2024-04-20 05:41:26, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_026015970 1828 bp mRNA linear MAM 30-JUL-2018 DEFINITION PREDICTED: Vulpes vulpes vimentin (VIM), mRNA. ACCESSION XM_026015970 VERSION XM_026015970.1 DBLINK BioProject: PRJNA482864 KEYWORDS RefSeq. SOURCE Vulpes vulpes (red fox) ORGANISM Vulpes vulpes Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_020356439.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Vulpes vulpes Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.1 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1828 /organism="Vulpes vulpes" /mol_type="mRNA" /strain="TameXAggressive cross" /db_xref="taxon:9627" /chromosome="Unknown" /sex="male" /tissue_type="blood" /dev_stage="adult" gene 1..1828 /gene="VIM" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:112932963" CDS 106..1506 /gene="VIM" /codon_start=1 /product="vimentin" /protein_id="XP_025871755.1" /db_xref="GeneID:112932963" /translation="
MSTRSVSSSSYRRMFGGPGTGSRPSSTRSYVTTSTRTYSLGSALRPSTSRSLYASSPGGAYATRSSAVRLRSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELKDLFTNYIDKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMXLPGGAREEMLQREEAESTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQDQHVQIDMDVSKPDLTAALRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRIALPLPNFSSLNLRETNLDSLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE"
misc_feature 145..408 /gene="VIM" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 409..1335 /gene="VIM" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
gcagccgcgcgcccgccgcccgcagccaccgcgccctcgctcgccggtccccccgagccggtccgtgccgccgcagccgcgcagcccgccgccgccctccgcaccatgtccaccaggtctgtgtcctcgtcctcctaccgcaggatgttcggcggcccgggcaccgggagccggccgagctccacgcggagctacgtgaccacgtccacccgcacctacagcctgggcagcgcgctgcgccccagcaccagccgcagcctctacgcctcgtccccgggcggcgcgtacgccacgcgctcctccgcggtgcgcctgcggagcagtgtgcccggcgtgcgtctgctgcaggactcggtggacttctcgctggccgacgccatcaacaccgagttcaagaacacgcgcaccaacgagaaggtggagctgcaggagctgaaggacctcttcaccaactacatcgacaaggtgcgcttcctggagcagcagaacaagatcctgctggccgagctcgagcagctcaagggccagggcaagtcgcgcctgggggacctctacgaggaggagatgcgggagctgcgccggcaggtggaccagctcaccaacgacaaggcccgcgtcgaggtggagcgcgacaacctggccgaggacatcatgnctctgcctgggggagcgcgggaggagatgctccagagagaggaagccgagagcaccctgcagtctttccgacaggatgttgacaatgcttctttggcacgtcttgaccttgagcggaaagtggaatccttgcaagaagagattgcctttttgaagaaactacatgatgaggaaatccaggagctgcaggcccagattcaggaccagcatgtccaaatcgatatggatgtttccaagcctgacctcacggctgccctgcgtgatgtacgccagcaatatgaaagcgtggctgccaagaaccttcaggaggccgaggaatggtacaagtccaagtttgccgacctctctgaggctgctaaccggaacaatgatgccctgcgccaggcgaagcaggagtcaaatgagtaccggagacaggtgcagtccctcacctgcgaagtggatgcactcaaagggactaatgagtctctggaacgccagatgcgtgaaatggaagagaactttgccgtcgaagctgctaactaccaagacactattggccgcctgcaggatgagattcagaacatgaaggaagaaatggctcgtcaccttcgggagtaccaggacctgctgaatgttaagatggctcttgacattgagattgccacctacaggaagctgctggaaggcgaggagagcaggattgctctgcctcttccaaacttttcttccctgaacctgagggaaaccaacctggattcactccctctggttgacactcactcaaaaagaacgcttctgattaagacggttgaaactagggatggacaggttatcaacgaaacttctcagcatcatgatgaccttgagtgaagcttgcccagattcggtgcagcaattattaccagcaagaataaaaaaaaagaaatccgtatcttaaagaaacagctttcaagtgcctttctgcagtttttcaggagcgcaagatagatttggaattaggaataacctctagttcttaagaaccaacactcttaaaagatttaggagaaagtttacaacataatctagtttacaaagaaaacttgtgctagaatactttttaaaaagtatttttgaataccattaaaactgcttttttccaacaagtatctgaccaacttgtttctgcttcaataaatctttggaaaactct
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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