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2024-03-29 01:44:37, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025536602             701 bp    mRNA    linear   PLN 29-DEC-2023
DEFINITION  Aspergillus eucalypticola CBS 122712 endo-1,4-beta-xylanase 3
            (BO83DRAFT_446547), partial mRNA.
ACCESSION   XM_025536602
VERSION     XM_025536602.1
DBLINK      BioProject: PRJNA479907
            BioSample: SAMN05660444
KEYWORDS    RefSeq.
SOURCE      Aspergillus eucalypticola CBS 122712
  ORGANISM  Aspergillus eucalypticola CBS 122712
            Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina;
            Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae;
            Aspergillus.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C.,
            Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Kuo,A., Riley,R., Clum,A.,
            Nolan,M., Lipzen,A., Salamov,A., Henrissat,B., Wiebenga,A., De
            vries,R.P., Grigoriev,I.V., Mortensen,U.H., Andersen,M.R. and
            Baker,S.E.
  CONSRTM   DOE Joint Genome Institute
  TITLE     The genomes of Aspergillus section Nigri reveals drivers in fungal
            speciation
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 701)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (28-DEC-2023) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 701)
  AUTHORS   Kuo,A., Riley,R., Clum,A., Nolan,M., Lipzen,A., Salamov,A.,
            Vesth,T.C., Nybo,J., Theobald,S., Brandl,J., Frisvad,J.C.,
            Nielsen,K.F., Lyhne,E.K., Kogle,M.E., Henrissat,B., Wiebenga,A., De
            vries,R.P., Mortensen,U.H., Andersen,M.R., Baker,S.E.,
            Grigoriev,I.V., Nordberg,H.P., Cantor,M.N. and Hua,S.X.
  CONSRTM   DOE Joint Genome Institute
  TITLE     Direct Submission
  JOURNAL   Submitted (15-DEC-2016) DOE Joint Genome Institute, 2800 Mitchell
            Drive, Walnut Creek, CA 94598-1698, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_020290289).
            
            ##Metadata-START##
            Organism Display Name :: Aspergillus eucalypticola CBS 122712 v1.0
            GOLD Stamp ID         :: Gp0047226
            ##Metadata-END##
            COMPLETENESS: incomplete on the 3' end.
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Aspergillus eucalypticola CBS 122712"
                     /mol_type="mRNA"
                     /strain="CBS 122712"
                     /type_material="culture from holotype of Aspergillus
                     eucalypticola"
                     /db_xref="taxon:1448314"
                     /chromosome="Unknown"
     gene            1..>701
                     /locus_tag="BO83DRAFT_446547"
                     /db_xref="GeneID:37058564"
     CDS             66..701
                     /locus_tag="BO83DRAFT_446547"
                     /note="Endo-1,4-beta-xylanase A; Xylanase A;
                     1,4-beta-D-xylan xylanohydrolase A; Xylanase I;
                     Endo-1,4-beta-xylanase 3; Xylanase 3; 1,4-beta-D-xylan
                     xylanohydrolase 3; Xylanase C"
                     /codon_start=1
                     /product="endo-1,4-beta-xylanase 3"
                     /protein_id="XP_025387135.1"
                     /db_xref="GeneID:37058564"
                     /db_xref="InterPro:IPR001137"
                     /db_xref="JGIDB:Aspeuc1_446547"
                     /translation="
MKATAAFAGLLVTAFAAPVPEPVLVSRSPGINYVQNYNGNLGDFTYDESAGTFSMYWEDGVSSDFVVGLGWTTGSSNPITYSAEYSASGSASYLAVYGWVNYPQAEYYVVENYGDYNPCSSATSLGTVYSDGSTYQVCTDTRTNEPSITGTSTFTQYFSVRESTRTSGTVTVANHFNFWAQHGFGNSDFNYQVVAVEAWSGAGSASVTISS"
     misc_feature    153..683
                     /locus_tag="BO83DRAFT_446547"
                     /note="Glycosyl hydrolases family 11; Region:
                     Glyco_hydro_11; pfam00457"
                     /db_xref="CDD:425692"
ORIGIN      
ccagcacaggcttctcttccagttgcatacatccattcaccagcattaatctttcttcaatcatcatgaaggctactgcggcttttgcaggtcttttggtcacggcattcgccgctcctgtcccggaacctgttctggtgtcgcgaagtcccggtatcaactacgtgcaaaactacaatggcaaccttggtgacttcacctacgatgagagtgccggaacattttccatgtactgggaagatggagtcagctccgactttgttgttggtctgggctggaccactggttcttctaaccctatcacctactctgccgaatacagcgcttctggctccgcttcctacctcgctgtgtacggctgggtcaactatcctcaggctgagtactacgtcgtcgagaattacggtgattacaacccttgcagctcggccacaagccttggtaccgtgtactctgatggaagcacctaccaagtctgcaccgacactcgaacaaacgaaccgtccatcacgggaacaagcacgttcacgcagtatttctccgttcgagagagcacgcgcacatctggaacggtgactgttgccaaccatttcaacttctgggcgcagcatgggttcggcaatagcgacttcaattatcaggtcgtggcggtggaagcatggagcggtgctggcagcgccagtgtcacaatctcttcttga
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]