2024-04-20 11:04:22, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022954129 2488 bp mRNA linear INV 25-OCT-2017 DEFINITION PREDICTED: Stylophora pistillata protein argonaute-2-like (LOC111346866), mRNA. ACCESSION XM_022954129 VERSION XM_022954129.1 DBLINK BioProject: PRJNA415215 KEYWORDS RefSeq. SOURCE Stylophora pistillata ORGANISM Stylophora pistillata Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Scleractinia; Astrocoeniina; Pocilloporidae; Stylophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019218982.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Stylophora pistillata Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2488 /organism="Stylophora pistillata" /mol_type="mRNA" /isolate="CSM Monaco" /isolation_source="northern Red Sea" /db_xref="taxon:50429" /chromosome="Unknown" /tissue_type="whole animal" /country="Jordan: Aqaba" /collection_date="01-Jan-1995" /note="holotype #3, clade 4" gene 1..2488 /gene="LOC111346866" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:111346866" CDS 32..2419 /gene="LOC111346866" /codon_start=1 /product="protein argonaute-2-like" /protein_id="XP_022809864.1" /db_xref="GeneID:111346866" /translation="
MQPPKRPDYGTKGRLIALRANFLCLNTSPELSDLYHYDVEITPDKCPKEIKRDIVNEAIKKYKNTVFQGHHPAFDGERNLYSRIELPVRVKLNVQLPGGDGGRDRHLEVRIQFAGSVSLLELNNFLSGKQDVKRPHGTVQALNTVVRQMPSLSNTSVGKLLFPIGGQGRFLGEGCERKFGFTLSVRPSGWKAMLVNIDVSAKGFYKELAVVPDFLYDTLGLKLNNLKDCKYEVDRGKLEKVICGLRIQTTHAASIKRKYRVWGVSAKSAERMQFDVTDEGTGRTYKTTVAEYFKDRHKVTLRYPHLPCLRVGQKKGTYLPLEVCTVIPCERKHLSEQQITNMIRSTARPAPEQQRDIQHWAQEMTRESNEYLRNEFQTSLNSEMVKVEGHVLPAPRINLGPQDLPLVPRDGSWDMRNKSLHDGARIDQWALACFDRGCREEQLRNFSGQMANVSSRQGLRMSEQPVVVAYGRGIRDVESLFSKWVVDFPGLQLIMAVLPERDKQIYPELKRVGDNVIGIPTQGVQSKNVYSCKPHLCANLALKINSKLGGINHVIAAVVASMDANATKYYARVRAQNHRNGKAAQEIINDLAAMVRELLIEFYKANRKLKPSKIIFYRDGVSEGKFDQVLVHEVRAVQQACMDLEKAYRPRITFVVVQKRHHTRLYCENQRDEVGKARNVPPGTTVDSGITHPYEFDFYLCSHNGIQGTSRPKHYHVLYDDNSFTADALQQLTYQLCHLYARSTRSVSMPAPAYFAHLVAFRARHHVTGNGSVDLENTTKAIEVNAKMKGAMYFT"
misc_feature 239..469 /gene="LOC111346866" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:435368" misc_feature 497..649 /gene="LOC111346866" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:430160" misc_feature <731..1012 /gene="LOC111346866" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(806..808,851..853,896..898,908..910,962..964, 980..982,986..988) /gene="LOC111346866" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1151..2329 /gene="LOC111346866" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1547..1549,1559..1561,1595..1606,1613..1615, 1637..1639,1646..1648,1658..1660,1670..1672) /gene="LOC111346866" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
cactactggtcagattctaagaaacagtggaatgcaacctccaaaaagaccagattatggcacaaaaggccgccttatagctttgagggcaaacttcctctgcctaaatacatcaccggagctttcagacctgtatcactatgatgttgaaataactccagacaaatgtcccaaagaaataaagagggacattgttaatgaagccataaagaaatacaaaaatacagtatttcaaggccaccatcctgcttttgatggtgaaaggaacttgtacagtaggatagaactgcctgttcgtgttaaacttaacgttcaactacctggaggggatggaggtagagacagacatttggaggtcagaattcagtttgctggttcagtgagtcttttggaacttaacaactttttgagtggaaaacaagatgtcaaaagacctcatggtacagtacaggccctaaacactgtggtgcgtcagatgccgtcattgtctaacacctctgttggaaaattattatttccaattggtggtcaaggaagattcctgggagaggggtgtgagcggaaatttggttttactttaagtgttcggccttctggttggaaggccatgctggtgaacattgatgtctctgcaaagggattttacaaggagcttgctgttgttcctgacttcttgtatgacaccctcgggttaaaactgaataacctcaaagactgcaaatatgaagtggatagaggaaagcttgaaaaagttatatgtggacttcgtattcaaactactcatgctgcctctattaagaggaagtacagagtttggggcgtgtcagcaaaatcggccgaaaggatgcagtttgatgttacagatgagggaacaggtcgcacatacaaaacaactgtcgcagagtatttcaaggacagacacaaggtgacattgaggtatcctcatctgccgtgcttacgagttggacagaaaaagggcacgtatctgccactggaggtctgtaccgttattccttgtgaaaggaaacatttatctgaacaacagattacgaacatgatcagaagtactgctcgccctgcacctgagcaacagcgtgacattcaacactgggcccaagaaatgactcgagaaagtaacgagtatctaagaaatgagttccaaacctcactcaactcagagatggttaaggtagaaggacatgtgcttccagcacccagaatcaaccttggaccccaggatctgccattggttcctcgtgatggctcatgggatatgcgcaacaaatcactgcatgatggagcccgtattgatcagtgggcattggcttgttttgacaggggatgtcgggaagaacagctgagaaatttttctgggcaaatggcgaatgtatccagtcgacagggtttgagaatgtcagagcagccagttgttgtggcatacggcaggggcataagagatgttgagagtttgttttctaagtgggtagtagattttccaggcttacaacttatcatggctgttctgccagagagagacaaacaaatctatccagagttaaaacgtgttggcgacaatgttatcggaattccaacgcagggtgtacagtcaaaaaatgtatacagttgtaaacctcacctttgcgccaatctcgcgttgaagatcaactccaaacttggaggaatcaaccatgtaattgctgctgttgtggcaagtatggatgccaatgccacaaagtactatgcacgagtgcgagcacagaaccacagaaatggaaaagcagctcaagaaataattaatgacttggcggctatggtgagagagcttcttattgagttttacaaagccaatcggaagcttaagcctagcaagatcatcttctaccgagatggagtcagcgagggtaaatttgaccaagtacttgttcatgaagtgcgagccgtgcaacaggcctgtatggatcttgaaaaagcttatcgcccaagaatcacctttgtggtggttcagaagcgccatcatacgagattgtactgtgaaaaccaacgagatgaagttggaaaagcaagaaatgttcctcctggtacaactgtggacagcggtatcacgcatccttacgagttcgacttttatctgtgcagccataatggaatccagggaacaagccgacccaagcactaccatgtgttatatgacgataactcattcacagcggacgcccttcagcagctcacgtaccagctgtgtcacttgtacgcaaggagcacgcgtagcgtctccatgccagcccccgcctattttgcccacttggtggcctttagagctagacaccacgtgaccggaaatggaagtgttgacctggagaacactacaaaagccatcgaagtcaacgctaagatgaaaggagccatgtactttacttaaaatattaataaaatattaataaaatatcacgtatcgtgatattttattaatattttattaatgtattat
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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