2024-04-20 00:19:05, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023232173 3752 bp mRNA linear PRI 30-DEC-2019 DEFINITION PREDICTED: Piliocolobus tephrosceles argonaute RISC catalytic component 3 (LOC111555812), transcript variant X3, mRNA. ACCESSION XM_023232173 VERSION XM_023232173.2 DBLINK BioProject: PRJNA419387 KEYWORDS RefSeq. SOURCE Piliocolobus tephrosceles (Ugandan red Colobus) ORGANISM Piliocolobus tephrosceles Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045434.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 25, 2018 this sequence version replaced XM_023232173.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Piliocolobus tephrosceles Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3752 /organism="Piliocolobus tephrosceles" /mol_type="mRNA" /isolate="RC106" /isolation_source="whole blood" /db_xref="taxon:591936" /chromosome="1" /sex="male" /country="Uganda: Kibale National Park" /lat_lon="0.4862 N 30.3897 E" /collection_date="27-Jul-2014" gene 1..3752 /gene="LOC111555812" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 37 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns" /db_xref="GeneID:111555812" CDS 1153..3033 /gene="LOC111555812" /codon_start=1 /product="protein argonaute-3 isoform X3" /protein_id="XP_023087941.1" /db_xref="GeneID:111555812" /translation="
MCEVLDIHNIDEQPRPLTDSHRVKFTKEIKGLKVEVTHCGTMRRKYRVCNVTRRPASHQTFPLQLENGQTVERTVAQYFREKYTLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLVRSANYETDPFVQEFQFKVRDEMAHVTGRVLPAPMLQYGGRNRTVATPSHGVWDMRGKQFHTGVEIKMWAIACFATQRQCREEILKGFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVIKTSPQTLSNLCLKINVKLGGINNILVPHQRPSVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPSRYCATVRVQRPRQEIIQDLASMVRELLIQFYKSTRFKPTRIIFYRDGVSEGQFRQVLYYELLAIREACISLEKDYQPGITYIVVQKRHHTRLFCADRTERVGRSGNIPAGTTVDTDITHPYEFDFYLCSHAGIQGTSRPSHYHVLWDDNCFTADELQLLTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDKEHDSAEGSHVSGQSNGRDPQALAKAVQIHQDTLRTMYFA"
misc_feature 1153..1494 /gene="LOC111555812" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1288..1290,1333..1335,1375..1377,1387..1389, 1441..1443,1462..1464,1468..1470) /gene="LOC111555812" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1627..2904 /gene="LOC111555812" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2038..2040,2050..2052,2086..2097,2104..2106, 2128..2130,2137..2139,2149..2151,2161..2163) /gene="LOC111555812" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2242..2244,2248..2250,2458..2460,2872..2874) /gene="LOC111555812" /note="active site" /db_xref="CDD:240015" ORIGIN
gaggctgaggcaggagaactgcttgaacctgggaggtggaggttgcggtgagccaagatcttgccactgcactccagcctgggggacagggcaagattcttgtttcagaaaaaaaaaaagaaacctatggtagcttaatgaaacggaaataaagcctaacatttgaagttggtttattttttccccagctttattcaggtatgattaacaagtaaaagttacatgtatttgaggtatacaatgtgatttttgataatacgtatgcattgtgaaatgattacagcaatcaagctaattaatgtaacaatcacctcataggtatgtgagagacataagaacatgaaatttactctcagcatatttcaagtatacataataattatagtcaccatgcagtacattaggtctccagaacttactcatcttgcaactgaaagtttataccctttgaccagtatctcaccatttgcctcagccctcagccctgggtaactaccattctagcctctgtttctgtgagttgagctttcttagattccacatgtgagatcatacagtatttgtctttctgtgtcttgcttatttcatttaacataatatcctccaggttcatccatgttgtcacagatgacaagacttccttcttttaaaggctaaataatattccattttatgtatataccacattctttttatccatttgtctgtcagtggtcacttaggttgtttccatatcttggctattgcgaataatgctgcagtgaacgtgggagtgcagatatctccttgagatagtgattttattaactttgcatatagtccctgaagtgggattgctagatcatataatagttctatttttaatgttttgaggaacctccatactgttttccgtaaaggctgcaacaagggtttattaattgccaataaaatgctgctgtgaaaaataatgagaaatattgcactgacgatcttacttggttacatttccttttttgcttttgcgtgattttgattttggaagccttgtacgtggtatactgcactgaactaaacagcctttattgaacttgaaatcagctggagaagactggtattgagcactatatttctgccactgccttctacaaagcacaacctgtaattcagttcatgtgtgaagttcttgatattcataatattgatgagcaaccaagacctctgactgattctcatcgggtaaaattcaccaaagagataaaaggtttgaaggttgaagtgactcactgtggaacaatgagacggaaataccgtgtttgtaatgtaacaaggaggcctgccagtcatcaaacttttcctttacagttagaaaatggccaaactgtggagagaacagtagcacagtatttcagagaaaagtatactcttcagctgaagtacccgcaccttccctgcctgcaagtcgggcaggagcagaaacacacctacctgccgctagaagtctgtaatattgtggcagggcaacgatgtatcaagaagctaacagacaatcagacttccactatgatcaaggcaacagcaagatctgcaccagatagacaagaggaaattagcagattggtaagaagtgcaaattatgaaacggatccatttgttcaggagtttcaatttaaagttcgggatgaaatggctcatgtaactggacgtgtacttccagcacctatgctccagtatggaggacggaatcggacagtagcaacaccaagccatggagtatgggatatgcgagggaaacaattccacacaggagttgaaatcaaaatgtgggctatcgcatgttttgccacacagaggcagtgcagagaagaaatattgaagggtttcacagaccagctgcgtaagatttctaaggatgcagggatgcccatccagggccagccatgcttctgcaaatatgcacagggggcagacagcgtagagcccatgttccggcatctcaagaacacatattctggcctacagcttattatcgtcatcctgccagggaagacaccagtgtatgcggaagtgaaacgtgtaggagacacacttttgggtatggccacacaatgtgttcaagtcaagaatgtaataaaaacatctcctcaaactctctcaaacttgtgcctaaagataaatgttaaactcggaggaatcaataatattcttgtacctcatcaaagaccttctgtgttccagcaaccagtgatctttttgggagccgatgtcactcatccacctgctggtgatggaaagaagccttctattgctgctgttgtaggtagtatggatgcccacccaagcagatactgtgccacagtaagagttcagagaccccgacaggagatcatccaggacttggcctccatggtccgggaacttcttattcaattttataagtcaactcggttcaagcctactcgtatcatcttttatcgggatggtgtttcagaggggcagtttaggcaggtattatattatgaactactggcaattcgagaagcctgcatcagtttggagaaagactatcaacctggaataacctacattgtagttcagaagagacaccacactcgattattttgtgctgataggacagaaagggttggaagaagtggcaatatcccagctggaacaacagttgatacagacattacacacccatatgagtttgatttttacctctgtagccatgctggaatacagggtaccagtcgtccttcacactatcatgttttatgggatgataactgcttcactgcagatgaacttcagctgctaacttaccagctctgccatacttacgtacgctgtacacgatctgtttctatacctgcaccagcgtattacgctcacctggtagcatttagagccagatatcaccttgtggacaaagaacatgacagtgctgaaggaagtcacgtttcaggacagagcaatgggcgagatccacaagctcttgccaaggctgtacagattcaccaagataccttacgcacaatgtactttgcttaaatagtccaagtatattctctgagaggaagtactgaaagatgaattgacatacaacgtatgtttccagtggagtcaattgagtaaggacacctccagccatacagaaaccaacactgtgtgggggccaaggtctgatccttatgttaatacaaggaagattgtttacttcatcaaggaacacagcatcattatgcaatatgaaaccagccaactgctttttgtgcggtctcctgtaggaagtatcgcaattgttttgttttcatttcttgtagtctaacccttttaatgcctttacctcaagttgcttggcagcacaactatctttgcaaaaaaaattattgaaaaagtaaatgatggtttaaaaaatatacaccttcatgaataatcaaagtgatttttcaaaattatatgtgcaaaaaattaatgtgcattcatatattcttgtaaaaggtgtctgtgtatttttaaaatatatacatccatacttcatatgcatatatatctggatctggattgataatagatatatatgtgtctgtgtatatattttagaattcattccatttggggaacttcctttcccttttattctactaccactaccgcttttatttctctttttcccttgccttcatcacctatattttttccctaatcctaccagtgacattcaaatattcatgtacctggtttgtttgaatgtaaaatatggcaaacta
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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