2024-03-29 19:14:47, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023790570 1118 bp mRNA linear VRT 03-FEB-2018 DEFINITION PREDICTED: Paramormyrops kingsleyae vimentin (vim), mRNA. ACCESSION XM_023790570 VERSION XM_023790570.1 DBLINK BioProject: PRJNA432421 KEYWORDS RefSeq; includes ab initio. SOURCE Paramormyrops kingsleyae ORGANISM Paramormyrops kingsleyae Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Osteoglossocephala; Osteoglossomorpha; Osteoglossiformes; Mormyridae; Paramormyrops. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019715176.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Paramormyrops kingsleyae Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 1% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..1118 /organism="Paramormyrops kingsleyae" /mol_type="mRNA" /isolate="PKING1" /db_xref="taxon:1676925" /chromosome="Unknown" /sex="male" /tissue_type="Fin Clip" /dev_stage="adult" /ecotype="Bambomo Creek, P0-Absent" /country="Gabon: Bambomo Creek" /lat_lon="2.16341666 S 11.46185 E" /collection_date="Jul-2009" /collected_by="Jason Gallant" gene 1..1118 /gene="vim" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111832849" CDS 132..1118 /gene="vim" /codon_start=1 /product="vimentin" /protein_id="XP_023646338.1" /db_xref="GeneID:111832849" /translation="
MTTKTLTKQYPSSYKRIFGEERPTMARSTYSSRQFSSPVRSRVTYSVSSAPSTYATKSYRVRSSAPGPKLSSDTVDFALSDAINTEFKANRTNEKAEMQHLNDRFASYIEKVRFLEQQNKVLITELEQHKGRGTSRIGDLYEEEMRELRRQVDQLNNEKARVEVDRDNLASDIDRLREKLQDEALQREEAEINLQSFRQDVDNASLARLDLERKVESLEDEIAFLKKLHEEELTELQTQMQEQHVQVEMEVAKPDLTAALRDVRLQYENLATRNLQESEEWYKSKFADLSETAARNQEALRQAKQDANDYRRQVQVLTCEVDALKGTP"
misc_feature 156..407 /gene="vim" /note="Intermediate filament head (DNA binding) region; Region: Filament_head; pfam04732" /db_xref="CDD:428095" misc_feature 408..>1112 /gene="vim" /note="Intermediate filament protein; Region: Filament; pfam00038" /db_xref="CDD:425436" ORIGIN
tgcatacggagcggtctatataacccagttgagccgatcttattattcttgttgcggatgagtctggtggtgcgcttggaaggaaagaaaataattagtaaataagttcgtttagaccaaaggagtacaaaatgaccacgaaaacattgaccaagcagtacccatcatcctataaaaggatcttcggtgaggaaagacccacgatggctcgatccacctactcaagccgccagttctccagcccagtgcgatcacgggttacctacagtgtctcttcagcaccgtccacctacgccaccaaaagttaccgggtccgcagcagcgccccggggcccaagctgtcatcggacacggtggacttcgccctgtccgatgccatcaacaccgagttcaaggccaaccgcaccaacgagaaggcagagatgcagcatctcaacgaccgcttcgccagctacattgagaaggtgcgcttcctggagcagcagaacaaggtcctgatcaccgagctggaacagcataagggccgcggcacgtcgcgcatcggggacctgtacgaggaggagatgcgggagctgcggcgccaggtggaccagctgaacaacgagaaagccagggtggaggtggatcgggacaacctggcgagcgacatcgatcggctccgggagaagctccaggatgaagctcttcagcgtgaagaagctgaaataaacctgcagagcttcagacaggatgtggacaacgcctctctggcccgcctggacctggagcggaaggtggagtctctggaggatgagatcgccttcctgaagaagcttcatgaggaggagctgactgagctgcagacccagatgcaagagcagcacgtgcaggtggagatggaggtggccaagccagacctgacggccgccctgcgcgacgtccgactgcagtatgagaacctggccacccgaaacctccaggagtctgaggagtggtacaagtcgaagtttgccgacctttccgagacggcggcccgtaaccaggaagccctccggcaggccaaacaggatgccaacgactaccgacggcaggtgcaggtcctcacctgtgaggtggacgccctcaagggcacgccttaa
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@meso_cacase at
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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