2024-04-18 20:50:20, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022575226 2808 bp mRNA linear MAM 16-SEP-2019 DEFINITION PREDICTED: Delphinapterus leucas argonaute RISC component 1 (AGO1), transcript variant X3, mRNA. ACCESSION XM_022575226 VERSION XM_022575226.2 DBLINK BioProject: PRJNA407951 KEYWORDS RefSeq. SOURCE Delphinapterus leucas (beluga whale) ORGANISM Delphinapterus leucas Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Monodontidae; Delphinapterus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_022098066.1) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Sep 16, 2019 this sequence version replaced XM_022575226.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Delphinapterus leucas Annotation Release 101 Annotation Version :: 101 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 8.2 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2808 /organism="Delphinapterus leucas" /mol_type="mRNA" /isolate="GAN/ISIS: 26980492/103006" /db_xref="taxon:9749" /chromosome="Unknown" /sex="female" /tissue_type="blood" /dev_stage="adult" gene 1..2808 /gene="AGO1" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:111175575" CDS 195..2705 /gene="AGO1" /codon_start=1 /product="protein argonaute-1 isoform X3" /protein_id="XP_022430934.1" /db_xref="GeneID:111175575" /translation="
MEAGPSGAAAGTYLPPLQQVFQAPRRPGIGTVGKPIKLLANYFEVDIPKIDVYHYEVDIKPDKCPRRVNREVVEYMVQHFKPQIFGDRKPVYDGKKNIYTVTALPIGNERVDFEVTIPGEGKDRIFKVSIKWLAIVSWRMLHEALVSGQIPVPLESVQALDVAMRHLASMRYTPVGRSFFSPPEGYYHPLGGGREVWFGFHQSVRPAMWKMMLNIDVSATAFYKAQPVIEFMCEVLDIRNIDEQPKPLTDSQRVRFTKEIKGLKVEVTHCGQMKRKYRVCNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIKATARSAPDRQEEISRLMKNASYNLDPYIQEFGIKVKDDMTEVTGRVLPAPILQYGGRNRAIATPNQGVWDMRGKQFYNGIEIKVWAIACFAPQKQCREEVLKNFTDQLRKISKDAGMPIQGQPCFCKYAQGADSVEPMFRHLKNTYSGLQLIIVILPGKTPVYAEVKRVGDTLLGMATQCVQVKNVVKTSPQTLSNLCLKINVKLGGINNILVPHQRSAVFQQPVIFLGADVTHPPAGDGKKPSITAVVGSMDAHPSRYCATVRVQRPRQEIIEDLSYMVRELLIQFYKSTRFKPTRIIFYRDGVPEGQLPQILHYELLAIRDACIKLEKDYQPGITYIVVQKRHHTRLFCADKNERVSEGLRKPPIPLSCLLSLNMEEALEIKSGVLVLGLSIFPGPFLPLSSCGPSSAASFPLFPPSPLLPLYFISLLLAPWPIDPIYRPAPREGKGNFHLLNFSYVPDTVQGVFLTAAL"
misc_feature 270..2369 /gene="AGO1" /note="protein argonaute; Provisional; Region: PLN03202" /db_xref="CDD:215631" misc_feature 1362..>2369 /gene="AGO1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1773..1775,1785..1787,1821..1832,1839..1841, 1863..1865,1872..1874,1884..1886,1896..1898) /gene="AGO1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" ORIGIN
gctgggggagctgctgcaggctccgcggcggcggctgcaacggaggctgcgggggcggcggcgcgagcggccgggcttgggggggtagccgagcccggcccgggagcccaagcagctaaagtgcggggtacctaggcccttcacgctggactccacagtctccgggccgcctgacctccgcacgggtatatgggatggaagcgggaccctcgggagcagctgcaggcacctacctgccccccctgcagcaggtgttccaggcacctcgtcggcctggcattggcaccgtggggaaaccaatcaagcttctggccaactactttgaagtggacatccctaagattgacgtctaccactacgaggtggatatcaagccggataagtgtcctcgcagagtcaaccgggaagtggtggaatacatggtccagcatttcaagcctcagatctttggtgatcgcaagcccgtgtatgatggaaagaagaacatttacactgtcacagcactgcccattggcaatgaacgggttgacttcgaggtgacaatccctggggaagggaaggatcgaatcttcaaggtctccatcaagtggctagccattgtgagctggcgcatgctgcatgaggccttggttagtggccagatccccgttcccctggagtctgtgcaagccctggatgtggccatgaggcacctggcatccatgaggtacacccctgtgggccgctccttcttctcaccgcctgagggctactaccacccgctggggggtgggcgcgaggtctggttcggctttcaccagtctgtgcgccctgccatgtggaagatgatgctcaacattgatgtctcagccactgccttctacaaggcgcagccagtgattgagttcatgtgtgaggtgctggacatcaggaacatagatgagcagcccaagcccctcacggactctcagcgtgtgcgcttcaccaaggagatcaagggcctgaaggtggaagtgacccactgtggacagatgaagaggaaataccgcgtgtgtaatgttacccgccgccctgccagccatcagacgtttcccttgcagctggagagtggacagactgtggagtgcacagtggcacagtatttcaagcagaaatataaccttcagctcaagtatccccacctgccctgcctgcaagttggccaggaacaaaagcatacctacctgcccctagaggtctgtaacattgtggctgggcagcgctgcattaagaagctgactgacaaccagacttcaaccatgataaaggctacagctagatcggccccagacagacaagaggagatcagccgcctgatgaagaatgccagctacaacctagatccctacatccaggaatttgggatcaaggtgaaggatgacatgacggaggtgacggggcgagtgctgccggcgcccatcttgcagtacggcggccggaaccgggccattgccacacccaatcaaggtgtctgggacatgcgggggaaacagttctacaatggaattgagatcaaagtctgggccattgcctgcttcgcaccccaaaaacagtgtcgagaagaagtgctcaagaacttcacagaccagctgcggaagatttccaaggatgcagggatgcccatccagggccagccttgcttctgcaaatatgcgcagggggcagacagcgtggagcccatgttccggcatctcaagaacacctactcagggctgcagctcattatcgtcatcctgccagggaagacgccagtgtatgctgaagtgaaacgtgttggagatacactcttgggaatggctacacagtgtgtgcaagtgaagaatgtggtcaagacctcgcctcagactctgtccaacctttgcctgaagatcaatgtcaaacttggtggcattaacaacatcctagttccacaccaacgctctgctgtctttcaacaaccagtgatattcctgggagcagatgttacacaccccccagcaggggatgggaaaaaaccttctatcacagcagtggtaggcagtatggatgcccaccccagccgttactgtgctactgtgcgggtgcagcgacctcggcaggagatcattgaagacttatcctacatggtacgggagctgctcatccagttctacaagtccacccgcttcaagcctacccgcatcatcttctaccgagatggggttcctgaaggccagctcccccagatcctccactatgagctgctggccattcgtgatgcctgcatcaaactggaaaaggactaccagcccgggatcacttatattgtggtgcagaaacgccatcacacccgccttttttgtgctgacaagaatgagcgagtgagtgagggattgaggaagccacccatacccttatcttgtctcctttctcttaatatggaagaagcccttgaaataaaatctggggttttagtccttggcctgtccatcttccctggtccctttcttccccttagctcttgtggtccttcctctgctgcttccttccctttgtttcccccttctcccctccttcccttatacttcatctccctcctcctagctccctggcctatagaccccatatatagaccagctcccagagaagggaaagggaacttccatttattgaacttctcctatgtgccagacactgtacaaggcgtcttcctcacagcagccctgtgagattgggaagagtggtaacatcccagctgggaccactgtggacaccaacatcacccacccatttgagtttgacttctatctgtgcagccacgcaggcatccag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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