2024-03-29 11:10:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026087134 1262 bp mRNA linear VRT 08-AUG-2018 DEFINITION PREDICTED: Apteryx rowi vimentin (VIM), mRNA. ACCESSION XM_026087134 VERSION XM_026087134.1 DBLINK BioProject: PRJNA484763 KEYWORDS RefSeq; includes ab initio. SOURCE Apteryx rowi (Okarito brown kiwi) ORGANISM Apteryx rowi Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020450988.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Apteryx rowi Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 13% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1262 /organism="Apteryx rowi" /mol_type="mRNA" /isolate="R43461" /specimen_voucher="ROM:ORN:R43461" /db_xref="taxon:308060" /chromosome="Unknown" /sex="male" /tissue_type="blood" /dev_stage="adult" /country="New Zealand: Okarito, Westland" /collection_date="16-Jul-1993" /collected_by="Royal Ontario Museum" gene 1..1262 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 162 ESTs, 47 Proteins, and 89% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112976178" CDS 1..939 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_025942919.1" /db_xref="GeneID:112976178" /translation="
MLVGEWDKDSEEDWKKMVQDDQGGYDEQGCCQLRRYTQSLLVFWEQKFEKEEFKDVDNASLARLDLERKVESLQEEIVFLKKLHDEEIRELQAQLQEQHIQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQEANEYRRQIQSLTCEVDALKGSNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRINMPIPTFASLNLRETNIESQPMVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature <160..768 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
atgctggttggagaatgggacaaagacagtgaggaagactggaagaagatggttcaagatgatcaaggtggctatgatgagcaaggttgttgccagctaagaagatacactcagtctctgttagtattctgggaacagaagtttgaaaaagaagaattcaaggatgttgacaatgcctctctggcacgtcttgatctggagcgcaaagttgagtccctgcaagaagagattgtgttcttgaagaagcttcatgatgaggaaatccgagaattgcaggcccaactccaggaacagcacatccaaattgatatggatgtttctaagcctgatcttactgctgccctgcgtgatgttcgccaacagtatgaaagcgttgctgctaagaatcttcaggaagctgaagaatggtacaagtccaaatttgcagatctctctgaagctgctaataggaacaacgatgccctgcgccaggccaaacaagaagctaatgaataccgcagacagattcaatctctcacctgcgaagttgatgctcttaaaggaagcaatgaatccctggagcgccaaatgcgtgaaatggaggagaattttgctgttgaagctgctaactaccaagacactattggccgtctgcaggatgagattcaaaacatgaaggaagaaatggctcgccatcttcgtgagtaccaggacctgctgaatgtaaagatggctcttgatattgagattgccacctacagaaaactgctggagggagaagagagcaggattaacatgcctattccaacctttgcttctctgaacctgagagaaaccaacattgagtctcagccaatggttgacactcactcaaagaggacactcctaattaagactgttgaaactagagatggacaggttattaatgaaacttcccagcatcatgatgacttggagtaaaactgaagtgatgatgaataattaatgcaggagatcttcttaccagcaagatttaaaaagtccatgtcttaaaggaagaaacagctttcaagtgcctttctgcagttttcccatgagcgcaagattattctgctaagaaataggtcttagatcttgcaaactgactctccctgaaggattagtttacagcagagtctagtttacaaatagcaatatcttgtgctgcaatactgttttttaagtatctgaatctaataaaaatgctttttccagcacagtatgagcaacctgtcgctacttcaaataaatctttggaaaatggc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]