2024-04-23 21:05:54, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS XM_022500397 939 bp mRNA linear MAM 20-SEP-2017 DEFINITION PREDICTED: Enhydra lutris kenyoni olfactory receptor 6B2-like (LOC111145503), mRNA. ACCESSION XM_022500397 VERSION XM_022500397.1 DBLINK BioProject: PRJNA407952 KEYWORDS RefSeq. SOURCE Enhydra lutris kenyoni (northern sea otter) ORGANISM Enhydra lutris kenyoni Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Musteloidea; Mustelidae; Lutrinae; Enhydra. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_019154085.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Version :: Enhydra lutris kenyoni Annotation Release 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 7.4 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..939 /organism="Enhydra lutris kenyoni" /mol_type="mRNA" /isolate="GAN:26980312" /sub_species="kenyoni" /db_xref="taxon:391180" /chromosome="Unknown" /sex="male" /tissue_type="blood" /dev_stage="adult" gene 1..939 /gene="LOC111145503" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins" /db_xref="GeneID:111145503" CDS 1..939 /gene="LOC111145503" /codon_start=1 /product="olfactory receptor 6B2-like" /protein_id="XP_022356105.1" /db_xref="GeneID:111145503" /translation="
MRGENVTKVSVFILLGFPTAPWLQYVLFLLFLLTYLFVLVENLAIILTIQTSSSLHRPMYYFLGSMSFLEIWYVSDIIPKMLGGFLLQQKHISFIGCMTQLYFFSSLVCTECVLLASMAYDRYVAICHPLRYQVIMTWELCVQLVVFSFVSGFSISAIKVYFISSATFCGSNVLNHFFCDISPILKLACTDFSTAELVDFILAFIILVFPLMATVLSYGHISMAVLRIPSATGCWKAFSTCASHLTVVTIFYTALLFMYVRPQAIDSRSSNKLISVLYTVLTPIINPLIYCLRNKEFKATLKKALGFGQIPV"
misc_feature 118..882 /gene="LOC111145503" /note="olfactory receptor subfamily 6B and related proteins, member of the class A family of seven-transmembrane G protein-coupled receptors; Region: 7tmA_OR6B-like; cd15224" /db_xref="CDD:320352" misc_feature 175..255 /gene="LOC111145503" /note="TM helix 2 [structural motif]; Region: TM helix 2" /db_xref="CDD:320352" misc_feature order(241..243,250..255,289..306,310..315,322..324, 457..459,463..477,583..585,592..600,604..612,616..621, 754..756,763..768,772..777,784..786,802..807,811..819, 826..828,835..840) /gene="LOC111145503" /note="putative ligand binding pocket [chemical binding]; other site" /db_xref="CDD:320352" misc_feature 289..381 /gene="LOC111145503" /note="TM helix 3 [structural motif]; Region: TM helix 3" /db_xref="CDD:320352" misc_feature 421..477 /gene="LOC111145503" /note="TM helix 4 [structural motif]; Region: TM helix 4" /db_xref="CDD:320352" misc_feature 583..675 /gene="LOC111145503" /note="TM helix 5 [structural motif]; Region: TM helix 5" /db_xref="CDD:320352" misc_feature 694..786 /gene="LOC111145503" /note="TM helix 6 [structural motif]; Region: TM helix 6" /db_xref="CDD:320352" misc_feature 805..882 /gene="LOC111145503" /note="TM helix 7 [structural motif]; Region: TM helix 7" /db_xref="CDD:320352" ORIGIN
atgaggggagagaatgtcaccaaggtcagtgtgttcatcctactgggcttccccacggccccttggctgcagtacgtgctcttcctcctcttcctgctcacctaccttttcgtgctggtggagaacttggccatcatcctcaccatccagaccagctcctccctccacaggcccatgtactactttctgggctccatgtctttcctggagatctggtacgtctctgacatcatccccaagatgctgggtggtttcctcctgcagcagaaacacatctcctttattggctgcatgacccagctgtacttcttcagctccttggtgtgcactgagtgtgtgctcctggcctccatggcctacgatcgctacgtggccatctgccatcccctgcgctaccaggtcatcatgacctgggagctctgtgtgcagctggtggtcttctcctttgtgagcggcttctccatctccgccatcaaggtgtacttcatctccagtgccacattctgtggctccaacgtcctgaaccactttttctgtgacatttcccccatcctcaaactggcctgcacagacttctcgacggcagagctggtggacttcatcttggccttcatcatcctggtgtttcccctcatggccaccgtgctctcctatgggcacatctccatggctgtcctgcgcatcccttctgccactggctgctggaaggccttctccacttgtgcctcccacctcactgtggtcactatcttctatacggccttgcttttcatgtatgtccggccccaggccatcgattcccggagctccaacaagctcatttctgttctgtacactgtcctcaccccaatcatcaacccactgatctactgtcttcggaacaaagaatttaaggccaccttgaaaaaggctctgggctttggtcaaattccagtgtag
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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