2024-12-05 20:14:41, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XM_025497511 618 bp mRNA linear PLN 10-FEB-2020 DEFINITION Meira miltonrushii Isochorismatase hydrolase (FA14DRAFT_152158), partial mRNA. ACCESSION XM_025497511 VERSION XM_025497511.1 DBLINK BioProject: PRJNA479903 BioSample: SAMN02787052 KEYWORDS RefSeq. SOURCE Meira miltonrushii ORGANISM Meira miltonrushii Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Exobasidiomycetes; Exobasidiales; Brachybasidiaceae; Meira. REFERENCE 1 (bases 1 to 618) AUTHORS Kijpornyongpan,T., Mondo,S.J., Barry,K., Sandor,L., Lee,J., Lipzen,A., Pangilinan,J., LaButti,K., Hainaut,M., Henrissat,B., Grigoriev,I.V., Spatafora,J.W. and Aime,M.C. TITLE Broad genomic sampling reveals a smut pathogenic ancestry of the fungal clade Ustilaginomycotina JOURNAL Mol. Biol. Evol. (2018) In press PUBMED 29771364 REMARK Publication Status: Available-Online prior to print REFERENCE 2 (bases 1 to 618) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (10-FEB-2020) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 618) AUTHORS Mondo,S.J., Kijpornyongpan,T., Barry,K., Sandor,L., Lee,J., Lipzen,A., Pangilinan,J., Labutti,K., Hainaut,M., Henrissat,B., Grigoriev,I.V., Spatafora,J.W., Aime,M.C., Nordberg,H.P., Cantor,M.N. and Hua,S.X. CONSRTM DOE Joint Genome Institute TITLE Direct Submission JOURNAL Submitted (01-AUG-2016) DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020289943). ##Metadata-START## Organism Display Name :: Meira miltonrushii MCA 3882 GOLD Stamp ID :: Gp0091365 ##Metadata-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..618 /organism="Meira miltonrushii" /mol_type="mRNA" /strain="MCA 3882" /type_material="holotype of Meira miltonrushii" /db_xref="taxon:1280837" /chromosome="Unknown" gene <1..>618 /locus_tag="FA14DRAFT_152158" /db_xref="GeneID:37019292" CDS 1..618 /locus_tag="FA14DRAFT_152158" /codon_start=1 /product="Isochorismatase hydrolase" /protein_id="XP_025357034.1" /db_xref="GeneID:37019292" /db_xref="InterPro:IPR000868" /db_xref="JGIDB:Meimi1_152158" /translation="
MATRSIPRLEQSSSALFLCDIQERFTKAIHEFDNMAKASSKLLRGAQILEIPVFTTEQNSKALGSTVDVLKKDIPENSTIVDKTRFSMVLDDGTTDKWLRDHKVQNVMIVGIESHVCVLQTTLDLLKKGFNVFIIRDAISSCNKQEVPLAIERMRLAGATITTSESALFELMLDSKHPHFKAISGLIKTEKDSTKAALEALTSRI"
misc_feature 43..516 /locus_tag="FA14DRAFT_152158" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220" /db_xref="CDD:444760" misc_feature order(58..60,247..249,349..351) /locus_tag="FA14DRAFT_152158" /note="catalytic triad [active]" /db_xref="CDD:238245" misc_feature 334..339 /locus_tag="FA14DRAFT_152158" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238245" ORIGIN
atggcaaccagatcaattcctagacttgaacaatcttcaagcgctttgtttttgtgtgatattcaagaacgttttacaaaagcaattcatgaattcgataatatggcaaaagcatcttcaaaacttttgaggggcgctcaaatcttggagatcccagttttcacaactgaacaaaactcgaaagctcttggatcgacggtagacgttctcaagaaagatatcccagaaaattccacaatcgttgacaagacccgattcagtatggtattggacgatggaacaacagataaatggctacgcgatcacaaagttcaaaatgtgatgattgtcggaattgagagtcacgtatgcgtcttacaaacgacattggacttgctcaagaaaggcttcaacgttttcatcattcgtgatgcaatctcttcttgtaataaacaagaagttccacttgccatcgaaagaatgcgtttggctggcgctacaatcacaacatccgaaagcgctctgtttgaactgatgctagattcaaaacatccccatttcaaagctatcagtgggctaatcaagacggaaaaggacagtacaaaagccgctcttgaagcactcacatcacgtatttga
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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