatagttctcgagttgttctgttttcctgttttagttgttgaaaaaaatcgtaaaaacgactttctgtgttgttagtttagcaggtaaggtaaaggttggtgcgcgagctgtggtgtagataagttcaataaaagaaatgcagccctcaaacggaggttcccgcataaaattgaaccgaaatgcgttcaggcttgagcaaggctcggtgccgaaacgacgacgccttgccaggtcgtcggggtcagagtgcaccgatcccgtcgctaacgtgcacgcgaccggttcacgtgcaggatctgcgccgtgtgaaccgtcccgcgccccatcaggaccgcgagaagcgcatcagcatgaaccgacacgtatgacagctattccgacgtgcgatacatcggtgcattcgaaagaagagccgctcgagccgagtcgggctccgtgcacgctccgagactgcagtaatactacaactactcctaataataataataataataacaataacagtgcgtcgcggcgcaaacaaatccgctgccatttgcacctggcgctgcgtttttgcggcggcgagaagtccgcgagggacgccgagtccgagcagagcgtgtcgtgcaccgtgtcgcgttatttaaacggagacgtgcgagtcgagacgacaagcgcgagcggggacgcgatcgatccgcatgcaggatctgcgggaaagtcagtagctaatcagggtgtgagcaagtccggggttaaaacggaaaaaatacgactaggggctcctgagaagaaagatggacgagctgctcatctaagaccaaattttaataggaaagctggactgaggaaacactttggttcaatctcaagacttggttcagggagacaagtcaaacgatctgttaaaaatgcatgctgtgccttgtgtggtgatgtaaaatatacccctcctgctcgtaaaaaaaacgctcatgtctataaagatggatcaagacgcccgagccggccaagaaggctggaacggaccatggttcatcctgtggcacgggctaagatgacaaccaggctgattatctggttcaggaggcacctcaaggtgaaactctgtgatgtagcccatgtgtttgatgtgacctcacgtgacttctcgtgcattttgccagcggtgctgctgcaaaagaggaagcacaaaagagtgaaatgcttcagcaaagaattcaagtcactgatgcgccttgattctcaaggcagtgggaactgtgggaagtggattggcaatcaatcctgggaggtgtgtactccaaccaatagctgtgcttctctctcatcaggtaatcaagttttgggattttctgttggcgagcgcattttggatgtagcagaagatattgaggggtggtctgagtcttcggataaacagattttgaggatgccagactgtgagagaatgagactgtcctctgttggggggactgcatgtgtacccttaaaacttggggaggttcagcattgtgttgagactgctggttatggggcagaagggtcaagagaagttcaggaggtcaaagctgcttcagtacgccgtgtgccccctttgttactacgacgtgttcatgcctgcaatggcttttcttcctctgaactctttcaacatgtggatttagctgacaactttacagttagagaggtagacacaaatgacagttgtctggtggagaatggattgaatgatagctcagtgggggatgctaactcctgccagagaaccactgcttatatgttgcggccccgcttatcctgtgcccgcacttacaggtcttggccctttcccagacacggtcctccttgtgaaatgaagggatccatccgtactggccctcgatggattgtgaccatggaggcttcagaaggcacaaaaaatgtgagcaacaacatgcaaatggatttcaatacaagttctgaaggcacagttgggaagaacacgaatgaaaaccttataggtttcgaaccacacggtaggagtgttgtggttcaaaatagccaagggcaactacaatttacagcacagagtgacagtgttctggcctctccaactcttgaggagacttcaaaagatcaatcagaattccagaaaaatccaggaaaagtttcgacatcagatagtagtcagggggaactcttcaagcattcctgcagtgtgtttcagcagaacccatctagtcttggttttgaacatgaaaatgattctcaggctatggatattcgttccccaaaagtcatgaatagtggcaagctaaatgtgattcctgctgagtcaatcagtgctgtggacaccgagtctgatgatcttggtgattcctccatgaataggacacagagttccaagtcaagtaagtgtcttcaggataatgagaatggtacagaggctacaaccttccgtcttccagatccccttccagacctccaacaaagtgcttttcaaactttgtcatgtattgtacattccagagaagaaccacagacccccactgtgaaggtaccttccagtgtggaaccaaagcacacttcctcagtgatggtacatcccaaagagaagcagacatctgataaaactgctgaccaaaacacttcatccccaacctgctttggaggcagtagctgggacacaccctttaaatccatgacaaacagagactccatttcctctagtggggaagaaatcagtagcccgtctcctgccgaaagacctgaggaatgtgacgcagaatatttattgctacaagacgagatgtgtgagattggcaaggctaacagaagtccttcacctcttcctgccacagagggctcagtggttactggtgacgacctggatgttgtgcgagcttacgaggatgatgcaattgtgctcgatgtcattcaagatgacccagatctctttggggccattgttatgggtacatcaggaaattcagcctcaaaagccaatccagctgcagttcagaggggaaagaacatgtgcatgcagactgaccaggcaaccttggtcagaaaacccaacaggatagtctggggcttagagtcagaaagtcccaggaaaaatgttcagactgccggtgatgtccatttggagaatcatgatggtttttgcagaggggaggctaatgaactggctaagggctccaaaagtcagccgacgtttggtataaagtggctcccggttaacccattagtcaagcaagagcagatggttccagattgtaataataacctggatgagaaaaaaagtaccgatctgaatgtcaacacagtgaatactggattgacatggctggtggatgatgcacgcaataatgttcatactactgctgggaaagatatcaacgttgtgagaccattaacatcttcttattgctggtactacttcagtgagcatcactcatgcttgcggaatgtgtgctggttccttcatgtgcccagggatgaggatgaaaagttttgcatggatattgtgcagaagttctgtcgtgttggaagtcctccaattgtccagcgagcagtggaggtttttgttgcttattacaggaccaattctcctggtgtgagtttcagtcagaacatcatgaaccagttgctctcatctctgctcaacctggcactgctcagggacctggtgtcagttataaacacactcctcacacacaagagaatgcctcctcttgaatttgtgatggcactttatgaacatgttcgggatagaggaatcctaaattttgtaccggagctcatacttctcacgtcaaagattacagaggtggggggtgtgttcagtgttgagcagtgcgagatgatgcagcttcatcttgagtctttgcacgtacccagacatcaaatggacattttttgcgcagtaaaatgcagggctctggccactaacccacacactgctgagctgtcggagttggcccaggctgtagtccgagtggagctctgtaggcagcaagaggactggcctgctctagcacgcgtgttctgcactgtgtgtggtggtcgtcacagtgcagtagagctgtcaaggttctgctgctgtgtcaccatggcgctgctgaaagagcctaaagacaaactgactctgccttatgaaccattcgctgagtcagtttgtcaggaaatgccgtcagacgagatggttaaaagctttctgggacgagtaggagtctcactgatgctcagctatcacagaacccaagactggaccaagggtttgaagctgttgtgcgtgatgtctagattggagctggaattcactatgctcaaagggctctttagtagtgaaaatggaacatctcgctgtcagcttgtcaccattgcaacggagttcttccttaacagtggcagcatagaaggagcactgaatatcctcaaagctaatgaatggttcgtgagctcaagtgcatggccgtgtgagcaggaagacgtacagaaccgcaggagagtactgactctgcttgctgagaagacgtcatacagagacacattggaggtcctcactaacctgcccggtctcagacagccaataggtgtgtgatgaatcaggtgttgccggttgctgcagacacactcgaattcatgctgactcagggaatcccactggacttgtcggaacttcaacatctcatccacaaactagg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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