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2024-03-28 18:04:25, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025703184             636 bp    mRNA    linear   PLN 11-JUL-2018
DEFINITION  Aspergillus vadensis CBS 113365 endo-1,4-beta-xylanase 3
            (BO88DRAFT_343350), partial mRNA.
ACCESSION   XM_025703184
VERSION     XM_025703184.1
DBLINK      BioProject: PRJNA479920
            BioSample: SAMN05661105
KEYWORDS    RefSeq.
SOURCE      Aspergillus vadensis CBS 113365
  ORGANISM  Aspergillus vadensis CBS 113365
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C.,
            Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Kuo,A., Riley,R., Clum,A.,
            Nolan,M., Lipzen,A., Salamov,A., Henrissat,B., Wiebenga,A., De
            Vries,R.P., Grigoriev,I.V., Mortensen,U.H., Andersen,M.R. and
            Baker,S.E.
  CONSRTM   DOE Joint Genome Institute
  TITLE     The genomes of Aspergillus section Nigri reveals drivers in fungal
            speciation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 636)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUL-2018) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 636)
  AUTHORS   Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A.,
            Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C.,
            Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Henrissat,B., Wiebenga,A., De
            Vries,R.P., Mortensen,U.H., Andersen,M.R., Baker,S.E.,
            Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2016) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_020292053).
            
            ##Metadata-START##
            Organism Display Name :: Aspergillus vadensis CBS 113365 v1.0
            GOLD Stamp ID         :: Gp0047311
            ##Metadata-END##
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Aspergillus vadensis CBS 113365"
                     /mol_type="mRNA"
                     /strain="CBS 113365"
                     /culture_collection="CBS:113365"
                     /type_material="culture from type material of Aspergillus
                     vadensis"
                     /db_xref="taxon:1448311"
                     /chromosome="Unknown"
     gene            <1..>636
                     /locus_tag="BO88DRAFT_343350"
                     /db_xref="GeneID:37207776"
     CDS             1..636
                     /locus_tag="BO88DRAFT_343350"
                     /note="Endo-1,4-beta-xylanase A; Xylanase A;
                     1,4-beta-D-xylan xylanohydrolase A; Xylanase I;
                     Endo-1,4-beta-xylanase 3; Xylanase 3; 1,4-beta-D-xylan
                     xylanohydrolase 3; Xylanase C"
                     /codon_start=1
                     /product="endo-1,4-beta-xylanase 3"
                     /protein_id="XP_025561877.1"
                     /db_xref="GeneID:37207776"
                     /db_xref="InterPro:IPR001137"
                     /db_xref="JGIDB:Aspvad1_343350"
                     /translation="
MKVTAAFAGLLVTAFAAPVPEPALVSRSAGINYVQNYNGNLGDFTYDESAGTFSMYWEDGVSSDFVVGLGWTTGSSNAITYSAEYSASGSASYLAVYGWVNYPQAEYYIVEDYGDYNPCSSATSLGTVYSDGSTYQVCTDTRTNEPSITGTSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQVVAVEAWSGAGSASVTISS"
     misc_feature    88..618
                     /locus_tag="BO88DRAFT_343350"
                     /note="Glycosyl hydrolases family 11; Region:
                     Glyco_hydro_11; pfam00457"
                     /db_xref="CDD:425692"
ORIGIN      
atgaaggtcactgcggcttttgcaggacttttggtcacggcattcgcggctcctgtcccggaacctgctctggtgtcgcgaagtgccggtattaactacgttcaaaactacaacggcaaccttggtgatttcacctacgacgagagtgccggaacattttccatgtactgggaagatggagtgagctccgactttgtcgttggtctgggctggaccactggttcttctaacgctatcacctactctgccgaatacagcgcttctggctccgcttcctacctcgctgtgtacggctgggtcaactatcctcaggctgagtactacatcgtcgaggattacggtgattacaacccttgcagctcggccacaagccttggtaccgtgtactctgatggaagcacctaccaagtctgcaccgacactcgaacaaacgaaccgtccatcacgggaacaagcacgttcacgcagtacttctccgttcgagagagcacgcgcacatctggaacggtgactgttgccaaccatttcaacttctgggcgcagcatgggttcggcaatagcgacttcaattatcaagtcgtggcggtggaagcatggagcggtgctggcagcgccagtgtcacaatctcttcttga
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]