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2021-01-24 06:00:36, GGRNA.v2 : RefSeq release 203 (Nov, 2020)

LOCUS       XM_026947029            5167 bp    mRNA    linear   VRT 13-MAY-2020
DEFINITION  PREDICTED: Pangasianodon hypophthalmus testis and ovary specific
            PAZ domain containing 1 (topaz1), transcript variant X4, mRNA.
ACCESSION   XM_026947029
VERSION     XM_026947029.2
DBLINK      BioProject: PRJNA630732
KEYWORDS    RefSeq.
SOURCE      Pangasianodon hypophthalmus (striped catfish)
  ORGANISM  Pangasianodon hypophthalmus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes;
            Pangasiidae; Pangasianodon.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_047607.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On May 13, 2020 this sequence version replaced XM_026947029.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Pangasianodon hypophthalmus
                                           Annotation Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5167
                     /organism="Pangasianodon hypophthalmus"
                     /mol_type="mRNA"
                     /strain="Indonesia"
                     /db_xref="taxon:310915"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="blood"
                     /dev_stage="adult"
                     /collection_date="Oct-2017"
                     /collected_by="Remi Dugue, Institut de recherche pour le
                     developpement, Institut des Sciences de l'Evolution de
                     Montpellier, Universite de Montpellier, 34095 Montpellier
                     cedex 5, France"
     gene            1..5167
                     /gene="topaz1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:113546911"
     CDS             73..4515
                     /gene="topaz1"
                     /codon_start=1
                     /product="uncharacterized protein topaz1 isoform X4"
                     /protein_id="XP_026802830.2"
                     /db_xref="GeneID:113546911"
                     /translation="
MFSKSIIHHKCDFNRKAGLRKHFGSISRLGSGRQVKRSVKNACCALCGDVKYTPPARKKNAHVYKDGSRRPSRPRRLERTMVHPVARAKMTTRLIIWFRRHLKVKLCDVAHVFDVTSRDFSCILPAVLLQKRKHKRVKCFSKEFKSLMRLDSQGSGNCGKWIGNQSWEVCTPTNSCASLSSGNQVLGFSVGERILDVAEDIEGWSESSDKQILRMPDCERMRLSSVGGTACVPLKLGEVQHCVETAGYGAEGSREVQEVKAASVRRVPPLLLRRVHACNGFSSSELFQHVDLADNFTVREVDTNDSCLVENGLNDSSVGDANSCQRTTAYMLRPRLSCARTYRSWPFPRHGPPCEMKGSIRTGPRWIVTMEASEGTKNVSNNMQMDFNTSSEGTVGKNTNENLIGFEPHGRSVVVQNSQGQLQFTAQSDSVLASPTLEETSKDQSEFQKNPGKVSTSDSSQGELFKHSCSVFQQNPSSLGFEHENDSQAMDIRSPKVMNSGKLNVIPAESISAVDTESDDLGDSSMNRTQSSKSSKCLQDNENGTEATTFRLPDPLPDLQQSAFQTLSCIVHSREEPQTPTVKVPSSVEPKHTSSVMVHPKEKQTSDKTADQNTSSPTCFGGSSWDTPFKSMTNRDSISSSGEEISSPSPAERPEECDAEYLLLQDEMCEIGKANRSPSPLPATEGSVVTGDDLDVVRAYEDDAIVLDVIQDDPDLFGAIVMGTSGNSASKANPAAVQRGKNMCMQTDQATLVRKPNRIVWGLESESPRKNVQTAGDVHLENHDGFCRGEANELAKGSKSQPTFGIKWLPVNPLVKQEQMVPDCNNNLDEKKSTDLNVNTVNTGLTWLVDDARNNVHTTAGKDINVVRPLTSSYCWYYFSEHHSCLRNVCWFLHVPRDEDEKFCMDIVQKFCRVGSPPIVQRAVEVFVAYYRTNSPGVSFSQNIMNQLLSSLLNLALLRDLVSVINTLLTHKRMPPLEFVMALYEHVRDRGILNFVPELILLTSKITEVGGVFSVEQCEMMQLHLESLHVPRHQMDIFCAVKCRALATNPHTAELSELAQAVVRVELCRQQEDWPALARVFCTVCGGRHSAVELSRFCCCVTMALLKEPKDKLTLPYEPFAESVCQEMPSDEMVKSFLGRVGVSLMLSYHRTQDWTKGLKLLCVMSRLELEFTMLKGLFSSENGTSRCQLVTIATEFFLNSGSIEGALNILKANEWFVSSSAWPCEQEDVQNRRRVLTLLAEKTSYRDTLEVLTNLPGLRQPIDGVQAGEYNTMFNAHLRRCVMNQVLPVAADTLEFMLTQGIPLDLSELQHLIHKLGKQNSWSRARTLFKRAHSAGYYSGVVCEKDCLALPCCLTEIEMTLVFEMFIACICTSLENPSDSSQPLLITLKRRTGSEMAMESVYLAAGCRLLSAALIPNPKLSIRYAAVNQEQEQLFKLDRGSAAKWLSHNRSWAQGMWAGSHTLTQAKTARDSERPSEVN"
ORIGIN      
aaacttccaggcgcggttagctgttattaaattgatttaagtcagacgttatatttaattcggcggaggaaaatgttcagcaaatcaattattcatcataagtgtgattttaataggaaagctggactgaggaaacactttggttcaatctcaagacttggttcagggagacaagtcaaacgatctgttaaaaatgcatgctgtgccttgtgtggtgatgtaaaatatacccctcctgctcgtaaaaaaaacgctcatgtctataaagatggatcaagacgcccgagccggccaagaaggctggaacggaccatggttcatcctgtggcacgggctaagatgacaaccaggctgattatctggttcaggaggcacctcaaggtgaaactctgtgatgtagcccatgtgtttgatgtgacctcacgtgacttctcgtgcattttgccagcggtgctgctgcaaaagaggaagcacaaaagagtgaaatgcttcagcaaagaattcaagtcactgatgcgccttgattctcaaggcagtgggaactgtgggaagtggattggcaatcaatcctgggaggtgtgtactccaaccaatagctgtgcttctctctcatcaggtaatcaagttttgggattttctgttggcgagcgcattttggatgtagcagaagatattgaggggtggtctgagtcttcggataaacagattttgaggatgccagactgtgagagaatgagactgtcctctgttggggggactgcatgtgtacccttaaaacttggggaggttcagcattgtgttgagactgctggttatggggcagaagggtcaagagaagttcaggaggtcaaagctgcttcagtacgccgtgtgccccctttgttactacgacgtgttcatgcctgcaatggcttttcttcctctgaactctttcaacatgtggatttagctgacaactttacagttagagaggtagacacaaatgacagttgtctggtggagaatggattgaatgatagctcagtgggggatgctaactcctgccagagaaccactgcttatatgttgcggccccgcttatcctgtgcccgcacttacaggtcttggccctttcccagacacggtcctccttgtgaaatgaagggatccatccgtactggccctcgatggattgtgaccatggaggcttcagaaggcacaaaaaatgtgagcaacaacatgcaaatggatttcaatacaagttctgaaggcacagttgggaagaacacgaatgaaaaccttataggtttcgaaccacacggtaggagtgttgtggttcaaaatagccaagggcaactacaatttacagcacagagtgacagtgttctggcctctccaactcttgaggagacttcaaaagatcaatcagaattccagaaaaatccaggaaaagtttcgacatcagatagtagtcagggggaactcttcaagcattcctgcagtgtgtttcagcagaacccatctagtcttggttttgaacatgaaaatgattctcaggctatggatattcgttccccaaaagtcatgaatagtggcaagctaaatgtgattcctgctgagtcaatcagtgctgtggacaccgagtctgatgatcttggtgattcctccatgaataggacacagagttccaagtcaagtaagtgtcttcaggataatgagaatggtacagaggctacaaccttccgtcttccagatccccttccagacctccaacaaagtgcttttcaaactttgtcatgtattgtacattccagagaagaaccacagacccccactgtgaaggtaccttccagtgtggaaccaaagcacacttcctcagtgatggtacatcccaaagagaagcagacatctgataaaactgctgaccaaaacacttcatccccaacctgctttggaggcagtagctgggacacaccctttaaatccatgacaaacagagactccatttcctctagtggggaagaaatcagtagcccgtctcctgccgaaagacctgaggaatgtgacgcagaatatttattgctacaagacgagatgtgtgagattggcaaggctaacagaagtccttcacctcttcctgccacagagggctcagtggttactggtgacgacctggatgttgtgcgagcttacgaggatgatgcaattgtgctcgatgtcattcaagatgacccagatctctttggggccattgttatgggtacatcaggaaattcagcctcaaaagccaatccagctgcagttcagaggggaaagaacatgtgcatgcagactgaccaggcaaccttggtcagaaaacccaacaggatagtctggggcttagagtcagaaagtcccaggaaaaatgttcagactgccggtgatgtccatttggagaatcatgatggtttttgcagaggggaggctaatgaactggctaagggctccaaaagtcagccgacgtttggtataaagtggctcccggttaacccattagtcaagcaagagcagatggttccagattgtaataataacctggatgagaaaaaaagtaccgatctgaatgtcaacacagtgaatactggattgacatggctggtggatgatgcacgcaataatgttcatactactgctgggaaagatatcaacgttgtgagaccattaacatcttcttattgctggtactacttcagtgagcatcactcatgcttgcggaatgtgtgctggttccttcatgtgcccagggatgaggatgaaaagttttgcatggatattgtgcagaagttctgtcgtgttggaagtcctccaattgtccagcgagcagtggaggtttttgttgcttattacaggaccaattctcctggtgtgagtttcagtcagaacatcatgaaccagttgctctcatctctgctcaacctggcactgctcagggacctggtgtcagttataaacacactcctcacacacaagagaatgcctcctcttgaatttgtgatggcactttatgaacatgttcgggatagaggaatcctaaattttgtaccggagctcatacttctcacgtcaaagattacagaggtggggggtgtgttcagtgttgagcagtgcgagatgatgcagcttcatcttgagtctttgcacgtacccagacatcaaatggacattttttgcgcagtaaaatgcagggctctggccactaacccacacactgctgagctgtcggagttggcccaggctgtagtccgagtggagctctgtaggcagcaagaggactggcctgctctagcacgcgtgttctgcactgtgtgtggtggtcgtcacagtgcagtagagctgtcaaggttctgctgctgtgtcaccatggcgctgctgaaagagcctaaagacaaactgactctgccttatgaaccattcgctgagtcagtttgtcaggaaatgccgtcagacgagatggttaaaagctttctgggacgagtaggagtctcactgatgctcagctatcacagaacccaagactggaccaagggtttgaagctgttgtgcgtgatgtctagattggagctggaattcactatgctcaaagggctctttagtagtgaaaatggaacatctcgctgtcagcttgtcaccattgcaacggagttcttccttaacagtggcagcatagaaggagcactgaatatcctcaaagctaatgaatggttcgtgagctcaagtgcatggccgtgtgagcaggaagacgtacagaaccgcaggagagtactgactctgcttgctgagaagacgtcatacagagacacattggaggtcctcactaacctgcccggtctcagacagccaatagatggtgttcaggcgggtgagtacaataccatgtttaatgcacaccttcgaaggtgtgtgatgaatcaggtgttgccggttgctgcagacacactcgaattcatgctgactcagggaatcccactggacttgtcggaacttcaacatctcatccacaaactaggcaaacagaacagttggagccgtgccaggactctgttcaaacgtgctcattctgcaggttattactctggggttgtgtgtgagaaggattgcttggccctgccctgttgtctcacagagattgagatgactctggtatttgagatgttcattgcctgcatctgtacaagccttgaaaatcccagtgactcttcccagccactgctcatcacactcaaacggcgcactggcagtgagatggcgatggagagtgtgtatttggcagctggatgccgcttgctttcagcagcactgataccgaaccccaaactgagcattcgttacgcagctgtcaatcaggaacaggagcagctttttaaactggaccgtggctctgcagctaagtggctttcacataaccgcagctgggctcaggggatgtgggcaggctcacacacactcacacaagccaaaacagccagagactctgaaagaccttccgaggtaaactgattgtcacgacatatagctaatacaaactactggtcctgtaaactgatcagcagtgaattctttaaaattaagttcttagatatagaaaaataattggcttgtttaaaaatggactgattgtgtgcttaagaataaagggctggttggatgtgttttttcactgtgagaggacttggccgatttttatatttttttttctggctctgctttttaaatttctttggctattgaatgtcttatttcataatgttagtaatacaaacccatctagcaaatgagcctcaacactacacagttgatgctgcataagaaacagttttgaaacagaaacagaaatcagtttttggcacttactttgcatatatttggatttagatttagattatgatactttttttgtttcatgtgcagcagtttgttttatagttaactatgcaaatagaaaaatgcccattttagaaatgatggaagaaaagtctgagacgtgtgtgaagtctgccttttgcaaatttccaatgtgtgcagtttcagtttgttccattttcaaatattgttgtaaatatttgaaaataaataagtgaaataattcattcttgtgcatgtcaaagacatagttatggagacatctaaacggggttacatagcagtagta
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]