2024-04-20 18:23:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026316861 5015 bp mRNA linear VRT 10-APR-2020 DEFINITION PREDICTED: Mastacembelus armatus protein argonaute-3 (LOC113136233), transcript variant X3, mRNA. ACCESSION XM_026316861 VERSION XM_026316861.1 DBLINK BioProject: PRJNA489256 KEYWORDS RefSeq. SOURCE Mastacembelus armatus (zig-zag eel) ORGANISM Mastacembelus armatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Anabantaria; Synbranchiformes; Mastacembelidae; Mastacembelus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_046648.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Mastacembelus armatus Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5015 /organism="Mastacembelus armatus" /mol_type="mRNA" /db_xref="taxon:205130" /chromosome="16" gene 1..5015 /gene="LOC113136233" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 52 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns" /db_xref="GeneID:113136233" CDS 832..3411 /gene="LOC113136233" /codon_start=1 /product="protein argonaute-3 isoform X2" /protein_id="XP_026172646.1" /db_xref="GeneID:113136233" /translation="
MEIGTGAVGAQSLFSMPRRPGYGTMGKPIKLLANCFQVEIPKMDVYLYEVDIKPDKCPRRVNREVVDSMVQHFKVTIFGDRRPVYDGKKSLYTANPLPVAPTGVDLDVTLPGEGGKDRPFKVSIKFVSLVSWHMLHEVLTGRSMPEPLELDKPISTNPVHAVDVVLRHLPSMKYTPVGRSFFSAPEGYDHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIQFMCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYSLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYEADPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYAGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEVIQDLASMVRELLIQFYKSTRYKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKEYQPGITYIVVQKRHHTRLFCADRNERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADEFQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHHDTLRTMYFA"
misc_feature 1045..1329 /gene="LOC113136233" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 1357..1509 /gene="LOC113136233" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature 1510..1872 /gene="LOC113136233" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1666..1668,1711..1713,1753..1755,1765..1767, 1819..1821,1840..1842,1846..1848) /gene="LOC113136233" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 2005..3282 /gene="LOC113136233" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2416..2418,2428..2430,2464..2475,2482..2484, 2506..2508,2515..2517,2527..2529,2539..2541) /gene="LOC113136233" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2620..2622,2626..2628,2836..2838,3250..3252) /gene="LOC113136233" /note="active site" /db_xref="CDD:240015" ORIGIN
ttcacagtgttgtagacgtagagctacgtttaggtgaaggcggagttggctcttctgacgtctggtgacacggagcccacctcttcctgtcggtgtcaggcaacttcaccatatttagctggcttgcagtagctccgaagagttgatctgtcaaccaggctggaaatattgacacttatcaggggatacagtccggcgttgacaggtttatgttggcactgggatactaactacagaagacgaggactttgggatacggtgcttgagaaacggtgccgcgtcaacggctgtttttaaggcgataaaagtaacgttagccgtcgtctgccagaattccaactaacgttatccaacagccgagctagccagctagctaattactgtagctaccccgacgctggaagtgccgtagattcgaatttatgtcattgttgttgctgctcagctatagggaggaattcatttggactcgatgaccccgctgggatgatatcctgacagctcctccgctccgttccagacactttcttaagcctggctagcgagctaactcggctaactagcgtagcgttagcggccagcagttttctccgtggcagtgaaatccgattggatacgtttaccgtgtgcgaacggcgctgtgcggtgacgacgaggaccctcggccggcgaaacgatccctttgacgctccgcaggaaggggagctaggtgctcggccactcagcgctgcacaggcggtgatctgcctaagcagacaccgggtttaacggaggacgaatcccaaacgtttaactgtgatccgggaagtgaaccgggcagggacctcatgaatggaaatcggaacaggagccgttggggcccagtccctgttctccatgcctcggcggcctggctatggcaccatgggaaaacccatcaagctgttggccaactgcttccaggtggagatccccaagatggatgtctacctctatgaggtggacatcaagcctgacaagtgcccacgcagagtcaacagggaggtagttgactctatggtgcagcacttcaaggtaacaatctttggggatcgcaggccagtctatgatggaaagaagagcctatacacagccaacccactgcctgtggcaccaacaggggtggacctggatgtcactttaccaggtgagggaggcaaagatcgtcccttcaaagtttccatcaagtttgtgtctctggtcagctggcacatgctccatgaggtgctgactggccgcagtatgcctgagcccctggagctggacaagcccatcagcaccaaccctgtacatgcagtagatgtggtgctgcgacaccttccctccatgaagtacactccggtgggtcgatccttcttctcagctccagagggctatgaccatcccctgggaggtgggagggaggtttggtttggcttccatcagtctgtacgccctgccatgtggaagatgatgctaaatattgatgtgtctgcaactgccttctacaaggcccagccagtcatccagttcatgtgtgaagtgctggatatccacaacatagacgagcagcctcgccctctcactgactcacatcgagtcaaattcaccaaagaaatcaaaggtctgaaggtggaggtgacgcactgtggaaccatgcggaggaagtaccgtgtctgcaatgtcacccgtcggccagctagccatcaaacgttccctctgcagttggaaaatggtcagactgtagagcgtactgtagcccagtacttcagggagaagtacagcctacagcttaagtacccacatttgccctgtctacaggtgggccaggaacaaaagcatacctatctgcccctggaggtgtgtaatattgtagctggtcaacggtgcatcaagaagctgacagataatcagacctccactatgatcaaagccactgctcgctctgcacctgatagacaagaggagatcagcaggctggtgcgcagtgccaactatgaggcagacccatttgtgcaggaattccagttcaaggtgcgcgacgagatggcccacgtgacggggcgagtgctacccgcccccatgctgcagtacggcggcaggaaccgcactgttgccacacccagtcacggggtgtgggacatgagagggaagcagttccacactggggttgagatcaagatgtgggccattgcctgcttcgccacacagaggcagtgtcgggaagaaatcctaaagggctttacagaccagctacggaaaatttccaaggatgctgggatgcctattcaaggccagccatgcttctgtaaatatgcccagggagcagacagtgtggagccaatgttcagacacctgaagaacacctatgctggactgcagctcatcatcgtcatcttgccgggaaagactcctgtctacgcggaggttaagcgtgtgggagacaccctcttgggcatggccacccagtgtgttcaggtgaagaacgtggtaaagacatcacctcagactctctcaaacctctgcctcaagatcaatgtgaagctgggaggcattaacaacattctggtgcctcaccaacgaccatcagtgtttcagcagcctgttatctttttgggagcagatgttacacatccaccagctggagatggaaagaagccttcaattgcagcagtggtaggcagcatggatgcccaccccagcaggtattgtgccactgtgcgggtccagaggcccagacaggaagtcatccaggacctggcctccatggtgcgggaattactcattcagttctacaagtcaacccgctacaagcccaccaggatcattttctacagggatggagtttcagaaggccagttcagacaggtgctgtactatgagctgctggccattcgtgaggcctgtatcagcctggaaaaagagtaccaaccaggcattacctatatagttgtgcaaaaacgccaccatacacgcctcttctgtgccgaccgcaatgaaagagttggacgtagtggaaacattcctgccggtactaccgtggatacagacatcacgcatccttacgagtttgacttttacctctgcagtcacgctggaatacagggcaccagtcggccctcccactatcatgtactgtgggatgacaattgttttaccgcggatgagttccagctgctcacctaccagttgtgccacacatacgtgcgctgtacccgctcagtctccatccctgcgccagcctactatgcccatctggtggccttccgtgcccgctatcatctggtggacaaagaacatgatagcgctgagggcagccatgtgtctggtcagagtaacggtcgggacccccaggcgctggccaaagctgttcagattcaccacgacaccctgaggaccatgtacttcgcctgagctgcaccaacgattgccacctttaacacacacaaacacatacagacacaaccatacacacctggcttgccagtcaaggaatcctcataggtgcaagtctcgcccgccccacatgcctagtcaatccggacctgacactgtgcagaggaaagcagggaggagagaggggaggaggcacccccacactggactgaggatgcaaacgctgctttaaaaacaaacaagaaagaaactcagcactattatgcaatattaaaccagccaactagtttattttcacccttatcaggtccccaattcattgctcctcctatgtcttctgtctcctttacttgtggcctagttgatgatgttcttgtttgtttttacttttttcttcctttggcactatctttctttatagtcccctaatctacccctttgccatctacagtacctcaaatcagtttgagcaggagcacttttacattctgttagtttgttgtagtttgttattgattctccctagtgtctgaaatgaaggagcaggaaggggagggtcagaagcagtgtctgatttcttttggaatatagttatttcattggggtagaggtcctcccaattgtcactttttttctttttcctcttgcttcctcagttctgtcacttttctccagtgtgtgaaatcaccagtggtatggagcaacctgttcttttgagcgcactgccacctgttggcaacgaggtataaatgcccccttaaagtcacaacaaggagtttttatcaacactttcagatcagttctgttctgccacagatacatagaagtcagctgtcacatttgaacctgggcagtttatattaactgatatatcctcagtatggattttatttaaagtataacactgttatttgactctggagttatttttcttctacattatgtgaaactttttttttaatcatttaatcatgtaagcttttgtttttaatcctaatagtcatcatgcattcttttccctcagagcttatctcacatttccttctcttgagtttgaggtggtggttacgtaaagattatgtcagtggtttcctctagtgcaataattagttgaacgaagggaagaggattttgggggacttaagcaactctaaagaacagttacacatttcattttaaagtgagtgtccttgaaaggagaaaagtttgctgcttacaaggcacttttcattaaaaagatgcttaatgagtttgcccttgctgggcagaaattgttcaactgcagttttggtgattttttttttttttttttttttcatatttttacttgaattgaaggatttcatgctcctctgtggcatgagaatattttatcagcgtttatcaatggtcataattttagagttattgaacatcagtttgctaatgaggcagatttttttttttttatttctaagaatttgccattttggacaacaaagctttgttgtctgatagcagcaaagcggagtctaaaggccataaagaggtagtattcaagtgcctggtggaagtttaagcatttaataattgaaagatgcatagcttattatagggatctagttttagtgggtaaaagaatg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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