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2020-12-05 23:29:03, GGRNA.v2 : RefSeq release 202 (Sep, 2020)

LOCUS       XM_026347957            6874 bp    mRNA    linear   VRT 13-APR-2020
DEFINITION  PREDICTED: Anabas testudineus argonaute RISC component 4 (ago4),
            transcript variant X3, mRNA.
ACCESSION   XM_026347957
VERSION     XM_026347957.1
DBLINK      BioProject: PRJNA489257
KEYWORDS    RefSeq.
SOURCE      Anabas testudineus (climbing perch)
  ORGANISM  Anabas testudineus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Neoteleostei;
            Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei;
            Anabantidae; Anabas.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_046620.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Anabas testudineus Annotation
                                           Release 101
            Annotation Version          :: 101
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.4
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6874
                     /organism="Anabas testudineus"
                     /mol_type="mRNA"
                     /db_xref="taxon:64144"
                     /chromosome="11"
                     /sex="male"
     gene            1..6874
                     /gene="ago4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 5 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 5 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:113154002"
     CDS             187..2811
                     /gene="ago4"
                     /codon_start=1
                     /product="protein argonaute-4 isoform X3"
                     /protein_id="XP_026203742.1"
                     /db_xref="GeneID:113154002"
                     /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
     misc_feature    268..657
                     /gene="ago4"
                     /note="N-terminal domain of argonaute; Region: ArgoN;
                     pfam16486"
                     /db_xref="CDD:339747"
     misc_feature    694..840
                     /gene="ago4"
                     /note="Argonaute linker 1 domain; Region: ArgoL1;
                     pfam08699"
                     /db_xref="CDD:337161"
     misc_feature    841..1203
                     /gene="ago4"
                     /note="PAZ domain, argonaute_like subfamily. Argonaute is
                     part of the RNA-induced silencing complex (RISC), and is
                     an endonuclease that plays a key role in the RNA
                     interference pathway. The PAZ domain has been named after
                     the proteins Piwi,Argonaut, and Zwille; Region:
                     PAZ_argonaute_like; cd02846"
                     /db_xref="CDD:239212"
     misc_feature    order(997..999,1042..1044,1084..1086,1096..1098,
                     1150..1152,1171..1173,1177..1179)
                     /gene="ago4"
                     /note="nucleic acid-binding interface [nucleotide
                     binding]; other site"
                     /db_xref="CDD:239212"
     misc_feature    1342..2682
                     /gene="ago4"
                     /note="PIWI domain, Argonaute-like subfamily. Argonaute is
                     the central component of the RNA-induced silencing complex
                     (RISC) and related complexes. The PIWI domain is the
                     C-terminal portion of Argonaute and consists of two
                     subdomains, one of which provides the...; Region:
                     Piwi_ago-like; cd04657"
                     /db_xref="CDD:240015"
     misc_feature    order(1786..1788,1798..1800,1834..1845,1852..1854,
                     1876..1878,1885..1887,1897..1899,1909..1911)
                     /gene="ago4"
                     /note="5' RNA guide strand anchoring site; other site"
                     /db_xref="CDD:240015"
     misc_feature    order(1990..1992,1996..1998,2236..2238,2650..2652)
                     /gene="ago4"
                     /note="active site"
                     /db_xref="CDD:240015"
ORIGIN      
aaatcctcagaagcagcagtagcggcggtagctgaggtccgtcagcccaggcagccgtcatccacgcatttatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagtgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcctgcccctacgtctctgtttcagccgccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggtgcagattcctaagattgatgtctatcactatgatatcgacatcaaacctgagaaacggcctcggagggtcaacagggaggtggtggacaccatggtgcggcacttcaagatgcagatctttggagaccgacaacctggctatgatgggaagaggaacatgtacacagcacatccactgccaattggaagagacagggtggatctggaggtgaccctgcctggtgaagggaaggatcagaccttcaaggtgtctttgcagtgggtgtctgtggtcagtctacagatgctgctggaagccctgtcaggtcacctcaacgaggtccccgaggactctgttcaggctttggacgtcatcacacggcatctgccttccatgaggtacactccagtggggcgatcatttttctcccctccggagggctattaccatcctcttggtggaggcagggaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcaactgctttctaccgtgctcagcctgtgattgagttcatgtgtgaggtgctcgatattcagaacatcaatgaacagaccaaaccactgactgactcgcagcgtgtcaaattcaccaaggaaataagaggcttaaaagttgaggtcacacactgtggtcagatgaagaggaagtaccgtgtgtgcaacgttacacgtcgacctgccagccaccaaacgttccccttacagcttgagaacggccaagccatggagtgcacagtagctcaatatttcaaacagaagtacaatctgcagctcaaatatccacatttaccctgtctgcaagtagggcaagaacagaagcacacctaccttcccctggaggtctgtaacatagtagcaggccagcgttgtatcaagaaactgacagacaaccagacatccaccatgatcaaagctacagctcgctcagcccccgacagacaggaagagatcagcagactggtcaaaagcaacagcatggtcgggggtccagacccttacctgaaagaatttggcattgtggtgcacaacgatatgaccgaagtgacagggcgtgttctcccagcgcccatgctgcagtatgggggccgggtgagtacagacacagggagggactgtggcaggaataaaaccgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcatcgagatcaaagtctgggctgttgcctgcttcgccccacagaaacagtgtcgggaagacctgctcaagagcttcactgaccagctgagaaagatctccaaggatgctgggatgcccattcagggccagccatgtttctgtaaatacgcccaaggagctgacagtgtggagcccatgttcaaacacctcaaaatgtcttatgttggtctgcagctgattgtggtcatcctgcctggaaaaaccccagtttatgctgaggtgaagcgagtgggtgacaccctcctcggcatggccacccagtgtgtgcaggtgaagaacgtagtgaagacgtccccacaaactctctccaacctctgcctcaagatcaacgccaagcttggaggcatcaacaatgtcctggttcctcatcagaggccctctgtgttccagcagcctgtcatcttcctgggtgctgacgtgacacatcctccagcaggtgatgggaagaagccgtccattgcagcagtggtgggcagcatggatggacaccccagccgatactgtgcaacagtgcgagttcagacatcacgacaagacatgtcccaggagcaactcttcagccaggaggtgatccaagacttgaccaacatggtgcgggagctgctcattcagttctacaagtctacacgcttcaaacccacgcgcatcatctattaccgtggcggcgtgtctgagggacaaatgaaacaggtagcatggccggagctgatagctattcggaaggcatgtatcagtctggaagaggattacaggccgggcattacctacattgtagtccagaaacgtcaccacactcgtctcttctgctctgataaagctgagagggttggaaagagtggtaacgtcccagctggtaccaccgtggacagcaccatcacacacccgtccgagtttgacttctacctgtgcagccatgctgggattcagggaaccagtcgtccttcccactaccacgtcctgtgggatgacaactgtttcacggccgatgaactgcagctcctcacctaccagctttgccacacctacgtacgctgcacacgctctgtttccatcccagcaccagcctattatgccaggctagtggctttccgagcccgctaccacctggtggacaaagaccatgacagtgctgaaggcagccacgtgtcgggccagagtaatggccgggaccctcaggcgttggccaaggcagttcagatccactatgacacccagcacaccatgtacttcgcctgatctagggagaacgtcagccagtccacccgcggattccctttctttctgtctttttttttttttctttttcttttttttttttttaaatctcttatttgccagtctctctccttctctcacatctcctttaccttgtagtctgtcttctttctcttcataatcactctacgttttctgaatctgcaccaaagcggctctgggacaggagaatctgctgtgtctcaatttccagcggattccgtttcatggaacaatctccagccagcgttcccaatcgagtcgccttcctaaccagcaatccagcactgtgaaccctgagggttctcagtacacaaaagaaaaaaaaaaaacacgaaaaaacaaaaacaaaccatacacacacatactacaagttgagccattattttgtgtttgtttttgttttttctatttgaatgtctgcactcttgtgttaaagatacactgagcaagagagtagattggcacaatctgtgtcagcgcagctcttgagctcttccagctaagcaggactcttatctacttttacctcaaagcccctttgggcaaaatctgtcacaaggtcttgggtttattgggtggtgggagggaactctacataacaagagatgaaggggagtcgaccttttgagaatgatatatatatattttttcctttttatgagcgtgtgttttaaccttttcctcctttacagacttttacaagcgaggtgacctgtgtgtccatgcccattactactttcctcctatcttagcgaagaatatgttaacctgtttgtgcgagtgcgtttgtgtgaatctgtatatacgtgtactgctgtatgagagtgtttgtgtatgcatgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagattcgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgaaacatatgacttaaacgggcctcattgaggctggtgtgggtatttgtagcagtcctgggtcacttattaattgaaatgctttgagttacattgtgaacacgtgctgatgctgcgcgatcggtgggatttgcacctttggaagccagctgttccttttgtgcctcgaaacaacaaagaatcccaggaaaaaaaaaaagtaacttaatccaattcaagtagtagatgaagccaggtctgacgtgtagcagtagcaaccgtggtttgcccggtgactggctcagcattgggacctgttgaatggctgaaggcattaaacgcagagtagggtcttaacagcctgtctttgtgtgaaaagcgggatcttatttttctttggacctgattatctgaaagattatatgacactgctggacatggctttcttcttttccttttctttttatgatgtagttttaagggccggaaaagatagtttttttttttttgttttttttttggggttttgttttgtttttaaaaaggtctccttcgctaatactggccaattcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcttacctttatgcatttatacatacggatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcctaaagaaacgtgtttagaattagtagtttaccattgatgttgttattgttgttctcaatgttgttactattgtgatgaaatttaaggttggcagcaaagccagtttatagttactagtgcgacttcaggagttcagttgctgagctgcaggttatggggtaaagctttgagttggacgtttatttcgtttgttttgttttttttcttgtagcattctggctaatggtgaggagaggtaggccccaggatggatgaattcatgcttcctctgtaggttctgatgtgagtaaatattagcagcaggctggaaggattgtgtagcactcctactgcttatatagatctgctttggtgttaaatcagctgatgttggatggttttgatgggatagatggagacaatcaggaactgtaatcagagtgaacctaggttaagggatttgtagaaatggtttgcgataggcaatgagttgaaattttagacttttctattaccgtgtatttgaagtatacccatcttaaaatctctactatttaacggtgtttgtgtcatatttttatgcattttttttaacactggatttaatgaattgacaataagcataagcactgcccttggatccctgtagaaacacatggcaagctattatcatgtagtgacatcagcagtggcgcaccctggtgttgtggtgggataaaggtgtgagacagtcaacatgcacgcctcatcggggaggatagctcagtgaaaacccttttgtaataaaccacccttaaagcaacaggtttactatgaatgagtttgagcacctgcctgttgaaggcgtggacgttggcccaagagcagagaagcaggaaaggaggagagcaaattagaagggcgctgtccagggattgtctacaagaagttttacttcgtttaaagggggcagatgagtttttaaatgtgcactagttttaccaagccaagtgggctgtgattgaatctctaatgcagattaatttgtataaaattacgaagcttgaccattaaactccagtcggataaatgatcactccctatttataacatgattgcaaagcaatattaacccagctctagttttcagatgtggaaaaacaaagctataattctgctcattgtggttgttgggtctacactcgctattgtgtctctgtactttttttaaatttaatttgcttgtatcaatcagtgggtatgtgcattttggtggaatagttatatgtaggctttagacggttttctttaaagtaacaaaatgtagactttgctcgcctgcatgccagattattgtcctttttaaaaaacaaaaacaaaaaaaaatctttttggaatcgtatttatgagaaaggaaaaaaatataattgctttttggtttgtttttgttttttttttgttttgtttttttggttaaatgtttatcaatttagtgggactgttttaggctagcaatatttgtccagtctctctacgatgtattttgaagattcctacacaaatgtcagtaatttggggggtacaagctctttcctgaggggaggggggccggctctttacgctgtgttcaaattcaaacgaggtactttcttcaaacgtgaacccgttaaagaaaccgaaacccctctcctctttgccaggagcaagcatctgttttatctccttgttcctggtttgtacccatggccacacctctttgtgggggtgggggctcccctgtctccatggcaactctgttgacccctcacaaatgcacttcctctttgtgaaggggtccccatggcggagcgggattacctctttttaacctttttaaaaaataaaatttaaaaaaaaaatcacaattctttctgtgccccgatagaaggagagcatgaattatttttaaagtcctctcactttgatatattgttatatcttaacggatttgtaatttgacattgtgtatcgtgtatcctaatttaattttccctttttttttttttttcggttcctcgatttgggtttgttatagctctgctctgtttatttgatttttttttgttctgctagtggtctctgaagctgtgtgtgattgtccaatagcaatagaaccatagaattggaacattccaattctgtgaatggaacgttccgatcctgtgaatgaacggaacctttttattattattttttattggaccagttgtgagaggtgggcattcgaaccccgccccccagcagaaggccattcactcgctgttattgctattatgtgacatgttcaaatactttttttttttttttaattttattttattttttattttagcctgcagggaattcttgtgttaatgtgcaaagtaataaattggtattttatgcctataa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]