2024-04-19 10:59:02, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_025184285 4811 bp mRNA linear VRT 04-JUN-2018 DEFINITION PREDICTED: Pelodiscus sinensis NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X5, mRNA. ACCESSION XM_025184285 VERSION XM_025184285.1 DBLINK BioProject: PRJNA221645 KEYWORDS RefSeq. SOURCE Pelodiscus sinensis (Chinese soft-shelled turtle) ORGANISM Pelodiscus sinensis Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Trionychia; Trionychidae; Pelodiscus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005854923.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Pelodiscus sinensis Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4811 /organism="Pelodiscus sinensis" /mol_type="mRNA" /isolate="Daiwa-1" /db_xref="taxon:13735" /chromosome="Unknown" /sex="female" /country="Japan: Saga" gene 1..4811 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:102461156" CDS 213..3368 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X3" /protein_id="XP_025040070.1" /db_xref="GeneID:102461156" /translation="
MFYEVFFSRAEQNSRAVKICLEDITSNVATNRFVWLEDIQALTAETFRTDKKPDPANWEYKSLYRGDIARYKRKGDFCLGIDLKKQRITWEGPMVEKKQSHKRPERYFTKNSVQLLRAGGIPVYSKSQTYSSDPSTFILVSQVDSDAPPATTRVNPLGIYDPLTTLWLQGKGPPEYETSKQQASQETSENVNSFLMAKVEDYNKRVRENPRDVHTWMEFVSFQDELMRGPSLYAFKEGEQEIRRKSFKLILEKKLSILERAIESNPNEVDLKLAKLNLCTEFWEPSTLIKEWQKLVFLHPNNPVLWQKYLLFCQSQFSTFSVSKVNSLYGKCLSTLAAIEDGSMVSHPVLPGTEEAMLAIFLQQCHFLRQTGHSEKAVSLFQALVDFTFFKPDNVKDLPTRGQVEFFEPFWDSGEPRFGEKGAKGWKSWMHQQEKGGWIVINKPDEDEEDVDEDPEIKDKTLPKWQIWLDVECSRETRHWMPWRPDKTKKQSEEDCEDPERQVLFDDLGPSLIRLSSPDLQFQLLYSFLQFLGVPCERNLFPSNLYIAMDENSIFDAGHSEGPLTSFDSLLSGVNSIGHMDTMIRERQRIGHCKEGEEFLQNVFHFILPMFSGKEKSNLSVCWLQYEISKVVQCLQVKNKKKLKSQGKKSKKLAKNLLKESENRNSLSLWKLYAYLEWLLGNTEDSRKVFDTALCLAGTDGMRSTQLCNLSLFYASLEVELLESLEETVMSRAVHILTKVTESGPYVPYTGQVLSVNILKARKAYEHALKDYLNESPVTNWDQASGSSQMVSLVGCYALFQYLTVGIDAAVFIYRNISEKLKDFASQKFESIGENLGVQNFPTALEAVTLMHTNLLRYHMKVSIYPLNPLREALMEALKLYPSNQSLWRSYIQIQSKSHNASKARRFFDSVARSTKFLEPWLFAIQAEMMRKKLVESVQRVDVGEIYSTIPETGLTNRIKALFEHAIQSENGAHCPLLWRMYLNFLFSLGNKERSKGLFYKALQNCPWAKVLYMDAIEYFPDQLQEILDLMTEKELRIRVPIEELELLLED"
misc_feature 348..632 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(348..374,381..386,396..401,405..407,411..455, 462..470,474..482,504..512,522..527,531..536,543..563, 588..599,609..632) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 816..1811 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
agaaaagaaaaaagaaaactagagatgaatcaagtaacagtgagtcagacttggatactgagtgtgtgaagggtaaacctcgaggaagtaacacaaaccctgaaagagaagtagcagcattaaaattagattaaatttccattttaactgtttttgaagagaacaaagaacacatacatatttttattgttgcatctgaaaaatgatgaggaatgttttatgaagtatttttctccagagctgaacagaatagcagagcagtgaaaatatgtctagaagatataacatcaaatgttgccaccaatcgctttgtttggcttgaggatattcaggctttgacagcagaaaccttcagaacagacaagaaaccagaccctgcaaactgggaatacaagtcactatatcgtggcgacatagcaagatacaagaggaagggtgacttctgccttggtattgacctaaagaaacaacgtataacttgggaaggtcccatggtagaaaagaaacagtcccacaagcgacctgaacgctacttcacaaaaaacagtgtgcagttactgcgtgcaggtggaattccagtttacagtaaaagccaaacttattcatctgacccaagcacctttatattagtttcacaagtggacagcgatgctcctcctgcaacaaccagggtgaatcctctggggatttatgatccattgactactctgtggttgcaaggaaaaggtcccccagagtatgagacttcaaagcaacaggcatcccaagaaaccagtgaaaatgttaactcttttctaatggcaaaagtggaagactataataagagggtcagagaaaacccaagagatgtccacacttggatggaatttgtttcttttcaggatgaactaatgagaggacccagcctttatgccttcaaggagggagagcaggaaataaggagaaaatcattcaagctaatactagaaaagaaactgtcaattttagagagagctattgaaagcaacccaaatgaggttgatctgaagcttgccaagctgaacctttgtacagaattctgggaaccatcaactttgatcaaagaatggcagaaactggtttttttgcatcccaataatccagttttatggcagaaatatctcttattttgtcaaagtcagttcagtaccttttcagtttcaaaagtcaatagtttatatggaaaatgtttgagcactttggcagctatagaggacggcagtatggtatcacatcctgtactacctggcacagaagaagctatgttagctatctttcttcagcagtgccattttcttagacagacgggccattctgagaaagctgtgtctttgttccaagccctggttgatttcaccttctttaaacctgacaatgtaaaagatctgccaacaagaggacaggtggagttctttgaaccattttgggacagtggagagcctcggtttggagaaaaaggagcaaaaggctggaaatcatggatgcatcaacaagaaaagggaggctggattgttatcaataaacctgatgaagatgaggaagatgtagatgaagatccagaaataaaggataaaactctacccaaatggcaaatttggcttgacgttgaatgttcccgtgaaacaaggcattggatgccttggcgacctgacaaaactaaaaaacagagtgaagaagattgtgaagacccagagagacaggtattatttgatgatcttgggccatctttaatcagactttctagtccagatcttcagtttcagctgctatattcatttctacaatttttgggagtcccatgtgagcgtaatctctttccttcaaatctctatatcgctatggatgagaatagcatctttgatgctgggcattctgaagggccactgacttcttttgactcactgctttctggagtcaatagtattggccatatggatacaatgatcagagagagacagcgcataggacactgtaaggaaggagaggagttcctacagaatgtctttcatttcatactgccaatgttttcaggaaaggaaaagtcaaacctgtctgtctgttggctacaatatgaaatctcaaaggttgttcagtgtctccaagtgaaaaacaagaagaaactgaagtcacaggggaagaagagcaaaaaactagccaagaatctccttaaggaatctgaaaaccgaaacagcctttccctctggaaactgtatgcttacttggagtggttacttggcaacacagaagattctagaaaagtgtttgatacagctctttgtttggcgggaactgacgggatgagaagtacccaactctgtaatctgagcttgttttatgcttcactggaagtggagctgttagagagtctggaggaaactgttatgtcacgtgctgtacatatattgaccaaagtgactgaaagtggaccatatgtgccttatactgggcaggtgttatctgtgaatatcttgaaagctcggaaagcatatgagcatgcattgaaagattatttaaatgaaagccctgtcactaactgggatcaggccagtggttctagccaaatggttagtttagttggttgttatgcgcttttccagtatttgactgttgggattgatgctgctgtattcatatatagaaatatttctgaaaagcttaaagattttgcttcacagaagtttgaaagtattggagaaaatcttggcgttcagaattttcccactgcccttgaagctgtcacactcatgcacacaaatttactcaggtaccatatgaaagttagcatttatcctttaaatccactgcgagaggcactaatggaagctttgaagctgtatcctagcaaccagtctctttggagatcatatatccagatccaaagcaagtctcacaacgctagcaaagcacgaagattttttgatagcgtcgcaaggtctaccaagttcctagagccatggctgtttgcaatccaagccgagatgatgagaaagaagcttgttgagagtgtccaaagagtagatgttggagaaatatattcaacaattcctgaaaccggattaacgaatcggatcaaagctttatttgaacatgcaattcagagtgaaaatggtgcccattgtccgttgctgtggagaatgtatttgaattttctgttttctctcggaaataaagaaaggagcaaaggactattttacaaagctcttcagaactgtccctgggcaaaggtgctgtatatggatgcaatagaatattttccagatcagctgcaagagatcctagatctaatgactgaaaaagaattgagaataagagtacctatagaagaactggaactgctactggaagattaaaagaagatggtgcaagaacaaaaaccaaaacaatacacaaagataagataaggggggaagaaagaaagttgatattcaaaagaccaactataatggtctgtcttcaacaattatcttttattagaacttcaatggaccatgcacgtatttttcttactaagaataatttgttaaaaacgtagctattaatattccacacagctagctgtaaatgtgtaaatttgttccacatcttgtagtggggtgcttttatacatgtaaatacatctatttttctggaaaatacagcagaatccacaaaattatacctaccaataattaatttgccattgagccacacctgcaactcgtatgctcctatttaatacagccattccctttaattcagtggaatgtcaaggaagcacaggaagtacacctctgtcaaatgtatgctttacaatcttctgttgtcaacaggctaaatatgtcctggttggtgtggatgtgtatctaaatatccacatatttcagttctagtgtcttgctgtctatacaaaacaagaagattagtaaaactcttgaggaaaatatccagtcagacaattagctcaattgataaactattgttaaaagtcaaaaccttttttggcaagatatagggttgactttgcatatgtatatgatgtgacaattctaatgtaaatatttataaaaatacttattttaatttagttggttcttgaattttttatttttttttaaatgttaattttggtgaggaaaatgtttacacctttattctaatatctcttttctagcagcaaattttttttgttttaaatatgcaaactattataattaacttcccttttcctcagcatacattggggaattgtcatgagacaaattcctacctactatctctaggtatcatgaggtattctgagatgctctttcctaatgtggtttctcgggttattagcttatttatagcagtgttttacaggctactcactactgctataaaatagaatatggctcctgtccagtccagtgctcatcagctgatgagatctgttagaatttcaacacaggctcttaagaccattttagattgcattgtaactcatttatccatctttgtgaacttattttgaaaatagaggatgtgctaatgtttaaccatgttcttaaattttataaaaattctgtggcagcttttactgaagatcctacattgcattactaagtacatttagccacatattgttgctctggttaactgtaagtctgaccacattttgtttcaaaaataatgaattcattgatctttttcttaaaaaaaaaatccattacttctaaaaccccagtttcatgtaaatatgagagatctatttattagttcccataatagaagaactagaggacaccaaatgaaattaatgggtagcaggtttaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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