2024-03-30 00:47:09, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_023205439 3990 bp mRNA linear PRI 30-DEC-2019 DEFINITION PREDICTED: Piliocolobus tephrosceles NRDE-2, necessary for RNA interference, domain containing (NRDE2), transcript variant X1, mRNA. ACCESSION XM_023205439 VERSION XM_023205439.1 DBLINK BioProject: PRJNA419387 KEYWORDS RefSeq. SOURCE Piliocolobus tephrosceles (Ugandan red Colobus) ORGANISM Piliocolobus tephrosceles Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Colobinae; Piliocolobus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_045439.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Piliocolobus tephrosceles Annotation Release 102 Annotation Version :: 102 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.3 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3990 /organism="Piliocolobus tephrosceles" /mol_type="mRNA" /isolate="RC106" /isolation_source="whole blood" /db_xref="taxon:591936" /chromosome="6" /sex="male" /country="Uganda: Kibale National Park" /lat_lon="0.4862 N 30.3897 E" /collection_date="27-Jul-2014" gene 1..3990 /gene="NRDE2" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 mRNAs, 149 ESTs, 6 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns" /db_xref="GeneID:111538208" CDS 234..3728 /gene="NRDE2" /codon_start=1 /product="nuclear exosome regulator NRDE2 isoform X1" /protein_id="XP_023061207.1" /db_xref="GeneID:111538208" /translation="
MALFPAFAGISEAPDSGSSRKELDWLSNPSFCVGSLTSLSQQTEAAPAHVSEGSPLTRSLLKSEPSDESDTNQKLKQISRKKKKEKKKKRKHQHHKKTKRKHGQSSSSRSETDTDSEKDKPSRGVVGSKRESEKPNQGNNAAADTGHRFVWLEDIQAVTGETFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQCISWEGTSTEKKHSRKQVERYFTKKSVGLMNIDGAAISSKTEPPSSEPISFIPVKDLEDAAPVTTWLNPLGIYDQSTTQWLQGQGPPEQESKQPDTQPDSESAALKAKVEEFNRRVRENPRDTQLWMAFVAFQDEAMRSPGLYAIEEGEQEKRKRSLKLILEKKLAILERAIESNQSSVDLKLAKLKLCTEFWEPSTLVKEWQKLIFLHPNNTALWQKYLLFCQSQFSTFSISKIHSLYGKCLSTLSAVKDGSILSHPALPGTEEAMFALFLQQCHFLRQAGHSEKAVSLFQAMVDFTFFKPDSVKDLPTKGQVEFFEPFWDSGEPRAGEKGARGWKAWMHQQERGGWVVINPDEDDDEPEEDDQEIKDKTLPKWQIWLAAERSRDQRHWQPWRPDKTKKQTEEACEDPERQVLFDDIGQSLIRLSSHNLQFQLVEAFLQFLGVPSGLTPPASCLYLAMDENSIFDNGLYDEKPLTFFNPSFSGASCVGRMDRLGCPRWTRGQNREGEEFIRNVFHLVMPLFSGKEKSQLCFSWLQYEIAKVIWCLHTKNKKRLKSQGKNCKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSRELKDSDLCELSLLYAELEVELSPEVRGAATARAVHILTKLTESSPCGPYTGQVLAVHILKARKAYEHALQDCLGDSCVSDPAPTDSCSRLISLAKCFMLFQYLTTGIDAAVRIYEQVFAKLNSYVFPEGSGEGDSASSQSWTSVLEAITLMHTSLLRFHMKVSVYPLAPLREALSQALKLYPGNQVLWRSYVQIQNKSHSASKTRRFFDTVTRSAKALEPWLFAIEAEKLRKRLVETVQRLDGREIHATIPEIGLTHRIQALFENAMRSDSGSQCPLLWRMYLNFLVSLGNKERSKGVFYKALQNCPWAKVLYLDAVEYFPDEMQEILDLMTEKELRVRLPLEELELLLED"
misc_feature 717..1007 /gene="NRDE2" /note="MTR4-interacting domain (MID) found in nuclear exosome regulator NRDE2 and similar proteins; Region: NRDE2_MID; cd22200" /db_xref="CDD:412062" misc_feature order(717..743,750..755,765..770,774..776,780..824, 831..839,843..851,873..881,891..896,900..905,912..932, 957..968,978..1007) /gene="NRDE2" /note="MTR4 binding site [polypeptide binding]; other site" /db_xref="CDD:412062" misc_feature 1170..2168 /gene="NRDE2" /note="necessary for RNA interference; Region: NRDE-2; pfam08424" /db_xref="CDD:429988" ORIGIN
ccccttggccccgccctaccctgatttgccctgcctcgccctgccccgccgcgtccccgtcccttggccaccctcccctctgggccccgcccctcccgcttcggggtcaagccccagagagcttcgcgaaaaccacatttcccagagtgtaccgcgacggctggggtcctcacactggcgctcgctcgccgacgccatatctgtagagaggaactgcggtacggcctgtggtcatggcgctgttcccggccttcgcggggattagtgaggctcccgatagcgggagctccaggaaagagttagactggctgagcaacccaagcttttgtgttggatccctaacgtccctgagccaacagactgaagcagccccagcccatgtttctgaagggtcaccgctgacacggagtcttctgaaatcagagccttcagatgaaagtgacactaaccaaaagctcaaacaaataagcagaaaaaagaagaaagagaaaaagaagaaaaggaagcatcagcatcataagaaaacaaagaggaagcatgggcagtcgagtagcagcaggtctgagacagacaccgattctgaaaaggacaaaccttccaggggcgtcgtaggcagtaaaagggaatctgagaaaccgaatcaaggaaataatgctgcagctgatactggacatcgctttgtttggcttgaggacattcaggctgtgacgggagaaaccttcagaacagataagaaaccagatcctgcgaactgggagtacaagtctctctaccgaggggatatagcaagatacaagaggaaaggagactcctgccttggcattaaccctaagaagcagtgcatatcttgggaagggacttccacagagaagaagcattcacgcaagcaggttgaacgctattttactaagaagagtgtgggattaatgaacattgatggagctgccatcagcagtaaaactgaacctccctcatctgagcccatctcctttataccagtgaaggacttggaagatgcagctcctgttacaacctggttgaatcctctggggatttatgatcagtcaaccacacagtggctacaaggacagggtcctccagagcaggaatcaaagcagccagacacacagccagacagcgagagtgcggctctcaaggccaaggtggaggagtttaacaggagggtgcgggagaatcctcgggatacgcagctgtggatggcattcgttgcttttcaggacgaggccatgagaagtcctggcctgtatgccatcgaggaaggagagcaggaaaagcgaaagaggtccctgaagctcattctggagaagaagctggccattctggagcgggccattgagagcaaccagagcagtgtggatctgaaactggccaagctgaagctctgcacagagttctgggagccctccactctggtcaaagagtggcagaaactgatatttttgcatcccaataatacagccctttggcagaaataccttttattttgccagagccagtttagtaccttttcgatatcaaaaattcacagtctttatggaaaatgcttgagcactttgtctgctgttaaggacggcagcatcctatctcaccctgcgttgcctggcacggaagaggccatgtttgcactctttcttcagcagtgccactttctgcggcaggccggccactctgagaaggccgtctctttgttccaggccatggtggacttcaccttcttcaaacctgacagcgtgaaagatctgcctaccaaaggacaggtggaattctttgagcccttttgggacagtggagagccccgggctggggagaaaggagcccgaggctggaaggcatggatgcaccagcaggaacgaggtggctgggtggtcatcaacccagatgaggatgacgatgaaccagaagaggatgaccaggaaataaaagataagactctgcccaagtggcagatctggcttgctgctgagcgttcccgagaccagaggcactggcagccctggcgccctgataagaccaagaagcaaactgaggaagcctgtgaggatcccgagagacaggtgttgtttgatgatattgggcagtctttgatcagactttccagccacaatcttcagttccagctggtggaggccttcctgcagttcttgggtgtgccttctggccttactcctccagcctcctgtctttatctggctatggatgagaacagcatctttgataatggactttatgatgaaaagcccttgacttttttcaacccctcgttttccggggctagctgtgttggccgcatggatcggttgggctgtcctcgctggaccaggggtcagaaccgagagggcgaggagttcatccgcaatgtcttccaccttgtcatgcctttgttttcaggcaaagagaagtcccagctctgcttctcctggttacagtatgagattgcaaaggtaatttggtgtctgcacactaaaaacaagaagagattaaagtcacaagggaagaactgcaaaaaactagccaagaatctccttaaggagccagaaaaccgcaacaacttttgcctctggaagcagtatgcacatctagagtggttgcttggcaacacggaggatgccagaaaagtttttgacacagcactcagcatggcaggaagcagagaactgaaagactctgacctctgtgagctcagtctgctctatgctgagctggaggtggagctgtcgccggaagtgagaggcgccgccacggcccgagctgttcacatattaaccaagctgactgagagcagcccctgtgggccctacactggacaggtgttggctgttcacattctgaaagcgcgaaaggcttacgagcacgcgctgcaggactgtttgggtgacagctgtgtctccgatccagctcccaccgattcctgtagccgcctaattagcttggctaaatgcttcatgctcttccagtatttgaccacagggattgatgctgctgtgcggatatacgaacaggtatttgcaaaactgaacagttacgttttcccagaaggctctggcgagggggacagtgccagctcccagagttggaccagtgttcttgaagccatcacactgatgcacacgagcctgctgagattccacatgaaagtgagtgtttacccgctcgcccctctgcgagaggcactctcacaggctttaaagttgtatccgggcaaccaggttctttggaggtcctatgtacagattcagaataagtcccacagtgccagcaagaccaggagattttttgacacagtcaccaggtctgccaaagccttggagccttggttgtttgcaattgaagctgagaaactgaggaagagactggtggaaactgtccagaggttagacggtagagagatccatgccacaattcctgagatcggcttaacacatcggatccaagccctgtttgaaaacgccatgcgcagcgacagtggcagccagtgccccttgctgtggaggatgtatttgaactttctggtttccttaggaaataaagaaagaagcaaaggtgtattctacaaagcacttcagaattgtccttgggcaaaggtgttatacctggacgccgtggagtacttccccgacgagatgcaggagatcctggacctgatgactgagaaggagctccgggtacgcctgccgctggaggagctggagctgctgctggaggattagagggcagcaaggccaagccgcccaccctgcagagctaggaggtgtgagcggagaatatgtgtgttaggagacctcagcttttgagatattctttcttgatagtaataatgtgggctgccagcctcttcacatcttgcacactttttgggtgtgtaaatgacacaaaagctatttacatattatatatgtgaatatgtgtatatttgtatatagccagagagtcatgccaaggggtcattaaaccgatgatgattgaggtgtg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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