2024-04-20 13:24:33, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026347956 6889 bp mRNA linear VRT 13-APR-2020 DEFINITION PREDICTED: Anabas testudineus argonaute RISC component 4 (ago4), transcript variant X2, mRNA. ACCESSION XM_026347956 VERSION XM_026347956.1 DBLINK BioProject: PRJNA489257 KEYWORDS RefSeq. SOURCE Anabas testudineus (climbing perch) ORGANISM Anabas testudineus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Anabantiformes; Anabantoidei; Anabantidae; Anabas. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046620.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Anabas testudineus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6889 /organism="Anabas testudineus" /mol_type="mRNA" /db_xref="taxon:64144" /chromosome="11" /sex="male" gene 1..6889 /gene="ago4" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:113154002" CDS 187..2826 /gene="ago4" /codon_start=1 /product="protein argonaute-4 isoform X2" /protein_id="XP_026203741.1" /db_xref="GeneID:113154002" /translation="
MEALGPGPPAPTSLFQPPRRPGLGTVGKPIRLLANHFQVQIPKIDVYHYDIDIKPEKRPRRVNREVVDTMVRHFKMQIFGDRQPGYDGKRNMYTAHPLPIGRDRVDLEVTLPGEGKDQTFKVSLQWVSVVSLQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWNMMLNIDVSATAFYRAQPVIEFMCEVLDIQNINEQTKPLTDSQRVKFTKEIRGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLENGQAMECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVKSNSMVGGPDPYLKEFGIVVHNDMTEVTGRVLPAPMLQYGGRVSTDTGRDCGRGLSPQNKTVATPNQGVWDMRGKQFYAGIEIKVWAVACFAPQKQCREDLLKSFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFKHLKMSYVGLQLIVVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINAKLGGINNVLVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDGHPSRYCATVRVQTSRQDMSQEQLFSQEVIQDLTNMVRELLIQFYKSTRFKPTRIIYYRGGVSEGQMKQVAWPELIAIRKACISLEEDYRPGITYIVVQKRHHTRLFCSDKAERVGKSGNVPAGTTVDSTITHPSEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYARLVAFRARYHLVDKDHDSAEGSHVSGQSNGRDPQALAKAVQIHYDTQHTMYFA"
misc_feature 268..657 /gene="ago4" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 688..840 /gene="ago4" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 841..1203 /gene="ago4" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(997..999,1042..1044,1084..1086,1096..1098, 1150..1152,1171..1173,1177..1179) /gene="ago4" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1342..2697 /gene="ago4" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1801..1803,1813..1815,1849..1860,1867..1869, 1891..1893,1900..1902,1912..1914,1924..1926) /gene="ago4" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2005..2007,2011..2013,2251..2253,2665..2667) /gene="ago4" /note="active site" /db_xref="CDD:240015" ORIGIN
aaatcctcagaagcagcagtagcggcggtagctgaggtccgtcagcccaggcagccgtcatccacgcatttatctatattcccttttcttaaattagccactttaagcttcgcgataccgcccccaatttcagtgtcggtacggagccgccaggccgggacagagacggagagagaggcctcggccatggaagcgctcggacccggcccgcctgcccctacgtctctgtttcagccgccacggcgtcccggccttggcacggtggggaaacccatccggctccttgccaaccacttccaggtgcagattcctaagattgatgtctatcactatgatatcgacatcaaacctgagaaacggcctcggagggtcaacagggaggtggtggacaccatggtgcggcacttcaagatgcagatctttggagaccgacaacctggctatgatgggaagaggaacatgtacacagcacatccactgccaattggaagagacagggtggatctggaggtgaccctgcctggtgaagggaaggatcagaccttcaaggtgtctttgcagtgggtgtctgtggtcagtctacagatgctgctggaagccctgtcaggtcacctcaacgaggtccccgaggactctgttcaggctttggacgtcatcacacggcatctgccttccatgaggtacactccagtggggcgatcatttttctcccctccggagggctattaccatcctcttggtggaggcagggaggtgtggtttggtttccatcagtctgtccgtcctgccatgtggaacatgatgctcaacatcgatgtgtcagcaactgctttctaccgtgctcagcctgtgattgagttcatgtgtgaggtgctcgatattcagaacatcaatgaacagaccaaaccactgactgactcgcagcgtgtcaaattcaccaaggaaataagaggcttaaaagttgaggtcacacactgtggtcagatgaagaggaagtaccgtgtgtgcaacgttacacgtcgacctgccagccaccaaacgttccccttacagcttgagaacggccaagccatggagtgcacagtagctcaatatttcaaacagaagtacaatctgcagctcaaatatccacatttaccctgtctgcaagtagggcaagaacagaagcacacctaccttcccctggaggtctgtaacatagtagcaggccagcgttgtatcaagaaactgacagacaaccagacatccaccatgatcaaagctacagctcgctcagcccccgacagacaggaagagatcagcagactggtcaaaagcaacagcatggtcgggggtccagacccttacctgaaagaatttggcattgtggtgcacaacgatatgaccgaagtgacagggcgtgttctcccagcgcccatgctgcagtatgggggccgggtgagtacagacacagggagggactgtggcaggggactctctccgcagaataaaaccgtggccacgcccaaccagggcgtgtgggacatgagagggaagcagttctacgccggcatcgagatcaaagtctgggctgttgcctgcttcgccccacagaaacagtgtcgggaagacctgctcaagagcttcactgaccagctgagaaagatctccaaggatgctgggatgcccattcagggccagccatgtttctgtaaatacgcccaaggagctgacagtgtggagcccatgttcaaacacctcaaaatgtcttatgttggtctgcagctgattgtggtcatcctgcctggaaaaaccccagtttatgctgaggtgaagcgagtgggtgacaccctcctcggcatggccacccagtgtgtgcaggtgaagaacgtagtgaagacgtccccacaaactctctccaacctctgcctcaagatcaacgccaagcttggaggcatcaacaatgtcctggttcctcatcagaggccctctgtgttccagcagcctgtcatcttcctgggtgctgacgtgacacatcctccagcaggtgatgggaagaagccgtccattgcagcagtggtgggcagcatggatggacaccccagccgatactgtgcaacagtgcgagttcagacatcacgacaagacatgtcccaggagcaactcttcagccaggaggtgatccaagacttgaccaacatggtgcgggagctgctcattcagttctacaagtctacacgcttcaaacccacgcgcatcatctattaccgtggcggcgtgtctgagggacaaatgaaacaggtagcatggccggagctgatagctattcggaaggcatgtatcagtctggaagaggattacaggccgggcattacctacattgtagtccagaaacgtcaccacactcgtctcttctgctctgataaagctgagagggttggaaagagtggtaacgtcccagctggtaccaccgtggacagcaccatcacacacccgtccgagtttgacttctacctgtgcagccatgctgggattcagggaaccagtcgtccttcccactaccacgtcctgtgggatgacaactgtttcacggccgatgaactgcagctcctcacctaccagctttgccacacctacgtacgctgcacacgctctgtttccatcccagcaccagcctattatgccaggctagtggctttccgagcccgctaccacctggtggacaaagaccatgacagtgctgaaggcagccacgtgtcgggccagagtaatggccgggaccctcaggcgttggccaaggcagttcagatccactatgacacccagcacaccatgtacttcgcctgatctagggagaacgtcagccagtccacccgcggattccctttctttctgtctttttttttttttctttttcttttttttttttttaaatctcttatttgccagtctctctccttctctcacatctcctttaccttgtagtctgtcttctttctcttcataatcactctacgttttctgaatctgcaccaaagcggctctgggacaggagaatctgctgtgtctcaatttccagcggattccgtttcatggaacaatctccagccagcgttcccaatcgagtcgccttcctaaccagcaatccagcactgtgaaccctgagggttctcagtacacaaaagaaaaaaaaaaaacacgaaaaaacaaaaacaaaccatacacacacatactacaagttgagccattattttgtgtttgtttttgttttttctatttgaatgtctgcactcttgtgttaaagatacactgagcaagagagtagattggcacaatctgtgtcagcgcagctcttgagctcttccagctaagcaggactcttatctacttttacctcaaagcccctttgggcaaaatctgtcacaaggtcttgggtttattgggtggtgggagggaactctacataacaagagatgaaggggagtcgaccttttgagaatgatatatatatattttttcctttttatgagcgtgtgttttaaccttttcctcctttacagacttttacaagcgaggtgacctgtgtgtccatgcccattactactttcctcctatcttagcgaagaatatgttaacctgtttgtgcgagtgcgtttgtgtgaatctgtatatacgtgtactgctgtatgagagtgtttgtgtatgcatgtgtttcatggcaggccactgaattgtaaagggaaatcaaggagataactgctgtaaatgcctcagattcgttgtttttatattcacacatacagtacatataagcatatatttacatctatagagcaactttgaaacatatgacttaaacgggcctcattgaggctggtgtgggtatttgtagcagtcctgggtcacttattaattgaaatgctttgagttacattgtgaacacgtgctgatgctgcgcgatcggtgggatttgcacctttggaagccagctgttccttttgtgcctcgaaacaacaaagaatcccaggaaaaaaaaaaagtaacttaatccaattcaagtagtagatgaagccaggtctgacgtgtagcagtagcaaccgtggtttgcccggtgactggctcagcattgggacctgttgaatggctgaaggcattaaacgcagagtagggtcttaacagcctgtctttgtgtgaaaagcgggatcttatttttctttggacctgattatctgaaagattatatgacactgctggacatggctttcttcttttccttttctttttatgatgtagttttaagggccggaaaagatagtttttttttttttgttttttttttggggttttgttttgtttttaaaaaggtctccttcgctaatactggccaattcattgcactgacccgggacgctaggcaagcaacagagggcactctcaatctctcttacctttatgcatttatacatacggatcaacaaagcagatttgtaaaagtttaatataagatgttttgtggttatcctaaagaaacgtgtttagaattagtagtttaccattgatgttgttattgttgttctcaatgttgttactattgtgatgaaatttaaggttggcagcaaagccagtttatagttactagtgcgacttcaggagttcagttgctgagctgcaggttatggggtaaagctttgagttggacgtttatttcgtttgttttgttttttttcttgtagcattctggctaatggtgaggagaggtaggccccaggatggatgaattcatgcttcctctgtaggttctgatgtgagtaaatattagcagcaggctggaaggattgtgtagcactcctactgcttatatagatctgctttggtgttaaatcagctgatgttggatggttttgatgggatagatggagacaatcaggaactgtaatcagagtgaacctaggttaagggatttgtagaaatggtttgcgataggcaatgagttgaaattttagacttttctattaccgtgtatttgaagtatacccatcttaaaatctctactatttaacggtgtttgtgtcatatttttatgcattttttttaacactggatttaatgaattgacaataagcataagcactgcccttggatccctgtagaaacacatggcaagctattatcatgtagtgacatcagcagtggcgcaccctggtgttgtggtgggataaaggtgtgagacagtcaacatgcacgcctcatcggggaggatagctcagtgaaaacccttttgtaataaaccacccttaaagcaacaggtttactatgaatgagtttgagcacctgcctgttgaaggcgtggacgttggcccaagagcagagaagcaggaaaggaggagagcaaattagaagggcgctgtccagggattgtctacaagaagttttacttcgtttaaagggggcagatgagtttttaaatgtgcactagttttaccaagccaagtgggctgtgattgaatctctaatgcagattaatttgtataaaattacgaagcttgaccattaaactccagtcggataaatgatcactccctatttataacatgattgcaaagcaatattaacccagctctagttttcagatgtggaaaaacaaagctataattctgctcattgtggttgttgggtctacactcgctattgtgtctctgtactttttttaaatttaatttgcttgtatcaatcagtgggtatgtgcattttggtggaatagttatatgtaggctttagacggttttctttaaagtaacaaaatgtagactttgctcgcctgcatgccagattattgtcctttttaaaaaacaaaaacaaaaaaaaatctttttggaatcgtatttatgagaaaggaaaaaaatataattgctttttggtttgtttttgttttttttttgttttgtttttttggttaaatgtttatcaatttagtgggactgttttaggctagcaatatttgtccagtctctctacgatgtattttgaagattcctacacaaatgtcagtaatttggggggtacaagctctttcctgaggggaggggggccggctctttacgctgtgttcaaattcaaacgaggtactttcttcaaacgtgaacccgttaaagaaaccgaaacccctctcctctttgccaggagcaagcatctgttttatctccttgttcctggtttgtacccatggccacacctctttgtgggggtgggggctcccctgtctccatggcaactctgttgacccctcacaaatgcacttcctctttgtgaaggggtccccatggcggagcgggattacctctttttaacctttttaaaaaataaaatttaaaaaaaaaatcacaattctttctgtgccccgatagaaggagagcatgaattatttttaaagtcctctcactttgatatattgttatatcttaacggatttgtaatttgacattgtgtatcgtgtatcctaatttaattttccctttttttttttttttcggttcctcgatttgggtttgttatagctctgctctgtttatttgatttttttttgttctgctagtggtctctgaagctgtgtgtgattgtccaatagcaatagaaccatagaattggaacattccaattctgtgaatggaacgttccgatcctgtgaatgaacggaacctttttattattattttttattggaccagttgtgagaggtgggcattcgaaccccgccccccagcagaaggccattcactcgctgttattgctattatgtgacatgttcaaatactttttttttttttttaattttattttattttttattttagcctgcagggaattcttgtgttaatgtgcaaagtaataaattggtattttatgcctataa
//
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@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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