2024-04-26 07:34:42, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023765118 4357 bp mRNA linear MAM 26-JAN-2018 DEFINITION PREDICTED: Myotis lucifugus NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X2, mRNA. ACCESSION XM_023765118 VERSION XM_023765118.1 DBLINK BioProject: PRJNA208947 KEYWORDS RefSeq. SOURCE Myotis lucifugus (little brown bat) ORGANISM Myotis lucifugus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Vespertilionidae; Myotis. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_005871425.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Myotis lucifugus Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4357 /organism="Myotis lucifugus" /mol_type="mRNA" /db_xref="taxon:59463" /chromosome="Unknown" /sex="female" /country="USA: Framingham, MA" gene 1..4357 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:102434332" CDS 743..4096 /gene="NRDE2" /codon_start=1 /product="protein NRDE2 homolog isoform X2" /protein_id="XP_023620886.1" /db_xref="GeneID:102434332" /translation="
MALTSIFWSPLKSELSDESDSNRNLRQASRKKKKEKKKKRKHQHHKKTKRKRGQSGSSGSEPDTDSEKDKSPRGLRGGNRGPETLSQEKNAAAAPAAGLRCVWLEDIQALTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGASTGKKRAHKHVERYFTKKNVGLMNADGVAVSSKTDPPSSAPLSFIPVKDSDDVAPPVTTWLNPLGIYDQSTTQWLQGQGPSEQESKQPDSQPDHEDALLKARVEEFNRRVRENPRDTQLWMAFVAFQDEVMRSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIDSNPSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPELPGTEEAMFALFLQQCHFLRQAGHAEKAVSLFQAMVDFTFFKPDSVKDLPTRGQVEFFEPFWDSGEPRAGEKGARGWRAWMHQQERGGWVVINPDDDDDEPEEDDQDIRDKTLPRWQIWLAAERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIGQSLIRLSSQALQFQLIVAFLQFLGVPAGFSPPASCLYLAMDENSIFDNGLYDEQPLTVLNLSFSGISCVGRTDQLGCRRWTRGHSREGEEFIRNIFHLVMPLFSGRERSQLCSSWLRYEIAKVIWCLHTKNKKRLKSRGKNCKKLAKNLLKEPENCNNFCLWKQYAHLEWLLGNTEDARKVFDTALSTAGSGELKDPEVCELSLLYAELELELAPDTRVATAARAVHILTRLAESSPYGPYTGQVLAIHILKARKAYEHALQDCLCEGRVSDPAATASLNRLVSVVKCFMLFQYLTIGIDAAVQIYEQVFAKLKGSLSPEGPGLEASACPPSVSSVLEAVTLMHTSLLRFHMKVSVYPLAPLRQALSEALKLYPGNQVLWRSYVQLQSKSHSASKTRRFFGAITRSSEPLEPWLFAIEAEKMRKRLVETVQRVDGREVYATIPETGLTHRIRALFENAIRSEHGSQCPLLWRMYLSFLVSLGNKDRSKGVFYKALQSCPWAKALYMDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 1082..1372 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(1082..1108,1115..1120,1130..1135,1139..1141, 1145..1189,1196..1204,1208..1216,1238..1246,1256..1261, 1265..1270,1277..1297,1322..1333,1343..1372) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1538..2536 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
cacctgtgtcccagagttccccgcggcgctgcaaagcctcctgggaagggcccctgtccgggtcccggcttcttcggggcgcgagtcctggagttacggaaggagagagacctcggagggaccctggagctgggacttccataaagtcattcttcctctgagcctcagttacttcgcctataaagtggtgataatggtgctccacgcgtcaaggaaactcccggcgcaaatgctgggtgttctggtgccctcctcctgttgtacttcttcctgagatgctgattgggctcatggctttaggcaggccgagagctggggcatgaggaccccaagcccagtcaaactgtttctctcccgacaggcacagctgctgggaatagacgtaacatttattttttgagagcctgctgtgtgccaggtgatggcctaacatgtagtatgtcgtagtatgtcagccttaaccgtcccctggaggtctgcagtgttaacaattgaggcactgacaggcatgcctccgagatgttgagagtttggtcccagactaccccgcagttaagcgagttgtattcttgttggtggagggtcttccattcctaaaaaatgcgacacctgtgaagcacagtacagggaagctcgggaataggaggtatgcctacagggaattgtaacgtacaggaagtctaagtcatgcgcttaatgtggcggagtccagttgtatctgacacctcttacatcctctcagatggctctgacatctatattctggagtcctctgaaatcagagctatcagatgaaagtgactcgaacagaaacctcagacaagccagcaggaaaaagaagaaggagaaaaagaagaagaggaagcatcagcaccacaagaaaaccaagagaaaacgcgggcagtccggtagcagtgggtctgaaccagacactgactctgaaaaggacaaatcccccagaggcctcagaggcgggaacagaggaccggagacactgagccaagaaaagaatgctgctgctgctcctgctgctgggctccgctgtgtttggcttgaggacatccaggctctgacaggagaaaccttcagaacagataagaaaccagaccctgcaaactgggaatataagtctctctaccgaggagatatagccagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcctgggagggggcttccacgggaaagaagcgtgcgcacaagcatgtcgagcgctatttcacgaagaagaacgtggggctgatgaacgctgatggagttgccgtgagcagtaaaactgaccctccctcgtctgcgcccctctccttcatcccagtgaaggactcggacgatgtggctcctcctgttacaacctggttgaaccctctggggatttatgatcaatccaccacccagtggttacagggacaaggtccttcagagcaggaatctaagcagccagactcacagccagaccatgaggacgcgcttctcaaggccagggtggaggagttcaaccggagggtgcgggagaatcctcgggatactcagctgtggatggcgttcgttgcttttcaggacgaggtcatgcggagccctggcctgtatgccatcgaggaaggcgagcaggagaagcggaagcggtccctgaagctcatcctggagaagaagctggccattctggagcgggccatcgacagcaacccgagcagcgtggacctgaaactcgccaagctgaagctctgcacggagttctgggagccctccacgctggtcaaagagtggcagaagctgatattcctgcaccccaacaatacagccctttggcagaaataccttttgttttgccagagccagttcagcaccttttcaatatcaaaaattcacagcctttatgggaaatgcttgagtacattgtctgctgtgaaggatggtagcatcttgtctcaccctgagctgcctggcaccgaggaggccatgtttgcgctcttccttcagcagtgccacttcctgcgccaggccgggcacgcggagaaggccgtctccttgttccaggccatggtcgacttcaccttcttcaaacccgacagcgtgaaagacctgcccaccagagggcaggtggagttctttgagcccttttgggacagcggagagccccgggctggggagaagggcgcccgaggctggagagcgtggatgcaccagcaggagcggggcggctgggtggtcatcaacccagatgatgatgatgatgaaccagaagaggatgaccaggacatcagagataagaccctgcccaggtggcagatctggcttgctgctgagcggtcccgagaccagaggcactggcggccgtggcgccctgataagaccaagaagcaaaccgaggaagactgtgaggatccagagagacaggtgctgtttgatgatattggacaatctctaatccgactttccagccaagctcttcagttccagctgattgtggcctttctgcagttcttgggtgtgcctgctggcttcagccctccagcctcctgcctctacctggccatggatgagaacagcatctttgataacggactttatgacgaacagccattgactgttctcaacctttcattttctggcatcagctgtgttggtcgcacggaccagttgggctgccggcgctggaccaggggtcacagccgagagggcgaggagttcatccgcaacatcttccacctggtgatgcctttgttttccggcagggagaggtcccagctctgctcctcctggctacggtacgagatcgcaaaggtcatttggtgtctgcacactaaaaacaagaagaggttaaaatcacgaggaaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaactgcaacaatttttgcctctggaagcagtatgcacatctggaatggttgcttggcaacacagaggacgccagaaaagttttcgatacagcgctcagcacggcagggagcggggagctgaaggaccctgaggtctgtgagctcagtctgctctatgctgagctggagctggagctggcgccagacaccagagtggccaccgcggcccgagctgttcacatattaaccaggctggctgagagcagtccctatgggccctacactgggcaagtcctggccattcacattttgaaagctcggaaggcttacgaacacgcactgcaggactgtttgtgtgagggccgcgtctccgatcccgctgccactgcctcccttaaccgcctagttagtgtggttaaatgctttatgctcttccagtatttgaccatagggatcgatgccgctgtgcagatatacgagcaggtatttgcaaaactgaagggctctctttccccagagggcccaggcctggaggccagtgcctgccccccaagtgtgagcagtgtcctcgaggctgtcacactgatgcacacgagcctgctcaggttccacatgaaagtcagcgtgtaccctctggctcctctgcggcaggcgctctcagaggctttaaagttgtatccgggcaaccaggttctttggaggtcctacgttcagcttcagagcaagtcccacagcgccagcaagaccaggagattcttcggtgccatcaccaggtcttcggaacccttggagccttggctgtttgccattgaagctgagaaaatgaggaaaagactggtggagaccgtgcagagggtagatggcagggaggtctacgccacaattcctgagaccggcttgacgcaccggatcagagccctgtttgaaaacgcgatccggagtgagcacggcagccagtgccccttactgtggaggatgtacttgagttttttggtttcgttaggaaataaggacagaagcaagggcgtgttctacaaagcgcttcagagttgtccttgggcaaaggcgctgtacatggacgccgtggagtacttccccgatgagatgcaggagatcctggacctgatgaccgagaaggagctccgagtgcgcctgcccctggaggagctggagctgttgctggaggactagagaccggggatgggccacgcctcagggcatgtccctgccctgggagccgggggagcacgaggtgggatcaggtgtgcgagcatgcgtgccagcagacccgtttttaaagttttctagataatttatatctagttcatcagtctcgtctcttgcacatttttttggatgtgccagtgacacagaagccctcgttttacatattatagatgcgcatcttgtgtttacatgtacatagacaagaacagggcagtggtaaccaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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