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2024-03-29 19:14:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)

LOCUS       XM_023790570            1118 bp    mRNA    linear   VRT 03-FEB-2018
DEFINITION  PREDICTED: Paramormyrops kingsleyae vimentin (vim), mRNA.
ACCESSION   XM_023790570
VERSION     XM_023790570.1
DBLINK      BioProject: PRJNA432421
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Paramormyrops kingsleyae
  ORGANISM  Paramormyrops kingsleyae
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala;
            Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_019715176.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Paramormyrops kingsleyae Annotation
                                           Release 100
            Annotation Version          :: 100
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.0
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Paramormyrops kingsleyae"
                     /mol_type="mRNA"
                     /isolate="PKING1"
                     /db_xref="taxon:1676925"
                     /chromosome="Unknown"
                     /sex="male"
                     /tissue_type="Fin Clip"
                     /dev_stage="adult"
                     /ecotype="Bambomo Creek, P0-Absent"
                     /country="Gabon: Bambomo Creek"
                     /lat_lon="2.16341666 S 11.46185 E"
                     /collection_date="Jul-2009"
                     /collected_by="Jason Gallant"
     gene            1..1118
                     /gene="vim"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 57 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:111832849"
     CDS             132..1118
                     /gene="vim"
                     /codon_start=1
                     /product="vimentin"
                     /protein_id="XP_023646338.1"
                     /db_xref="GeneID:111832849"
                     /translation="
MTTKTLTKQYPSSYKRIFGEERPTMARSTYSSRQFSSPVRSRVTYSVSSAPSTYATKSYRVRSSAPGPKLSSDTVDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKVLITELEQHKGRGTSRIGDLYEEEMRELRRQVDQLNNEKARVEVDRDNLASDIDRLREKLQDEALQREEAEINLQSFRQDVDNASLARLDLERKVESLEDEIAFLKKLHEEELTELQTQMQEQHVQVEMEVAKPDLTAALRDVRLQYENLATRNLQESEEWYKSKFADLSETAARNQEALRQAKQDANDYRRQVQVLTCEVDALKGTP"
     misc_feature    156..407
                     /gene="vim"
                     /note="Intermediate filament head (DNA binding) region;
                     Region: Filament_head; pfam04732"
                     /db_xref="CDD:428095"
     misc_feature    408..>1112
                     /gene="vim"
                     /note="Intermediate filament protein; Region: Filament;
                     pfam00038"
                     /db_xref="CDD:425436"
ORIGIN      
tgcatacggagcggtctatataacccagttgagccgatcttattattcttgttgcggatgagtctggtggtgcgcttggaaggaaagaaaataattagtaaataagttcgtttagaccaaaggagtacaaaatgaccacgaaaacattgaccaagcagtacccatcatcctataaaaggatcttcggtgaggaaagacccacgatggctcgatccacctactcaagccgccagttctccagcccagtgcgatcacgggttacctacagtgtctcttcagcaccgtccacctacgccaccaaaagttaccgggtccgcagcagcgccccggggcccaagctgtcatcggacacggtggacttcgccctgtccgatgccatcaacaccgagttcaaggccaaccgcaccaacgagaaggcagagatgcagcatctcaacgaccgcttcgccagctacattgagaaggtgcgcttcctggagcagcagaacaaggtcctgatcaccgagctggaacagcataagggccgcggcacgtcgcgcatcggggacctgtacgaggaggagatgcgggagctgcggcgccaggtggaccagctgaacaacgagaaagccagggtggaggtggatcgggacaacctggcgagcgacatcgatcggctccgggagaagctccaggatgaagctcttcagcgtgaagaagctgaaataaacctgcagagcttcagacaggatgtggacaacgcctctctggcccgcctggacctggagcggaaggtggagtctctggaggatgagatcgccttcctgaagaagcttcatgaggaggagctgactgagctgcagacccagatgcaagagcagcacgtgcaggtggagatggaggtggccaagccagacctgacggccgccctgcgcgacgtccgactgcagtatgagaacctggccacccgaaacctccaggagtctgaggagtggtacaagtcgaagtttgccgacctttccgagacggcggcccgtaaccaggaagccctccggcaggccaaacaggatgccaacgactaccgacggcaggtgcaggtcctcacctgtgaggtggacgccctcaagggcacgccttaa
//

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]