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2024-03-28 19:24:08, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_025480531             684 bp    mRNA    linear   PLN 06-JUN-2019
DEFINITION  [Candida] duobushaemulonis uncharacterized protein (CXQ87_002009),
            partial mRNA.
ACCESSION   XM_025480531
VERSION     XM_025480531.1
DBLINK      BioProject: PRJNA479899
            BioSample: SAMN08161465
KEYWORDS    RefSeq.
SOURCE      [Candida] duobushaemulonis
  ORGANISM  [Candida] duobushaemulonis
            Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina;
            Saccharomycetes; Saccharomycetales; Metschnikowiaceae;
            Metschnikowiaceae incertae sedis; Candida/Metschnikowiaceae.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Chow,N.A., Gade,L., Batra,D., Rowe,L.A., Loparev,V.N. and
            Litvintseva,A.P.
  TITLE     Genome Sequence of the Amphotericin B-resistant Candida
            duobushaemulonii strain, B09383
  JOURNAL   Unpublished
REFERENCE   2  (bases 1 to 684)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-JUN-2019) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 684)
  AUTHORS   Chow,N.A., Gade,L., Batra,D., Rowe,L.A., Loparev,V.N. and
            Litvintseva,A.P.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-DEC-2017) Mycotic Diseases Branch, Centers for
            Disease Control and Prevention, 1600 Clifton Road, Atlanta, GA
            30329, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. This record is derived from an annotated genomic
            sequence (NW_020289895).
            COMPLETENESS: incomplete on both ends.
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="[Candida] duobushaemulonis"
                     /mol_type="mRNA"
                     /strain="B09383"
                     /isolation_source="blood"
                     /host="Homo sapiens"
                     /db_xref="taxon:1231522"
                     /chromosome="Unknown"
                     /country="USA: Tennessee"
                     /lat_lon="36.16784 N 86.77816 W"
                     /collection_date="2011-09"
                     /collected_by="Tennessee Department of Health"
     gene            <1..>684
                     /locus_tag="CXQ87_002009"
                     /db_xref="GeneID:37002009"
     CDS             1..684
                     /locus_tag="CXQ87_002009"
                     /codon_start=1
                     /transl_table=12
                     /product="uncharacterized protein"
                     /protein_id="XP_025334831.1"
                     /db_xref="GeneID:37002009"
                     /translation="
MLVDRLAHGQLRAMSQSRGRILHARSIYLHTGPRVAGLRRDPKEAFKTHQGVEYGSEEATSTIKQFLANYSIPEEMARQVLTHKSFGNGIKAYNEKLVVMGSKVLNLFLAKHVIEQPTENENAINGKNLDVLGTRVSKELGSKTALGVFAKQHNLNQTMFWKSHNHHLSFEASGEMKISAHVMYALVGAVAFVHGKKMAEQFVREKLLTGEKSLEAVTAQLLQENRV"
     misc_feature    220..624
                     /locus_tag="CXQ87_002009"
                     /note="Ribonuclease III C terminal domain. This group
                     consists of eukaryotic, bacterial and archeal ribonuclease
                     III (RNAse III) proteins. RNAse III is a double stranded
                     RNA-specific endonuclease. Prokaryotic RNAse III is
                     important in post-transcriptional...; Region: RIBOc;
                     cl00258"
                     /db_xref="CDD:444793"
     misc_feature    order(283..288,295..300,307..309,316..321,328..333,
                     337..345,370..372,571..573,598..600)
                     /locus_tag="CXQ87_002009"
                     /note="dimerization interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:238333"
     misc_feature    order(283..285,292..294,304..306,541..543,550..552)
                     /locus_tag="CXQ87_002009"
                     /note="active site"
                     /db_xref="CDD:238333"
     misc_feature    order(292..294,541..543,550..552)
                     /locus_tag="CXQ87_002009"
                     /note="metal binding site [ion binding]; metal-binding
                     site"
                     /db_xref="CDD:238333"
ORIGIN      
atgttggtggacagactagcacacggccagctccgagccatgagccagtcacgtggcaggattctccatgcccgctccatctatcttcacacaggcccccgcgtggcaggtctccgcagagaccccaaggaggctttcaagacccaccagggcgtcgaatacggttctgaagaggccaccagcaccatcaagcaatttctagccaattacagcattccagaggaaatggcccgccaggtgctcacgcacaagtcgttcggtaacggtatcaaggcgtacaatgaaaaactcgtcgttatgggcctgaaggtgctcaatctcttcttggccaagcatgtcattgagcagcccacggaaaacgaaaacgccatcaacggcaagaaccttgatgtcttgggcacccgtgtctccaaggagctcggaagcaaaaccgcccttggtgttttcgccaaacagcacaacctcaaccagacgatgttctggaaactgcacaaccaccatcttctgtttgaagccagtggcgaaatgaagatcagcgcccacgtcatgtatgcgcttgtaggagctgtggcgttcgtccacggcaagaaaatggccgagcagtttgtccgtgagaagctcttgacgggcgagaagctgcttgaggccgtcacggcgcagttgctccaggagaaccgcgtctag
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]