2024-03-29 16:36:38, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025480531 684 bp mRNA linear PLN 06-JUN-2019 DEFINITION [Candida] duobushaemulonis uncharacterized protein (CXQ87_002009), partial mRNA. ACCESSION XM_025480531 VERSION XM_025480531.1 DBLINK BioProject: PRJNA479899 BioSample: SAMN08161465 KEYWORDS RefSeq. SOURCE [Candida] duobushaemulonis ORGANISM [Candida] duobushaemulonis Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Metschnikowiaceae; Metschnikowiaceae incertae sedis; Candida/Metschnikowiaceae. REFERENCE 1 (bases 1 to 684) AUTHORS Chow,N.A., Gade,L., Batra,D., Rowe,L.A., Loparev,V.N. and Litvintseva,A.P. TITLE Genome Sequence of the Amphotericin B-resistant Candida duobushaemulonii strain, B09383 JOURNAL Unpublished REFERENCE 2 (bases 1 to 684) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (06-JUN-2019) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 684) AUTHORS Chow,N.A., Gade,L., Batra,D., Rowe,L.A., Loparev,V.N. and Litvintseva,A.P. TITLE Direct Submission JOURNAL Submitted (18-DEC-2017) Mycotic Diseases Branch, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA 30329, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NW_020289895). COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..684 /organism="[Candida] duobushaemulonis" /mol_type="mRNA" /strain="B09383" /isolation_source="blood" /host="Homo sapiens" /db_xref="taxon:1231522" /chromosome="Unknown" /country="USA: Tennessee" /lat_lon="36.16784 N 86.77816 W" /collection_date="2011-09" /collected_by="Tennessee Department of Health" gene <1..>684 /locus_tag="CXQ87_002009" /db_xref="GeneID:37002009" CDS 1..684 /locus_tag="CXQ87_002009" /codon_start=1 /transl_table=12 /product="uncharacterized protein" /protein_id="XP_025334831.1" /db_xref="GeneID:37002009" /translation="
MLVDRLAHGQLRAMSQSRGRILHARSIYLHTGPRVAGLRRDPKEAFKTHQGVEYGSEEATSTIKQFLANYSIPEEMARQVLTHKSFGNGIKAYNEKLVVMGSKVLNLFLAKHVIEQPTENENAINGKNLDVLGTRVSKELGSKTALGVFAKQHNLNQTMFWKSHNHHLSFEASGEMKISAHVMYALVGAVAFVHGKKMAEQFVREKLLTGEKSLEAVTAQLLQENRV"
misc_feature 220..624 /locus_tag="CXQ87_002009" /note="Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional...; Region: RIBOc; cl00258" /db_xref="CDD:444793" misc_feature order(283..288,295..300,307..309,316..321,328..333, 337..345,370..372,571..573,598..600) /locus_tag="CXQ87_002009" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238333" misc_feature order(283..285,292..294,304..306,541..543,550..552) /locus_tag="CXQ87_002009" /note="active site" /db_xref="CDD:238333" misc_feature order(292..294,541..543,550..552) /locus_tag="CXQ87_002009" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238333" ORIGIN
atgttggtggacagactagcacacggccagctccgagccatgagccagtcacgtggcaggattctccatgcccgctccatctatcttcacacaggcccccgcgtggcaggtctccgcagagaccccaaggaggctttcaagacccaccagggcgtcgaatacggttctgaagaggccaccagcaccatcaagcaatttctagccaattacagcattccagaggaaatggcccgccaggtgctcacgcacaagtcgttcggtaacggtatcaaggcgtacaatgaaaaactcgtcgttatgggcctgaaggtgctcaatctcttcttggccaagcatgtcattgagcagcccacggaaaacgaaaacgccatcaacggcaagaaccttgatgtcttgggcacccgtgtctccaaggagctcggaagcaaaaccgcccttggtgttttcgccaaacagcacaacctcaaccagacgatgttctggaaactgcacaaccaccatcttctgtttgaagccagtggcgaaatgaagatcagcgcccacgtcatgtatgcgcttgtaggagctgtggcgttcgtccacggcaagaaaatggccgagcagtttgtccgtgagaagctcttgacgggcgagaagctgcttgaggccgtcacggcgcagttgctccaggagaaccgcgtctag
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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